CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SMU15024587
(
Schmidtea mediterranea
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
SMU15024587
T051700_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Fer1
M03620_2.00
Drosophila melanogaster
VDCASCTGHY
RDCAGSTGHB
SELEX
Nitta et al.(2015)
Fer1_1
0.890
0.904
Fer1
M05990_2.00
Drosophila melanogaster
HVCASMTGWCV
BGWCAKSTGBD
B1H
Zhu et al.(2011)
Fer1_da_SANGER_10_FBgn0037475
0.890
0.904
Fer1
M05991_2.00
Drosophila melanogaster
WYRHCAGCTGACG
CGTCAGCTGDYRW
B1H
Zhu et al.(2011)
Fer1_SANGER_5_FBgn0037475
0.890
0.904
PTF1A
M04156_2.00
Homo sapiens
AACAGCTGACRB
VYGTCAGCTGTT
SELEX
Yin et al.(2017)
PTF1A_eDBD_HT-SELEX
0.870
0.904
PTF1A
M08736_2.00
Homo sapiens
SCAGCTGBYNBNNYYYHN
NDRRRNNVNRVCAGCTGS
Misc
Kulakovskiy et al.(2013)
PTF1A_HUMAN.H11MO.0.B
0.870
0.904
Ptf1a
M08757_2.00
Mus musculus
SCAGCTGBYNBNNYYYHN
NDRRRNNVNRVCAGCTGS
Misc
Kulakovskiy et al.(2013)
PTF1A_MOUSE.H11MO.0.A
0.870
0.904
Ptf1a
M09470_2.00
Mus musculus
NVVCASSTGB
VCASSTGBBN
Misc
Heinz et al.(2010)
Panc1-Ptf1a_GSE47459
0.870
0.904
PTF1A
M04157_2.00
Homo sapiens
AMCAGCTGACRB
VYGTCAGCTGKT
SELEX
Yin et al.(2017)
PTF1A_eDBD_Methyl-HT-SELEX
0.870
0.904
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMU15024587
bHLH
103
155
QRQAANLRERRRMQSINEAFEGLRAHIPTLPYEKRLSKVDTLRLAIGYINFLQ
Links
Other
bHLH
family TFs
Other
Schmidtea mediterranea
TFs
126 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Alligator_sinensis_CCG003245.1
Alligator sinensis
Alligator_sinensis_CCG003245.1
I
Cmyd_10015601
Chelonia mydas
Cmyd_10015601
I
ENSAMXG00000017946
Astyanax mexicanus
ENSAMXG00000017946
I
ENSAPLG00000011008
Anas platyrhynchos
ENSAPLG00000011008
I
ENSBTAP00000035733-D1
Bos grunniens
ENSBTAP00000035733-D1
I
ENSCPOG00000024829
Cavia porcellus
ENSCPOG00000024829
I
ENSCSAG00000010775
Chlorocebus sabaeus
ENSCSAG00000010775
I
ENSFALG00000000874
Ficedula albicollis
ENSFALG00000000874
I
ENSGMOG00000008925
Gadus morhua
ENSGMOG00000008925
I
ENSLOCG00000005993
Lepisosteus oculatus
ENSLOCG00000005993
I
ENSMEUG00000005804
Macropus eugenii
ENSMEUG00000005804
I
ENSMMUG00000019103
Macaca mulatta
ENSMMUG00000019103
I
ENSMPUG00000004703
Mustela putorius furo
ENSMPUG00000004703
I
ENSNLEG00000003007
Nomascus leucogenys
ENSNLEG00000003007
I
ENSOARG00000010857
Ovis aries
ENSOARG00000010857
I
ENSONIG00000004814
Oreochromis niloticus
ENSONIG00000004814
I
ENSPANG00000010574
Papio anubis
ENSPANG00000010574
I
ENSPFOG00000001889
Poecilia formosa
ENSPFOG00000001889
I
ENSPSIG00000017106
Pelodiscus sinensis
ENSPSIG00000017106
I
ENSSHAG00000008804
Sarcophilus harrisii
ENSSHAG00000008804
I
ENSXMAG00000012740
Xiphophorus maculatus
ENSXMAG00000012740
I
Myotis_brandtii_ZBTB7A_10016304
Myotis brandtii
Myotis_brandtii_ZBTB7A_10016304
I
Ogr12162
Ophisaurus gracilis
Ogr12162
I
Pvit_09830
Pogona vitticeps
Pvit_09830
I
Zbtb7a
Rattus norvegicus
ENSRNOG00000020161
I
ZBTB7A
Canis familiaris
ENSCAFG00000024335
I
ZBTB7A
Callithrix jacchus
ENSCJAG00000036210
I
zbtb7a
Danio rerio
ENSDARG00000039899
I
ZBTB7A
Tursiops truncatus
ENSTTRG00000006780
I
zbtb7a
Takifugu rubripes
ENSTRUG00000017896
I
zbtb7a
Tetraodon nigroviridis
ENSTNIG00000004415
I
ZBTB7A
Sus scrofa
ENSSSCG00000029236
I
ZBTB7A
Monodelphis domestica
ENSMODG00000000778
I
ZBTB7A
Pteropus vampyrus
ENSPVAG00000017500
I
ZBTB7A
Pan troglodytes
ENSPTRG00000010292
I
ZBTB7A
Otolemur garnettii
ENSOGAG00000033963
I
ZBTB7A
Homo sapiens
ENSG00000178951
D
ZBTB7A
Ornithorhynchus anatinus
ENSOANG00000006290
I
zbtb7a
Gasterosteus aculeatus
ENSGACG00000012730
I
Zbtb7a
Mus musculus
ENSMUSG00000035011
D
ZBTB7A
Myotis lucifugus
ENSMLUG00000008667
I