Pavir.Fa00493 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Fa00493 T050769_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42280
M06733_2.00 		Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH130_col_a 		0.867 0.961
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.844 0.902
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.844 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fa00493.1.p bHLH 315 365

Links

Other bHLH family TFs
Other Panicum virgatum TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI4G33670 Brachypodium distachyon BRADI4G33670 I 0.914
GRMZM2G142932 Zea mays GRMZM2G142932 I 0.914
GRMZM2G153454 Zea mays GRMZM2G153454 I 0.914
MLOC_30102 Hordeum vulgare MLOC_30102 I 0.914
Sb07g027810 Sorghum bicolor Sb07g027810 I 0.914
Si013950m.g Setaria italica Si013950m.g I 0.914
Si030166m.g Setaria italica Si030166m.g I 0.914
Traes_5BL_4317E525B Triticum aestivum Traes_5BL_4317E525B I 0.914
Pavir.Ba00676 Panicum virgatum Pavir.Ba00676 I 0.914
Pavir.Bb03157 Panicum virgatum Pavir.Bb03157 I 0.914
Pavir.J25484 Panicum virgatum Pavir.J25484 I 0.914
Bo4g015860 Brassica oleracea Bo4g015860 I 0.902
Bra004678 Brassica rapa Bra004678 I 0.902
MTR_1g052470 Medicago truncatula MTR_1g052470 I 0.902
MTR_4g065870 Medicago truncatula MTR_4g065870 I 0.902
Ca_18899 Cicer arietinum Ca_18899 I 0.902
Cla006394 Citrullus lanatus Cla006394 I 0.902
Cucsa.143260 Cucumis sativus Cucsa.143260 I 0.902
mgf016092m Mimulus guttatus mgf016092m I 0.902
GRMZM5G879527 Zea mays GRMZM5G879527 N 0.884
e_gw1.83.237.1 Physcomitrella patens e_gw1.83.237.1 I 0.881
LPERR08G16800 Leersia perrieri LPERR08G16800 I 0.879
LPERR09G10800 Leersia perrieri LPERR09G10800 I 0.879
AT2G42280 Arabidopsis thaliana AT2G42280 D 0.867
POPTR_0003s22290 Populus trichocarpa POPTR_0003s22290 I 0.867
scaffold_403077.1 Arabidopsis lyrata scaffold_403077.1 I 0.867
VIT_06s0004g01740 Vitis vinifera VIT_06s0004g01740 I 0.867
30169.m006403 Ricinus communis 30169.m006403 I 0.867
Cagra.2636s0012 Capsella grandiflora Cagra.2636s0012 I 0.867
Carubv10023498m.g Capsella rubella Carubv10023498m.g I 0.867
MDP0000307685 Malus domestica MDP0000307685 I 0.867
SapurV1A.0009s0400 Salix purpurea SapurV1A.0009s0400 I 0.867
GRMZM2G085467 Zea mays GRMZM2G085467 I 0.856
GRMZM2G417597 Zea mays GRMZM2G417597 I 0.856
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I 0.856
Sb02g028300 Sorghum bicolor Sb02g028300 I 0.856
Si029614m.g Setaria italica Si029614m.g I 0.856
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I 0.856
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I 0.856
Pavir.J00377 Panicum virgatum Pavir.J00377 I 0.856
Pavir.J14004 Panicum virgatum Pavir.J14004 I 0.856
BGIOSGA016651 Oryza indica BGIOSGA016651 I 0.851
BRADI3G48070 Brachypodium distachyon BRADI3G48070 I 0.851
LPERR04G13560 Leersia perrieri LPERR04G13560 I 0.851
MLOC_12058 Hordeum vulgare MLOC_12058 I 0.851
OB04G24170 Oryza brachyantha OB04G24170 I 0.851
OBART04G16900 Oryza barthii OBART04G16900 I 0.851
OGLUM04G16920 Oryza glumaepatula OGLUM04G16920 I 0.851
OMERI04G14260 Oryza meridionalis OMERI04G14260 I 0.851
ONIVA04G15000 Oryza nivara ONIVA04G15000 I 0.851
OPUNC04G14700 Oryza punctata OPUNC04G14700 I 0.851
ORGLA04G0140000 Oryza glaberrima ORGLA04G0140000 I 0.851
ORUFI04G18350 Oryza rufipogon ORUFI04G18350 I 0.851
OS04G0489600 Oryza sativa OS04G0489600 I 0.851
estExt_fgenesh1_pg.C_2130035 Physcomitrella patens estExt_fgenesh1_pg.C_2130035 N 0.851
Bostr.25993s0551 Boechera stricta Bostr.25993s0551 I 0.846
BHLH122 Arabidopsis thaliana AT1G51140 D 0.844
Bo4g191390 Brassica oleracea Bo4g191390 I 0.844
Bo6g024810 Brassica oleracea Bo6g024810 I 0.844
Bra016886 Brassica rapa Bra016886 I 0.844
Bra018896 Brassica rapa Bra018896 I 0.844
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I 0.844
GLYMA11G13960 Glycine max GLYMA11G13960 I 0.844
GLYMA12G05930 Glycine max GLYMA12G05930 I 0.844
GLYMA13G41670 Glycine max GLYMA13G41670 I 0.844
GLYMA15G03740 Glycine max GLYMA15G03740 I 0.844
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I 0.844
MTR_2g098310 Medicago truncatula MTR_2g098310 I 0.844
TCM_040564 Theobroma cacao TCM_040564 I 0.844
Ca_02662 Cicer arietinum Ca_02662 I 0.844
Ca_14223 Cicer arietinum Ca_14223 I 0.844
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I 0.844
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I 0.844
Carubv10009458m.g Capsella rubella Carubv10009458m.g I 0.844
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I 0.844
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I 0.844
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I 0.844
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I 0.844
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I 0.844
PK20089.1 Cannabis sativa PK20089.1 I 0.844