Pavir.Aa01423 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Aa01423 T050645_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.875 0.843
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.840 0.784
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.840 0.784
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa01423.1.p bHLH 231 281

Links

Other bHLH family TFs
Other Panicum virgatum TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr6G21220_001 Musa acuminata GSMUA_Achr6G21220_001 I 0.914
BGIOSGA008576 Oryza indica BGIOSGA008576 I 0.903
GRMZM2G437481 Zea mays GRMZM2G437481 I 0.903
LPERR02G18900 Leersia perrieri LPERR02G18900 I 0.903
OB02G30670 Oryza brachyantha OB02G30670 I 0.903
OBART02G23210 Oryza barthii OBART02G23210 I 0.903
OLONG_009256 Oryza longistaminata OLONG_009256 I 0.903
OMERI02G22740 Oryza meridionalis OMERI02G22740 I 0.903
ONIVA02G26110 Oryza nivara ONIVA02G26110 I 0.903
OPUNC02G21170 Oryza punctata OPUNC02G21170 I 0.903
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I 0.903
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I 0.903
Sb04g025260 Sorghum bicolor Sb04g025260 I 0.903
Sb06g020810 Sorghum bicolor Sb06g020810 I 0.903
Si010513m.g Setaria italica Si010513m.g I 0.903
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I 0.903
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I 0.903
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I 0.903
Pavir.J08536 Panicum virgatum Pavir.J08536 I 0.903
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.890
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.890
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.888
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.886
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.886
AT2G43140 Arabidopsis thaliana AT2G43140 I 0.883
Bo3g036400 Brassica oleracea Bo3g036400 I 0.883
Bo4g019620 Brassica oleracea Bo4g019620 I 0.883
Bra000291 Brassica rapa Bra000291 I 0.883
Bra004748 Brassica rapa Bra004748 I 0.883
fgenesh2_kg.4__2475__AT2G43140.1 Arabidopsis lyrata fgenesh2_kg.4__2475__AT2G43140.1 I 0.883
GLYMA20G39220 Glycine max GLYMA20G39220 I 0.883
PGSC0003DMG400006569 Solanum tuberosum PGSC0003DMG400006569 I 0.883
PRUPE_ppa025178mg Prunus persica PRUPE_ppa025178mg I 0.883
Solyc09g098110.2 Solanum lycopersicum Solyc09g098110.2 I 0.883
TCM_020066 Theobroma cacao TCM_020066 I 0.883
VIT_05s0124g00240 Vitis vinifera VIT_05s0124g00240 I 0.883
Pm007619 Prunus mume Pm007619 I 0.883
mgf005043m Mimulus guttatus mgf005043m I 0.883
Aquca_058_00134 Aquilegia coerulea Aquca_058_00134 I 0.883
Bostr.25993s0461 Boechera stricta Bostr.25993s0461 I 0.883
Cagra.3706s0004 Capsella grandiflora Cagra.3706s0004 I 0.883
Carubv10023683m.g Capsella rubella Carubv10023683m.g I 0.883
Gorai.011G144600 Gossypium raimondii Gorai.011G144600 I 0.883
MDP0000273574 Malus domestica MDP0000273574 I 0.883
SapurV1A.0529s0060 Salix purpurea SapurV1A.0529s0060 I 0.883
Thhalv10016998m.g Eutrema salsugineum Thhalv10016998m.g I 0.883
PK07850.1 Cannabis sativa PK07850.1 I 0.883
chr5.LjT42F22.20.nc Lotus japonicus chr5.LjT42F22.20.nc I 0.883
30149.m000231 Ricinus communis 30149.m000231 I 0.879
cassava35513.valid.m1 Manihot esculenta cassava35513.valid.m1 I 0.879
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.875
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.875
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.875
F775_24151 Aegilops tauschii F775_24151 I 0.875
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.875
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.875
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.875
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.875
OB08G26810 Oryza brachyantha OB08G26810 I 0.875
OBART08G19860 Oryza barthii OBART08G19860 I 0.875
OBART09G14660 Oryza barthii OBART09G14660 I 0.875
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.875
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.875
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.875
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.875
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.875
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.875
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.875
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.875
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.875
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.875
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.875
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.875
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.875
OS08G0506700 Oryza sativa OS08G0506700 D 0.875
OS09G0487900 Oryza sativa OS09G0487900 I 0.875
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.875
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.875
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.875
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.875
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.875
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.875
TCM_024842 Theobroma cacao TCM_024842 I 0.875
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.875
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.875
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.875
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.875
Cla017792 Citrullus lanatus Cla017792 I 0.875
Pm000447 Prunus mume Pm000447 I 0.875
Pm025821 Prunus mume Pm025821 I 0.875
29216.m000261 Ricinus communis 29216.m000261 I 0.875
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.875
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.875
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.875
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.875
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.875
mgf016734m Mimulus guttatus mgf016734m I 0.875
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.875
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.875
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.875
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.875
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.875
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.875
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.875
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.875
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.875
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.875
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.875
MDP0000180376 Malus domestica MDP0000180376 I 0.875
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.875
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.875
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.875
PK18038.1 Cannabis sativa PK18038.1 I 0.875
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.875
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.873
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.873
Si017194m.g Setaria italica Si017194m.g I 0.873
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.873
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.873
30152.m002405 Ricinus communis 30152.m002405 I 0.873
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.873
POPTR_0001s27680 Populus trichocarpa POPTR_0001s27680 I 0.867
SapurV1A.0071s0010 Salix purpurea SapurV1A.0071s0010 I 0.861
SapurV1A.0402s0180 Salix purpurea SapurV1A.0402s0180 I 0.861
chr1.CM0318.250.nd Lotus japonicus chr1.CM0318.250.nd I 0.861
Bo4g194080 Brassica oleracea Bo4g194080 N 0.856
Bra037732 Brassica rapa Bra037732 N 0.856
GLYMA08G16190 Glycine max GLYMA08G16190 I 0.855
Cla015469 Citrullus lanatus Cla015469 I 0.855
Cucsa.050160 Cucumis sativus Cucsa.050160 I 0.855
TCM_005925 Theobroma cacao TCM_005925 I 0.852
Gorai.004G035800 Gossypium raimondii Gorai.004G035800 I 0.852
Ciclev10031622m.g Citrus clementina Ciclev10031622m.g I 0.847
gene26967-v1.0-hybrid Fragaria vesca gene26967-v1.0-hybrid I 0.847
orange1.1g016638m.g Citrus sinensis orange1.1g016638m.g I 0.847
AMTR_s00070p00149100 Amborella trichopoda AMTR_s00070p00149100 I 0.845
BGIOSGA016651 Oryza indica BGIOSGA016651 I 0.845
BRADI3G48070 Brachypodium distachyon BRADI3G48070 I 0.845
GLYMA02G29830 Glycine max GLYMA02G29830 I 0.845
LPERR04G13560 Leersia perrieri LPERR04G13560 I 0.845
MLOC_12058 Hordeum vulgare MLOC_12058 I 0.845
OB04G24170 Oryza brachyantha OB04G24170 I 0.845
OBART04G16900 Oryza barthii OBART04G16900 I 0.845
OGLUM04G16920 Oryza glumaepatula OGLUM04G16920 I 0.845
OMERI04G14260 Oryza meridionalis OMERI04G14260 I 0.845
ONIVA04G15000 Oryza nivara ONIVA04G15000 I 0.845
OPUNC04G14700 Oryza punctata OPUNC04G14700 I 0.845
ORGLA04G0140000 Oryza glaberrima ORGLA04G0140000 I 0.845
ORUFI04G18350 Oryza rufipogon ORUFI04G18350 I 0.845
OS04G0489600 Oryza sativa OS04G0489600 I 0.845
GLYMA15G42680 Glycine max GLYMA15G42680 I 0.843
Ca_26916 Cicer arietinum Ca_26916 I 0.843
SapurV1A.0027s0090 Salix purpurea SapurV1A.0027s0090 I 0.843
gw1.185.89.1 Physcomitrella patens gw1.185.89.1 I 0.841
BHLH122 Arabidopsis thaliana AT1G51140 D 0.840
Bo4g191390 Brassica oleracea Bo4g191390 I 0.840
Bo6g024810 Brassica oleracea Bo6g024810 I 0.840
Bra016886 Brassica rapa Bra016886 I 0.840
Bra018896 Brassica rapa Bra018896 I 0.840
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I 0.840
GLYMA11G13960 Glycine max GLYMA11G13960 I 0.840
GLYMA12G05930 Glycine max GLYMA12G05930 I 0.840
GLYMA13G41670 Glycine max GLYMA13G41670 I 0.840
GLYMA15G03740 Glycine max GLYMA15G03740 I 0.840
GRMZM2G085467 Zea mays GRMZM2G085467 I 0.840
GRMZM2G417597 Zea mays GRMZM2G417597 I 0.840
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I 0.840
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I 0.840
MTR_2g098310 Medicago truncatula MTR_2g098310 I 0.840
Sb02g028300 Sorghum bicolor Sb02g028300 I 0.840
Si029614m.g Setaria italica Si029614m.g I 0.840
TCM_040564 Theobroma cacao TCM_040564 I 0.840
Ca_02662 Cicer arietinum Ca_02662 I 0.840
Ca_14223 Cicer arietinum Ca_14223 I 0.840
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I 0.840
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I 0.840
Carubv10009458m.g Capsella rubella Carubv10009458m.g I 0.840
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I 0.840
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I 0.840
Eucgr.G03396 Eucalyptus grandis Eucgr.G03396 I 0.840
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I 0.840
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I 0.840
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I 0.840
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I 0.840
Pavir.J00377 Panicum virgatum Pavir.J00377 I 0.840
Pavir.J14004 Panicum virgatum Pavir.J14004 I 0.840
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I 0.840
PK20089.1 Cannabis sativa PK20089.1 I 0.840