CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ab01730
(
Panicum virgatum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Pavir.Ab01730
T050659_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK18401.1
M01126_2.00
Cannabis sativa
NNNVCACGTGBN
NVCACGTGBNNN
PBM
Lambert et al.(2019)
pTH11272
0.839
0.765
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ab01730.1.p
bHLH
36
86
SKVQKADREKMRRDKLNEQFQELGNTLDPDRPRNDKATILGDTIQMLKDLY
Links
Other
bHLH
family TFs
Other
Panicum virgatum
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BRADI3G11520
Brachypodium distachyon
BRADI3G11520
I
0.890
GRMZM2G114444
Zea mays
GRMZM2G114444
I
0.890
LPERR02G12290
Leersia perrieri
LPERR02G12290
I
0.890
OB0197G10010
Oryza brachyantha
OB0197G10010
I
0.890
Sb03g028030
Sorghum bicolor
Sb03g028030
I
0.890
Si017804m.g
Setaria italica
Si017804m.g
I
0.890
Pavir.Aa02015
Panicum virgatum
Pavir.Aa02015
I
0.890
gene14608-v1.0-hybrid
Fragaria vesca
gene14608-v1.0-hybrid
I
0.874
BGIOSGA008112
Oryza indica
BGIOSGA008112
I
0.855
OPUNC02G13570
Oryza punctata
OPUNC02G13570
I
0.855
OS02G0433600
Oryza sativa
OS02G0433600
I
0.855
SapurV1A.0117s0370
Salix purpurea
SapurV1A.0117s0370
I
0.852
AMTR_s00041p00193340
Amborella trichopoda
AMTR_s00041p00193340
I
0.842
GLYMA08G15740
Glycine max
GLYMA08G15740
I
0.842
GSMUA_Achr11G16630_001
Musa acuminata
GSMUA_Achr11G16630_001
I
0.842
POPTR_0005s11550
Populus trichocarpa
POPTR_0005s11550
I
0.842
PRUPE_ppa008347mg
Prunus persica
PRUPE_ppa008347mg
I
0.842
TCM_000204
Theobroma cacao
TCM_000204
I
0.842
bHLH121
Vitis vinifera
VIT_03s0038g01790
I
0.842
Pm021043
Prunus mume
Pm021043
I
0.842
29830.m001386
Ricinus communis
29830.m001386
I
0.842
evm.TU.supercontig_6.255
Carica papaya
evm.TU.supercontig_6.255
I
0.842
Lus10028456.g
Linum usitatissimum
Lus10028456.g
I
0.842
Lus10041908.g
Linum usitatissimum
Lus10041908.g
I
0.842
MDP0000275844
Malus domestica
MDP0000275844
I
0.842
GLYMA15G29630
Glycine max
GLYMA15G29630
I
0.841
SapurV1A.1150s0140
Salix purpurea
SapurV1A.1150s0140
I
0.841
BHLH121
Arabidopsis thaliana
AT3G19860
I
0.839
Bo1g112310
Brassica oleracea
Bo1g112310
I
0.839
Bra038236
Brassica rapa
Bra038236
I
0.839
bHLH121
Arabidopsis lyrata
fgenesh2_kg.3__2204__AT3G19860.1
I
0.839
POPTR_0004s17540
Populus trichocarpa
POPTR_0004s17540
I
0.839
PRUPE_ppa008596mg
Prunus persica
PRUPE_ppa008596mg
I
0.839
bHLH11
Vitis vinifera
VIT_04s0023g03430
I
0.839
Cla014511
Citrullus lanatus
Cla014511
I
0.839
Pm026758
Prunus mume
Pm026758
I
0.839
29711.m000322
Ricinus communis
29711.m000322
I
0.839
cassava24935.valid.m1
Manihot esculenta
cassava24935.valid.m1
I
0.839
cassava24936.valid.m1
Manihot esculenta
cassava24936.valid.m1
I
0.839
Cucsa.043580
Cucumis sativus
Cucsa.043580
I
0.839
Bostr.19424s0675
Boechera stricta
Bostr.19424s0675
I
0.839
Cagra.0316s0082
Capsella grandiflora
Cagra.0316s0082
I
0.839
Eucgr.I02346
Eucalyptus grandis
Eucgr.I02346
I
0.839
gene07391-v1.0-hybrid
Fragaria vesca
gene07391-v1.0-hybrid
I
0.839
Gorai.005G252200
Gossypium raimondii
Gorai.005G252200
I
0.839
Thhalv10021271m.g
Eutrema salsugineum
Thhalv10021271m.g
I
0.839
Thhalv10023630m.g
Eutrema salsugineum
Thhalv10023630m.g
I
0.839
PK18401.1
Cannabis sativa
PK18401.1
D
0.839
Bo7g117760
Brassica oleracea
Bo7g117760
N
0.838
Bra017745
Brassica rapa
Bra017745
N
0.838
Thhalv10026039m.g
Eutrema salsugineum
Thhalv10026039m.g
N
0.838