CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10029319m.g
(
Eutrema salsugineum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Thhalv10029319m.g
T051307_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10029319m
bHLH
172
212
KVRKEKLGDRITALQQLVSPFGKTDTASVLNEAVEYIKFLQ
Links
Other
bHLH
family TFs
Other
Eutrema salsugineum
TFs
231 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
27733.m000033
Ricinus communis
27733.m000033
N
0.878
28405.m000015
Ricinus communis
28405.m000015
N
0.859
29842.m003704
Ricinus communis
29842.m003704
N
0.879
30170.m014085
Ricinus communis
30170.m014085
N
0.903
Al_scaffold_0006_3588
Arabidopsis lyrata
Al_scaffold_0006_3588
N
0.914
Aquca_010_00556
Aquilegia coerulea
Aquca_010_00556
N
0.903
Aquca_028_00271
Aquilegia coerulea
Aquca_028_00271
N
0.879
BHLH110
Arabidopsis thaliana
AT1G27660
N
0.903
BHLH112
Arabidopsis thaliana
AT1G61660
N
0.841
BHLH154
Arabidopsis thaliana
AT2G31730
N
0.858
BHLH123
Arabidopsis thaliana
AT3G20640
N
0.878
AT4G05170
Arabidopsis thaliana
AT4G05170
N
0.914
BHLH103
Arabidopsis thaliana
AT4G21340
N
0.882
BGIOSGA000686
Oryza indica
BGIOSGA000686
N
0.879
BGIOSGA017200
Oryza indica
BGIOSGA017200
N
0.879
BGIOSGA020126
Oryza indica
BGIOSGA020126
N
0.879
BGIOSGA020128
Oryza indica
BGIOSGA020128
N
0.879
Bo01052s010
Brassica oleracea
Bo01052s010
N
0.878
Bo1g024090
Brassica oleracea
Bo1g024090
N
0.858
Bo1g098400
Brassica oleracea
Bo1g098400
N
0.841
Bo3g026410
Brassica oleracea
Bo3g026410
N
0.846
Bo3g076150
Brassica oleracea
Bo3g076150
N
0.878
Bo4g049510
Brassica oleracea
Bo4g049510
N
0.857
Bo9g041010
Brassica oleracea
Bo9g041010
N
0.841
Bo9g076250
Brassica oleracea
Bo9g076250
N
0.902
Bostr.10040s0018
Boechera stricta
Bostr.10040s0018
N
0.841
Bostr.10689s0083
Boechera stricta
Bostr.10689s0083
N
0.882
Bostr.19424s0583
Boechera stricta
Bostr.19424s0583
N
0.878
Bostr.26675s0184
Boechera stricta
Bostr.26675s0184
N
0.882
Bostr.2983s0058
Boechera stricta
Bostr.2983s0058
N
0.914
Bra001798
Brassica rapa
Bra001798
N
0.878
Bra005644
Brassica rapa
Bra005644
N
0.857
Bra013520
Brassica rapa
Bra013520
N
0.882
Bra027080
Brassica rapa
Bra027080
N
0.841
Bra029562
Brassica rapa
Bra029562
N
0.902
Bra031413
Brassica rapa
Bra031413
N
0.841
Bra035761
Brassica rapa
Bra035761
N
0.865
Cagra.0316s0001
Capsella grandiflora
Cagra.0316s0001
N
0.878
Cagra.1062s0002
Capsella grandiflora
Cagra.1062s0002
N
0.893
Cagra.1981s0012
Capsella grandiflora
Cagra.1981s0012
N
0.914
Cagra.2507s0001
Capsella grandiflora
Cagra.2507s0001
N
0.841
Carubv10003683m.g
Capsella rubella
Carubv10003683m.g
N
0.914
Carubv10006994m.g
Capsella rubella
Carubv10006994m.g
N
0.893
Carubv10013632m.g
Capsella rubella
Carubv10013632m.g
N
0.878
Carubv10020420m.g
Capsella rubella
Carubv10020420m.g
N
0.841
cassava13240.valid.m1
Manihot esculenta
cassava13240.valid.m1
N
0.879
cassava19346.valid.m1
Manihot esculenta
cassava19346.valid.m1
N
0.879
cassava21180.m1
Manihot esculenta
cassava21180.m1
N
0.859
cassava28105.m1
Manihot esculenta
cassava28105.m1
N
0.878
cassava36740.valid.m1
Manihot esculenta
cassava36740.valid.m1
N
0.859
cassava36956.valid.m1
Manihot esculenta
cassava36956.valid.m1
N
0.878
cassava37772.valid.m1
Manihot esculenta
cassava37772.valid.m1
N
0.859
cassava37773.valid.m1
Manihot esculenta
cassava37773.valid.m1
N
0.859
cassava42530.valid.m1
Manihot esculenta
cassava42530.valid.m1
N
0.903
Ca_00214
Cicer arietinum
Ca_00214
N
0.879
Ca_04928
Cicer arietinum
Ca_04928
N
0.903
Ca_06936
Cicer arietinum
Ca_06936
N
0.878
Ca_19891
Cicer arietinum
Ca_19891
N
0.878
chr5.CM0200.1030.nc
Lotus japonicus
chr5.CM0200.1030.nc
N
0.883
Ciclev10001291m.g
Citrus clementina
Ciclev10001291m.g
N
0.903
Ciclev10008228m.g
Citrus clementina
Ciclev10008228m.g
N
0.878
Ciclev10015039m.g
Citrus clementina
Ciclev10015039m.g
N
0.879
Cla003883
Citrullus lanatus
Cla003883
N
0.878
Cla021101
Citrullus lanatus
Cla021101
N
0.903
Cucsa.059580
Cucumis sativus
Cucsa.059580
N
0.878
Cucsa.125970
Cucumis sativus
Cucsa.125970
N
0.876
Cucsa.342640
Cucumis sativus
Cucsa.342640
N
0.903
Cucsa.359290
Cucumis sativus
Cucsa.359290
N
0.903
Eucgr.D00881
Eucalyptus grandis
Eucgr.D00881
N
0.902
Eucgr.E03614
Eucalyptus grandis
Eucgr.E03614
N
0.879
Eucgr.F03384
Eucalyptus grandis
Eucgr.F03384
N
0.878
evm.TU.supercontig_12.1
Carica papaya
evm.TU.supercontig_12.1
N
0.878
evm.TU.supercontig_27.162
Carica papaya
evm.TU.supercontig_27.162
N
0.879
evm.TU.supercontig_99.32
Carica papaya
evm.TU.supercontig_99.32
N
0.903
F775_12027
Aegilops tauschii
F775_12027
N
0.879
F775_20405
Aegilops tauschii
F775_20405
N
0.879
fgenesh2_kg.1__2924__AT1G27660.1
Arabidopsis lyrata
fgenesh2_kg.1__2924__AT1G27660.1
N
0.903
fgenesh2_kg.2__291__AT1G61660.1
Arabidopsis lyrata
fgenesh2_kg.2__291__AT1G61660.1
N
0.841
gene03259-v1.0-hybrid
Fragaria vesca
gene03259-v1.0-hybrid
N
0.878
gene11847-v1.0-hybrid
Fragaria vesca
gene11847-v1.0-hybrid
N
0.903
gene30665-v1.0-hybrid
Fragaria vesca
gene30665-v1.0-hybrid
N
0.879
GLYMA06G40760
Glycine max
GLYMA06G40760
N
0.878
GLYMA12G17630
Glycine max
GLYMA12G17630
N
0.878
GLYMA12G34490
Glycine max
GLYMA12G34490
N
0.878
GLYMA13G32320
Glycine max
GLYMA13G32320
N
0.879
GLYMA13G36010
Glycine max
GLYMA13G36010
N
0.878
GLYMA15G07010
Glycine max
GLYMA15G07010
N
0.879
GLYMA16G24661
Glycine max
GLYMA16G24661
N
0.866
Gorai.002G079200
Gossypium raimondii
Gorai.002G079200
N
0.878
Gorai.006G085000
Gossypium raimondii
Gorai.006G085000
N
0.879
Gorai.009G175300
Gossypium raimondii
Gorai.009G175300
N
0.879
Gorai.009G199600
Gossypium raimondii
Gorai.009G199600
N
0.903
Gorai.009G429100
Gossypium raimondii
Gorai.009G429100
N
0.878
Gorai.010G147100
Gossypium raimondii
Gorai.010G147100
N
0.879
Gorai.011G020100
Gossypium raimondii
Gorai.011G020100
N
0.879
GRMZM2G004732
Zea mays
GRMZM2G004732
N
0.879
GRMZM2G155217
Zea mays
GRMZM2G155217
N
0.879
GRMZM2G313058
Zea mays
GRMZM2G313058
N
0.879
GRMZM2G440529
Zea mays
GRMZM2G440529
N
0.879
GSMUA_Achr10G04860_001
Musa acuminata
GSMUA_Achr10G04860_001
N
0.879
GSMUA_Achr11G18680_001
Musa acuminata
GSMUA_Achr11G18680_001
N
0.879
GSMUA_Achr4G33630_001
Musa acuminata
GSMUA_Achr4G33630_001
N
0.879
GSMUA_Achr5G26430_001
Musa acuminata
GSMUA_Achr5G26430_001
N
0.879
GSMUA_Achr6G24280_001
Musa acuminata
GSMUA_Achr6G24280_001
N
0.903
GSMUA_Achr9G12100_001
Musa acuminata
GSMUA_Achr9G12100_001
N
0.879
GSMUA_Achr9G24670_001
Musa acuminata
GSMUA_Achr9G24670_001
N
0.879
LjSGA_014369.1
Lotus japonicus
LjSGA_014369.1
N
0.879
LjSGA_021413.2
Lotus japonicus
LjSGA_021413.2
N
0.901
LPERR01G28830
Leersia perrieri
LPERR01G28830
N
0.879
Lus10007613.g
Linum usitatissimum
Lus10007613.g
N
0.879
Lus10018400.g
Linum usitatissimum
Lus10018400.g
N
0.879
Lus10025987.g
Linum usitatissimum
Lus10025987.g
N
0.879
Lus10038550.g
Linum usitatissimum
Lus10038550.g
N
0.878
MDP0000168695
Malus domestica
MDP0000168695
N
0.903
MDP0000262020
Malus domestica
MDP0000262020
N
0.903
MDP0000295440
Malus domestica
MDP0000295440
N
0.878
MDP0000296508
Malus domestica
MDP0000296508
N
0.878
MDP0000301999
Malus domestica
MDP0000301999
N
0.879
MDP0000687814
Malus domestica
MDP0000687814
N
0.903
mgf001258m
Mimulus guttatus
mgf001258m
N
0.878
mgf008488m
Mimulus guttatus
mgf008488m
N
0.879
mgf013138m
Mimulus guttatus
mgf013138m
N
0.903
mgf016565m
Mimulus guttatus
mgf016565m
N
0.879
MLOC_37666
Hordeum vulgare
MLOC_37666
N
0.879
MLOC_57076
Hordeum vulgare
MLOC_57076
N
0.903
MLOC_72940
Hordeum vulgare
MLOC_72940
N
0.879
MTR_2g011070
Medicago truncatula
MTR_2g011070
N
0.879
MTR_2g081820
Medicago truncatula
MTR_2g081820
N
0.878
MTR_3g112170
Medicago truncatula
MTR_3g112170
N
0.903
MTR_8g466800
Medicago truncatula
MTR_8g466800
N
0.878
OB04G33270
Oryza brachyantha
OB04G33270
N
0.879
OB05G29420
Oryza brachyantha
OB05G29420
N
0.879
OB08G14900
Oryza brachyantha
OB08G14900
N
0.879
OBART01G33360
Oryza barthii
OBART01G33360
N
0.879
OBART04G24870
Oryza barthii
OBART04G24870
N
0.879
OBART05G21860
Oryza barthii
OBART05G21860
N
0.879
OGLUM01G37590
Oryza glumaepatula
OGLUM01G37590
N
0.879
OGLUM04G26290
Oryza glumaepatula
OGLUM04G26290
N
0.879
OGLUM05G23050
Oryza glumaepatula
OGLUM05G23050
N
0.879
OLONG_006510
Oryza longistaminata
OLONG_006510
N
0.879
OLONG_021979
Oryza longistaminata
OLONG_021979
N
0.903
OLONG_026655
Oryza longistaminata
OLONG_026655
N
0.879
OMERI01G30260
Oryza meridionalis
OMERI01G30260
N
0.879
OMERI04G21930
Oryza meridionalis
OMERI04G21930
N
0.879
OMERI12G12400
Oryza meridionalis
OMERI12G12400
N
0.879
ONIVA01G38120
Oryza nivara
ONIVA01G38120
N
0.879
ONIVA03G13290
Oryza nivara
ONIVA03G13290
N
0.879
ONIVA05G22530
Oryza nivara
ONIVA05G22530
N
0.879
OPUNC01G00360
Oryza punctata
OPUNC01G00360
N
0.903
OPUNC01G32440
Oryza punctata
OPUNC01G32440
N
0.879
OPUNC04G23980
Oryza punctata
OPUNC04G23980
N
0.879
orange1.1g011373m.g
Citrus sinensis
orange1.1g011373m.g
N
0.879
orange1.1g035657m.g
Citrus sinensis
orange1.1g035657m.g
N
0.903
ORGLA04G0213700
Oryza glaberrima
ORGLA04G0213700
N
0.879
ORGLA05G0190400
Oryza glaberrima
ORGLA05G0190400
N
0.879
ORUFI01G36520
Oryza rufipogon
ORUFI01G36520
N
0.879
ORUFI05G23130
Oryza rufipogon
ORUFI05G23130
N
0.879
ORUFI06G19010
Oryza rufipogon
ORUFI06G19010
N
0.879
OS04G0631600
Oryza sativa
OS04G0631600
N
0.879
Pavir.Ea03112
Panicum virgatum
Pavir.Ea03112
N
0.879
Pavir.Eb03429
Panicum virgatum
Pavir.Eb03429
N
0.879
Pavir.Ga00384
Panicum virgatum
Pavir.Ga00384
N
0.879
Pavir.J10443
Panicum virgatum
Pavir.J10443
N
0.879
Pavir.J13928
Panicum virgatum
Pavir.J13928
N
0.879
Pavir.J25904
Panicum virgatum
Pavir.J25904
N
0.879
PDK_20s1457351g001
Phoenix dactylifera
PDK_20s1457351g001
N
0.879
PDK_20s1709901g001
Phoenix dactylifera
PDK_20s1709901g001
N
0.903
PGSC0003DMG400003746
Solanum tuberosum
PGSC0003DMG400003746
N
0.903
PGSC0003DMG400005064
Solanum tuberosum
PGSC0003DMG400005064
N
0.878
PGSC0003DMG400013875
Solanum tuberosum
PGSC0003DMG400013875
N
0.879
PGSC0003DMG400019236
Solanum tuberosum
PGSC0003DMG400019236
N
0.878
PGSC0003DMG400025020
Solanum tuberosum
PGSC0003DMG400025020
N
0.878
PK14284.1
Cannabis sativa
PK14284.1
N
0.879
PK22680.1
Cannabis sativa
PK22680.1
N
0.878
Pm005865
Prunus mume
Pm005865
N
0.903
Pm007388
Prunus mume
Pm007388
N
0.859
Pm009855
Prunus mume
Pm009855
N
0.879
Pm011692
Prunus mume
Pm011692
N
0.878
POPTR_0002s03380
Populus trichocarpa
POPTR_0002s03380
N
0.903
POPTR_0004s02870
Populus trichocarpa
POPTR_0004s02870
N
0.879
POPTR_0005s12150
Populus trichocarpa
POPTR_0005s12150
N
0.879
POPTR_0005s25240
Populus trichocarpa
POPTR_0005s25240
N
0.903
POPTR_0007s13360
Populus trichocarpa
POPTR_0007s13360
N
0.879
POPTR_0011s03560
Populus trichocarpa
POPTR_0011s03560
N
0.879
POPTR_0011s13320
Populus trichocarpa
POPTR_0011s13320
N
0.878
POPTR_0013s13050
Populus trichocarpa
POPTR_0013s13050
N
0.859
POPTR_0019s12530
Populus trichocarpa
POPTR_0019s12530
N
0.859
PRUPE_ppa005486mg
Prunus persica
PRUPE_ppa005486mg
N
0.903
PRUPE_ppa005924mg
Prunus persica
PRUPE_ppa005924mg
N
0.879
PRUPE_ppa012528mg
Prunus persica
PRUPE_ppa012528mg
N
0.859
PRUPE_ppa023041mg
Prunus persica
PRUPE_ppa023041mg
N
0.878
SapurV1A.0006s0290
Salix purpurea
SapurV1A.0006s0290
N
0.903
SapurV1A.0028s0510
Salix purpurea
SapurV1A.0028s0510
N
0.879
SapurV1A.0188s0290
Salix purpurea
SapurV1A.0188s0290
N
0.903
SapurV1A.0388s0180
Salix purpurea
SapurV1A.0388s0180
N
0.859
SapurV1A.0441s0120
Salix purpurea
SapurV1A.0441s0120
N
0.879
SapurV1A.0658s0070
Salix purpurea
SapurV1A.0658s0070
N
0.854
SapurV1A.0694s0030
Salix purpurea
SapurV1A.0694s0030
N
0.878
SapurV1A.1304s0050
Salix purpurea
SapurV1A.1304s0050
N
0.879
SapurV1A.2213s0020
Salix purpurea
SapurV1A.2213s0020
N
0.854
Sb03g008830
Sorghum bicolor
Sb03g008830
N
0.903
Sb03g036670
Sorghum bicolor
Sb03g036670
N
0.879
Sb07g004980
Sorghum bicolor
Sb07g004980
N
0.879
Sb09g024720
Sorghum bicolor
Sb09g024720
N
0.879
Si001796m.g
Setaria italica
Si001796m.g
N
0.879
Si010139m.g
Setaria italica
Si010139m.g
N
0.879
Si013853m.g
Setaria italica
Si013853m.g
N
0.879
Si022548m.g
Setaria italica
Si022548m.g
N
0.879
Solyc02g079760.2
Solanum lycopersicum
Solyc02g079760.2
N
0.879
Solyc02g084880.2
Solanum lycopersicum
Solyc02g084880.2
N
0.903
Solyc03g031450.2
Solanum lycopersicum
Solyc03g031450.2
N
0.879
Solyc04g080710.2
Solanum lycopersicum
Solyc04g080710.2
N
0.903
Solyc07g063830.2
Solanum lycopersicum
Solyc07g063830.2
N
0.878
Solyc10g006640.2
Solanum lycopersicum
Solyc10g006640.2
N
0.878
TCM_019871
Theobroma cacao
TCM_019871
N
0.859
TCM_030051
Theobroma cacao
TCM_030051
N
0.879
TCM_031172
Theobroma cacao
TCM_031172
N
0.878
TCM_034098
Theobroma cacao
TCM_034098
N
0.903
Thhalv10017421m.g
Eutrema salsugineum
Thhalv10017421m.g
N
0.857
Thhalv10020666m.g
Eutrema salsugineum
Thhalv10020666m.g
N
0.878
Thhalv10023487m.g
Eutrema salsugineum
Thhalv10023487m.g
N
0.841
Traes_2AL_70AE1B8B8
Triticum aestivum
Traes_2AL_70AE1B8B8
N
0.879
Traes_2BL_A014BCC51
Triticum aestivum
Traes_2BL_A014BCC51
N
0.879
Traes_2BL_E82F7902D
Triticum aestivum
Traes_2BL_E82F7902D
N
0.879
Traes_2DL_DCD7B13A8
Triticum aestivum
Traes_2DL_DCD7B13A8
N
0.879
TRIUR3_00968
Triticum urartu
TRIUR3_00968
N
0.879
VIT_00s0274g00070
Vitis vinifera
VIT_00s0274g00070
N
0.879
VIT_04s0023g02410
Vitis vinifera
VIT_04s0023g02410
N
0.879
VIT_05s0094g00480
Vitis vinifera
VIT_05s0094g00480
N
0.882
VIT_18s0001g12970
Vitis vinifera
VIT_18s0001g12970
N
0.903
VIT_19s0014g04670
Vitis vinifera
VIT_19s0014g04670
N
0.878