CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J08536
(
Panicum virgatum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Pavir.J08536
T050876_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN
NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.887
0.843
BHLH122
M06724_2.00
Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN
Dap-seq
OMalley et al.(2016)
bHLH122_col100_a
0.851
0.784
BHLH122
M06725_2.00
Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a
0.851
0.784
BHLH80
M06722_2.00
Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH80_col_a
0.845
0.725
BHLH80
M06723_2.00
Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH
Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a
0.845
0.725
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J08536.1.p
bHLH
44
94
ATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTADMLDLAVDHIRGLQ
Links
Other
bHLH
family TFs
Other
Panicum virgatum
TFs
231 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29216.m000261
Ricinus communis
29216.m000261
I
0.887
30149.m000231
Ricinus communis
30149.m000231
I
0.891
30152.m002405
Ricinus communis
30152.m002405
I
0.884
Aquca_009_00280
Aquilegia coerulea
Aquca_009_00280
I
0.887
Aquca_058_00134
Aquilegia coerulea
Aquca_058_00134
I
0.894
AT2G43140
Arabidopsis thaliana
AT2G43140
I
0.894
BGIOSGA008576
Oryza indica
BGIOSGA008576
I
0.914
BGIOSGA016651
Oryza indica
BGIOSGA016651
I
0.856
BGIOSGA028963
Oryza indica
BGIOSGA028963
I
0.887
BGIOSGA031008
Oryza indica
BGIOSGA031008
I
0.887
BHLH122
Arabidopsis thaliana
AT1G51140
D
0.851
BHLH80
Arabidopsis thaliana
AT1G35460
D
0.845
BHLH81
Arabidopsis thaliana
AT4G09180
I
0.845
Bo3g036400
Brassica oleracea
Bo3g036400
I
0.894
Bo4g019620
Brassica oleracea
Bo4g019620
I
0.894
Bo4g191390
Brassica oleracea
Bo4g191390
I
0.851
Bo4g194080
Brassica oleracea
Bo4g194080
N
0.856
Bo6g024810
Brassica oleracea
Bo6g024810
I
0.851
Bo6g043840
Brassica oleracea
Bo6g043840
I
0.845
Bo8g026850
Brassica oleracea
Bo8g026850
I
0.845
Bostr.1774s0027
Boechera stricta
Bostr.1774s0027
I
0.845
Bostr.25463s0393
Boechera stricta
Bostr.25463s0393
I
0.845
Bostr.25993s0461
Boechera stricta
Bostr.25993s0461
I
0.894
Bostr.26675s0074
Boechera stricta
Bostr.26675s0074
I
0.851
Bra000291
Brassica rapa
Bra000291
I
0.894
Bra004748
Brassica rapa
Bra004748
I
0.894
Bra016886
Brassica rapa
Bra016886
I
0.851
Bra018896
Brassica rapa
Bra018896
I
0.851
Bra028088
Brassica rapa
Bra028088
I
0.845
Bra036760
Brassica rapa
Bra036760
I
0.845
Bra037732
Brassica rapa
Bra037732
N
0.856
BRADI3G39927
Brachypodium distachyon
BRADI3G39927
I
0.887
BRADI3G48070
Brachypodium distachyon
BRADI3G48070
I
0.856
Cagra.18223s0002
Capsella grandiflora
Cagra.18223s0002
I
0.845
Cagra.2093s0006
Capsella grandiflora
Cagra.2093s0006
I
0.851
Cagra.3706s0004
Capsella grandiflora
Cagra.3706s0004
I
0.894
Cagra.9781s0002
Capsella grandiflora
Cagra.9781s0002
I
0.845
Carubv10001721m.g
Capsella rubella
Carubv10001721m.g
I
0.845
Carubv10009458m.g
Capsella rubella
Carubv10009458m.g
I
0.851
Carubv10010050m.g
Capsella rubella
Carubv10010050m.g
I
0.845
Carubv10023683m.g
Capsella rubella
Carubv10023683m.g
I
0.894
cassava13743.valid.m1
Manihot esculenta
cassava13743.valid.m1
I
0.845
cassava2126.valid.m1
Manihot esculenta
cassava2126.valid.m1
I
0.887
cassava29651.valid.m1
Manihot esculenta
cassava29651.valid.m1
I
0.884
cassava30692.valid.m1
Manihot esculenta
cassava30692.valid.m1
I
0.887
cassava35513.valid.m1
Manihot esculenta
cassava35513.valid.m1
I
0.891
cassava35967.valid.m1
Manihot esculenta
cassava35967.valid.m1
I
0.887
cassava36544.valid.m1
Manihot esculenta
cassava36544.valid.m1
I
0.839
cassava44054.valid.m1
Manihot esculenta
cassava44054.valid.m1
I
0.887
Ca_02662
Cicer arietinum
Ca_02662
I
0.851
Ca_14223
Cicer arietinum
Ca_14223
I
0.851
Ca_26916
Cicer arietinum
Ca_26916
I
0.854
chr1.CM0318.250.nd
Lotus japonicus
chr1.CM0318.250.nd
I
0.861
chr5.LjT42F22.20.nc
Lotus japonicus
chr5.LjT42F22.20.nc
I
0.894
Ciclev10002083m.g
Citrus clementina
Ciclev10002083m.g
I
0.845
Ciclev10005233m.g
Citrus clementina
Ciclev10005233m.g
I
0.887
Ciclev10015437m.g
Citrus clementina
Ciclev10015437m.g
I
0.851
Ciclev10031622m.g
Citrus clementina
Ciclev10031622m.g
I
0.858
Cla015469
Citrullus lanatus
Cla015469
I
0.867
Cla017792
Citrullus lanatus
Cla017792
I
0.887
Cucsa.050160
Cucumis sativus
Cucsa.050160
I
0.867
Cucsa.061590
Cucumis sativus
Cucsa.061590
I
0.845
Cucsa.242910
Cucumis sativus
Cucsa.242910
I
0.887
Eucgr.A02417
Eucalyptus grandis
Eucgr.A02417
I
0.887
Eucgr.B03669
Eucalyptus grandis
Eucgr.B03669
I
0.851
Eucgr.G03396
Eucalyptus grandis
Eucgr.G03396
I
0.851
Eucgr.J00796
Eucalyptus grandis
Eucgr.J00796
I
0.851
evm.TU.supercontig_84.89
Carica papaya
evm.TU.supercontig_84.89
I
0.887
evm.TU.supercontig_85.115
Carica papaya
evm.TU.supercontig_85.115
I
0.899
e_gw1.34.393.1
Physcomitrella patens
e_gw1.34.393.1
I
0.841
F775_24151
Aegilops tauschii
F775_24151
I
0.887
fgenesh2_kg.1__4183__AT1G51140.1
Arabidopsis lyrata
fgenesh2_kg.1__4183__AT1G51140.1
I
0.851
fgenesh2_kg.4__2475__AT2G43140.1
Arabidopsis lyrata
fgenesh2_kg.4__2475__AT2G43140.1
I
0.894
fgenesh2_kg.6__2924__AT4G09180.1
Arabidopsis lyrata
fgenesh2_kg.6__2924__AT4G09180.1
I
0.845
gene00545-v1.0-hybrid
Fragaria vesca
gene00545-v1.0-hybrid
I
0.887
gene20622-v1.0-hybrid
Fragaria vesca
gene20622-v1.0-hybrid
I
0.887
gene26880-v1.0-hybrid
Fragaria vesca
gene26880-v1.0-hybrid
I
0.845
gene26967-v1.0-hybrid
Fragaria vesca
gene26967-v1.0-hybrid
I
0.858
GLYMA02G29830
Glycine max
GLYMA02G29830
I
0.857
GLYMA08G16190
Glycine max
GLYMA08G16190
I
0.867
GLYMA08G26110
Glycine max
GLYMA08G26110
I
0.845
GLYMA10G12150
Glycine max
GLYMA10G12150
I
0.887
GLYMA11G13960
Glycine max
GLYMA11G13960
I
0.851
GLYMA12G05930
Glycine max
GLYMA12G05930
I
0.851
GLYMA12G36750
Glycine max
GLYMA12G36750
I
0.846
GLYMA13G27455
Glycine max
GLYMA13G27455
I
0.846
GLYMA13G41670
Glycine max
GLYMA13G41670
I
0.851
GLYMA15G03740
Glycine max
GLYMA15G03740
I
0.851
GLYMA15G42680
Glycine max
GLYMA15G42680
I
0.854
GLYMA19G32600
Glycine max
GLYMA19G32600
I
0.849
GLYMA20G39220
Glycine max
GLYMA20G39220
I
0.894
Gorai.002G228900
Gossypium raimondii
Gorai.002G228900
I
0.887
Gorai.004G035800
Gossypium raimondii
Gorai.004G035800
I
0.863
Gorai.006G140200
Gossypium raimondii
Gorai.006G140200
I
0.887
Gorai.009G071900
Gossypium raimondii
Gorai.009G071900
I
0.851
Gorai.011G144600
Gossypium raimondii
Gorai.011G144600
I
0.894
Gorai.013G138300
Gossypium raimondii
Gorai.013G138300
I
0.845
GRMZM2G085467
Zea mays
GRMZM2G085467
I
0.851
GRMZM2G417597
Zea mays
GRMZM2G417597
I
0.851
GRMZM2G437481
Zea mays
GRMZM2G437481
I
0.914
GSMUA_Achr3G11110_001
Musa acuminata
GSMUA_Achr3G11110_001
I
0.851
GSMUA_Achr5G22310_001
Musa acuminata
GSMUA_Achr5G22310_001
I
0.887
GSMUA_Achr6G21220_001
Musa acuminata
GSMUA_Achr6G21220_001
I
0.903
GSMUA_Achr7G20490_001
Musa acuminata
GSMUA_Achr7G20490_001
I
0.875
GSMUA_Achr9G27780_001
Musa acuminata
GSMUA_Achr9G27780_001
I
0.851
gw1.185.89.1
Physcomitrella patens
gw1.185.89.1
I
0.853
LPERR02G18900
Leersia perrieri
LPERR02G18900
I
0.914
LPERR04G13560
Leersia perrieri
LPERR04G13560
I
0.856
Lus10021023.g
Linum usitatissimum
Lus10021023.g
I
0.887
Lus10031255.g
Linum usitatissimum
Lus10031255.g
I
0.887
Lus10031826.g
Linum usitatissimum
Lus10031826.g
I
0.887
MDP0000180376
Malus domestica
MDP0000180376
I
0.887
MDP0000269890
Malus domestica
MDP0000269890
I
0.845
MDP0000273574
Malus domestica
MDP0000273574
I
0.894
mgf002701m
Mimulus guttatus
mgf002701m
I
0.845
mgf005043m
Mimulus guttatus
mgf005043m
I
0.894
mgf016734m
Mimulus guttatus
mgf016734m
I
0.887
mgf018372m
Mimulus guttatus
mgf018372m
N
0.849
MLOC_12058
Hordeum vulgare
MLOC_12058
I
0.856
MLOC_67834
Hordeum vulgare
MLOC_67834
I
0.887
MTR_2g098310
Medicago truncatula
MTR_2g098310
I
0.851
MTR_3g027650
Medicago truncatula
MTR_3g027650
I
0.846
MTR_3g028520
Medicago truncatula
MTR_3g028520
I
0.846
OB02G30670
Oryza brachyantha
OB02G30670
I
0.914
OB04G24170
Oryza brachyantha
OB04G24170
I
0.856
OB08G26810
Oryza brachyantha
OB08G26810
I
0.887
OBART02G23210
Oryza barthii
OBART02G23210
I
0.914
OBART04G16900
Oryza barthii
OBART04G16900
I
0.856
OBART08G19860
Oryza barthii
OBART08G19860
I
0.887
OBART09G14660
Oryza barthii
OBART09G14660
I
0.887
OGLUM04G16920
Oryza glumaepatula
OGLUM04G16920
I
0.856
OGLUM08G21000
Oryza glumaepatula
OGLUM08G21000
I
0.887
OGLUM09G15300
Oryza glumaepatula
OGLUM09G15300
I
0.887
OLONG_009256
Oryza longistaminata
OLONG_009256
I
0.914
OLONG_017566
Oryza longistaminata
OLONG_017566
I
0.887
OMERI02G22740
Oryza meridionalis
OMERI02G22740
I
0.914
OMERI04G14260
Oryza meridionalis
OMERI04G14260
I
0.856
OMERI08G16700
Oryza meridionalis
OMERI08G16700
I
0.887
OMERI09G11370
Oryza meridionalis
OMERI09G11370
I
0.887
ONIVA02G26110
Oryza nivara
ONIVA02G26110
I
0.914
ONIVA04G15000
Oryza nivara
ONIVA04G15000
I
0.856
ONIVA08G17500
Oryza nivara
ONIVA08G17500
I
0.887
ONIVA08G22410
Oryza nivara
ONIVA08G22410
I
0.887
OPUNC02G21170
Oryza punctata
OPUNC02G21170
I
0.914
OPUNC04G14700
Oryza punctata
OPUNC04G14700
I
0.856
OPUNC08G18020
Oryza punctata
OPUNC08G18020
I
0.887
OPUNC09G13060
Oryza punctata
OPUNC09G13060
I
0.887
orange1.1g015337m.g
Citrus sinensis
orange1.1g015337m.g
I
0.851
orange1.1g016638m.g
Citrus sinensis
orange1.1g016638m.g
I
0.858
orange1.1g018007m.g
Citrus sinensis
orange1.1g018007m.g
I
0.887
orange1.1g023215m.g
Citrus sinensis
orange1.1g023215m.g
I
0.845
ORGLA02G0200100
Oryza glaberrima
ORGLA02G0200100
I
0.914
ORGLA04G0140000
Oryza glaberrima
ORGLA04G0140000
I
0.856
ORGLA08G0174800
Oryza glaberrima
ORGLA08G0174800
I
0.887
ORGLA09G0112900
Oryza glaberrima
ORGLA09G0112900
I
0.887
ORUFI02G24640
Oryza rufipogon
ORUFI02G24640
I
0.914
ORUFI04G18350
Oryza rufipogon
ORUFI04G18350
I
0.856
ORUFI08G22260
Oryza rufipogon
ORUFI08G22260
I
0.887
ORUFI09G15820
Oryza rufipogon
ORUFI09G15820
I
0.887
OS04G0489600
Oryza sativa
OS04G0489600
I
0.856
OS08G0506700
Oryza sativa
OS08G0506700
D
0.887
OS09G0487900
Oryza sativa
OS09G0487900
I
0.887
Pavir.Aa01423
Panicum virgatum
Pavir.Aa01423
I
0.903
Pavir.Ab02229
Panicum virgatum
Pavir.Ab02229
I
0.914
Pavir.Ba01718
Panicum virgatum
Pavir.Ba01718
I
0.851
Pavir.Ga01365
Panicum virgatum
Pavir.Ga01365
I
0.914
Pavir.Gb01377
Panicum virgatum
Pavir.Gb01377
I
0.914
Pavir.J00377
Panicum virgatum
Pavir.J00377
I
0.851
Pavir.J14004
Panicum virgatum
Pavir.J14004
I
0.851
PDK_20s1391471g001
Phoenix dactylifera
PDK_20s1391471g001
I
0.887
PDK_20s1484071g001
Phoenix dactylifera
PDK_20s1484071g001
I
0.902
PDK_20s1630671g001
Phoenix dactylifera
PDK_20s1630671g001
I
0.902
PGSC0003DMG400006569
Solanum tuberosum
PGSC0003DMG400006569
I
0.894
PGSC0003DMG400008153
Solanum tuberosum
PGSC0003DMG400008153
I
0.887
PGSC0003DMG400025263
Solanum tuberosum
PGSC0003DMG400025263
I
0.884
PGSC0003DMG400031314
Solanum tuberosum
PGSC0003DMG400031314
I
0.845
PK06301.1
Cannabis sativa
PK06301.1
I
0.845
PK07850.1
Cannabis sativa
PK07850.1
I
0.894
PK18038.1
Cannabis sativa
PK18038.1
I
0.887
PK20089.1
Cannabis sativa
PK20089.1
I
0.851
Pm000447
Prunus mume
Pm000447
I
0.887
Pm004181
Prunus mume
Pm004181
I
0.845
Pm007619
Prunus mume
Pm007619
I
0.894
Pm016406
Prunus mume
Pm016406
I
0.845
Pm025821
Prunus mume
Pm025821
I
0.887
POPTR_0001s27680
Populus trichocarpa
POPTR_0001s27680
I
0.855
POPTR_0006s05640
Populus trichocarpa
POPTR_0006s05640
I
0.887
POPTR_0009s06910
Populus trichocarpa
POPTR_0009s06910
I
0.884
POPTR_0016s05100
Populus trichocarpa
POPTR_0016s05100
I
0.887
PRUPE_ppa006134mg
Prunus persica
PRUPE_ppa006134mg
I
0.845
PRUPE_ppa006295mg
Prunus persica
PRUPE_ppa006295mg
I
0.887
PRUPE_ppa011017mg
Prunus persica
PRUPE_ppa011017mg
I
0.845
PRUPE_ppa019977mg
Prunus persica
PRUPE_ppa019977mg
I
0.887
PRUPE_ppa025178mg
Prunus persica
PRUPE_ppa025178mg
I
0.894
SapurV1A.0018s0320
Salix purpurea
SapurV1A.0018s0320
I
0.887
SapurV1A.0027s0090
Salix purpurea
SapurV1A.0027s0090
I
0.854
SapurV1A.0071s0010
Salix purpurea
SapurV1A.0071s0010
I
0.873
SapurV1A.0111s0030
Salix purpurea
SapurV1A.0111s0030
I
0.897
SapurV1A.0133s0050
Salix purpurea
SapurV1A.0133s0050
I
0.887
SapurV1A.0391s0050
Salix purpurea
SapurV1A.0391s0050
I
0.845
SapurV1A.0402s0180
Salix purpurea
SapurV1A.0402s0180
I
0.873
SapurV1A.0529s0060
Salix purpurea
SapurV1A.0529s0060
I
0.894
SapurV1A.0690s0120
Salix purpurea
SapurV1A.0690s0120
I
0.845
SapurV1A.1647s0020
Salix purpurea
SapurV1A.1647s0020
I
0.845
SapurV1A.1898s0040
Salix purpurea
SapurV1A.1898s0040
I
0.897
Sb02g028300
Sorghum bicolor
Sb02g028300
I
0.851
Sb04g025260
Sorghum bicolor
Sb04g025260
I
0.914
Sb06g020810
Sorghum bicolor
Sb06g020810
I
0.914
scaffold_103992.1
Arabidopsis lyrata
scaffold_103992.1
I
0.845
Si010513m.g
Setaria italica
Si010513m.g
I
0.914
Si017194m.g
Setaria italica
Si017194m.g
I
0.884
Si029614m.g
Setaria italica
Si029614m.g
I
0.851
Solyc01g086870.2
Solanum lycopersicum
Solyc01g086870.2
I
0.884
Solyc06g065040.2
Solanum lycopersicum
Solyc06g065040.2
I
0.845
Solyc09g098110.2
Solanum lycopersicum
Solyc09g098110.2
I
0.894
Solyc10g079050.1
Solanum lycopersicum
Solyc10g079050.1
I
0.887
TCM_005925
Theobroma cacao
TCM_005925
I
0.863
TCM_020066
Theobroma cacao
TCM_020066
I
0.894
TCM_024842
Theobroma cacao
TCM_024842
I
0.887
TCM_036484
Theobroma cacao
TCM_036484
I
0.845
TCM_040564
Theobroma cacao
TCM_040564
I
0.851
Thhalv10011463m.g
Eutrema salsugineum
Thhalv10011463m.g
I
0.851
Thhalv10016998m.g
Eutrema salsugineum
Thhalv10016998m.g
I
0.894
Thhalv10028883m.g
Eutrema salsugineum
Thhalv10028883m.g
I
0.845
Traes_7AS_4FAB72487
Triticum aestivum
Traes_7AS_4FAB72487
I
0.887
Traes_7DS_B671A4EAD
Triticum aestivum
Traes_7DS_B671A4EAD
I
0.887
TRIUR3_26625
Triticum urartu
TRIUR3_26625
I
0.887
VIT_05s0124g00240
Vitis vinifera
VIT_05s0124g00240
I
0.894
VIT_08s0007g07810
Vitis vinifera
VIT_08s0007g07810
I
0.887
VIT_13s0064g01290
Vitis vinifera
VIT_13s0064g01290
I
0.884
VIT_18s0041g00690
Vitis vinifera
VIT_18s0041g00690
I
0.845