CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
SMU15032200
(
Schmidtea mediterranea
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
SMU15032200
T051716_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FERD3L
M04140_2.00
Homo sapiens
GYVACAGCTGKYRC
GYRMCAGCTGTBRC
SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_1
0.857
0.827
FERD3L
M04141_2.00
Homo sapiens
GTRMCAKMTGKYRC
GYRMCAKMTGKYAC
SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_2
0.857
0.827
FERD3L
M04142_2.00
Homo sapiens
GTVACAGCTGKYRC
GYRMCAGCTGTBAC
SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_1
0.857
0.827
FERD3L
M04143_2.00
Homo sapiens
GTRMCAKMTGKYRC
GYRMCAKMTGKYAC
SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_2
0.857
0.827
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMU15032200
bHLH
127
179
QRHAANIRERRRMNNLNKAFDRLRQLVPTFAYEKQLSRIETLRLAITYISFMT
Links
Other
bHLH
family TFs
Other
Schmidtea mediterranea
TFs
64 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACYPI54231
Acyrthosiphon pisum
ACYPI54231
I
0.857
ENSAMEG00000019030
Ailuropoda melanoleuca
ENSAMEG00000019030
I
0.857
ENSAPLG00000001417
Anas platyrhynchos
ENSAPLG00000001417
I
0.857
FERD3L
Bos taurus
ENSBTAG00000039955
I
0.857
FERD3L
Canis familiaris
ENSCAFG00000002506
I
0.857
ENSCSAG00000019609
Chlorocebus sabaeus
ENSCSAG00000019609
I
0.857
FERD3L
Dasypus novemcinctus
ENSDNOG00000037813
I
0.857
Ferd3l
Dipodomys ordii
ENSDORG00000012867
I
0.857
FERD3L
Equus caballus
ENSECAG00000002518
I
0.857
FERD3L
Erinaceus europaeus
ENSEEUG00000004309
I
0.857
ENSFALG00000014487
Ficedula albicollis
ENSFALG00000014487
I
0.857
FERD3L
Felis catus
ENSFCAG00000010289
I
0.857
FERD3L
Homo sapiens
ENSG00000146618
D
0.857
FERD3L
Gallus gallus
ENSGALG00000010862
I
0.857
FERD3L
Gorilla gorilla
ENSGGOG00000021943
I
0.857
ENSLACG00000013215
Latimeria chalumnae
ENSLACG00000013215
I
0.857
FERD3L
Loxodonta africana
ENSLAFG00000012782
I
0.857
ENSMEUG00000016077
Macropus eugenii
ENSMEUG00000016077
I
0.857
FERD3L
Meleagris gallopavo
ENSMGAG00000015843
I
0.857
ENSMICG00000010110
Microcebus murinus
ENSMICG00000010110
I
0.857
FERD3L
Myotis lucifugus
ENSMLUG00000006930
I
0.857
FERD3L
Macaca mulatta
ENSMMUG00000011174
I
0.857
FERD3L
Monodelphis domestica
ENSMODG00000001405
I
0.857
Ferd3l
Mus musculus
ENSMUSG00000046518
I
0.857
ENSNLEG00000019265
Nomascus leucogenys
ENSNLEG00000019265
I
0.857
FERD3L
Ornithorhynchus anatinus
ENSOANG00000009615
I
0.857
ENSOARG00000008159
Ovis aries
ENSOARG00000008159
I
0.857
FERD3L
Oryctolagus cuniculus
ENSOCUG00000016121
I
0.857
FERD3L
Otolemur garnettii
ENSOGAG00000014773
I
0.857
FERD3L
Ochotona princeps
ENSOPRG00000004265
I
0.857
ENSPANG00000010936
Papio anubis
ENSPANG00000010936
I
0.857
FERD3L
Procavia capensis
ENSPCAG00000013680
I
0.857
ENSPPYG00000017753
Pongo abelii
ENSPPYG00000017753
I
0.857
ENSPSIG00000000691
Pelodiscus sinensis
ENSPSIG00000000691
I
0.857
FERD3L
Pan troglodytes
ENSPTRG00000018961
I
0.857
FERD3L
Pteropus vampyrus
ENSPVAG00000001711
I
0.857
Ferd3l
Rattus norvegicus
ENSRNOG00000011091
I
0.857
ENSSHAG00000013034
Sarcophilus harrisii
ENSSHAG00000013034
I
0.857
FERD3L
Sus scrofa
ENSSSCG00000015371
I
0.857
ENSSTOG00000025739
Ictidomys tridecemlineatus
ENSSTOG00000025739
I
0.857
FERD3L
Tupaia belangeri
ENSTBEG00000003400
I
0.857
FERD3L
Taeniopygia guttata
ENSTGUG00000002644
I
0.857
ENSTSYG00000010121
Tarsius syrichta
ENSTSYG00000010121
I
0.857
SMAR006706
Strigamia maritima
SMAR006706
I
0.857
YQE_05939
Dendroctonus ponderosae
YQE_05939
I
0.857
Aan_R001045
Calypte anna
Aan_R001045
I
0.857
Afo_R003467
Aptenodytes forsteri
Afo_R003467
I
0.857
Alligator_sinensis_CCG002586.1
Alligator sinensis
Alligator_sinensis_CCG002586.1
I
0.857
Brh_R002964
Buceros rhinoceros
Brh_R002964
I
0.857
Cmyd_10011491
Chelonia mydas
Cmyd_10011491
I
0.857
ENSP00000275461-D1
Bos grunniens
ENSP00000275461-D1
I
0.857
ENSP00000275461
Macaca fascicularis
ENSP00000275461
I
0.857
Gfo_R002784
Geospiza fortis
Gfo_R002784
I
0.857
Myotis_brandtii_FERD3L_10031741
Myotis brandtii
Myotis_brandtii_FERD3L_10031741
I
0.857
Ogr11551
Ophisaurus gracilis
Ogr11551
I
0.857
Ocbimv22002150m.g
Octopus bimaculoides
Ocbimv22002150m.g
I
0.857
LCUP001463
Lucilia cuprina
LCUP001463
I
0.857
ferd3l
Xenopus tropicalis
XB-GENE-983144
I
0.857
LLOJ008652
Lutzomyia longipalpis
LLOJ008652
I
0.857
MDOA004267
Musca domestica
MDOA004267
I
0.857
MDOA011992
Musca domestica
MDOA011992
I
0.857
PPAI004805
Phlebotomus papatasi
PPAI004805
I
0.857
SMAR003412
Strigamia maritima
SMAR003412
I
0.852
LotgiG70434
Lottia gigantea
LotgiG70434
I
0.846