CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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tcf4
(
Xenopus tropicalis
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
XB-GENE-1011628
T051763_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN
NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.914
1.000
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN
NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.914
1.000
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN
NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.914
1.000
TCF4
M02728_2.00
Homo sapiens
RCACCTG
CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.914
1.000
TCF4
M04214_2.00
Homo sapiens
VCACCTGB
VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.914
1.000
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB
VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.914
1.000
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.914
1.000
TCF4
M04215_2.00
Homo sapiens
VCACCTGN
NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.914
1.000
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB
VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.912
0.962
TCF12
M04137_2.00
Homo sapiens
VCACSTGB
VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.912
0.962
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.912
0.962
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.912
0.962
TCF12
M07806_2.00
Homo sapiens
VCASCTGB
VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.912
0.962
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH
DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.912
0.962
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH
DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.912
0.962
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB
VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.912
0.962
TCF12
M09858_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.912
0.962
TCF12
M09859_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.912
0.962
TCF12
M09860_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.912
0.962
TCF12
M09861_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.912
0.962
TCF12
M09862_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.912
0.962
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN
NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.912
0.962
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN
NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.912
0.885
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB
VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.912
0.885
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB
VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.912
0.885
Tcf3
M09465_2.00
Mus musculus
ABWTCAAAGS
SCTTTGAWVT
Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724
0.884
0.923
Tcf3
M09466_2.00
Mus musculus
VCAGCTGBNN
NNVCAGCTGB
Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978
0.884
0.923
Tcf3
M09886_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E47_05
0.884
0.923
TCF3
M02775_2.00
Homo sapiens
NVCACCTGBN
NVCAGGTGBN
SELEX
Jolma et al.(2013)
TCF3_1
0.884
0.885
TCF3
M08710_2.00
Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB
Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A
0.884
0.885
TCF3
M09791_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E12_Q6
0.884
0.885
TCF3
M09792_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_01
0.884
0.885
TCF3
M09793_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_02
0.884
0.885
TCF3
M09794_2.00
Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB
Transfac
Matys et al.(2006)
V$E47_01
0.884
0.885
TCF3
M09795_2.00
Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN
Transfac
Matys et al.(2006)
V$E47_02
0.884
0.885
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAI21472
bHLH
563
616
RRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLE
Links
Other
bHLH
family TFs
Other
Xenopus tropicalis
TFs
212 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
RREB1
Homo sapiens
ENSG00000124782
D
RREB1
Anolis carolinensis
ENSACAG00000000520
I
RREB1
Pan troglodytes
ENSPTRG00000017697
I
RREB1
Pteropus vampyrus
ENSPVAG00000014081
I
ENSPPYG00000016204
Pongo abelii
ENSPPYG00000016204
I
ENSPANG00000019553
Papio anubis
ENSPANG00000019553
I
Rreb1
Rattus norvegicus
ENSRNOG00000015701
I
ENSNLEG00000011554
Nomascus leucogenys
ENSNLEG00000011554
I
Rreb1
Mus musculus
ENSMUSG00000039087
I
ENSMPUG00000000558
Mustela putorius furo
ENSMPUG00000000558
I
RREB1
Monodelphis domestica
ENSMODG00000009892
I
RREB1
Macaca mulatta
ENSMMUG00000007852
I
ENSMEUG00000015377
Macropus eugenii
ENSMEUG00000015377
I
RREB1
Loxodonta africana
ENSLAFG00000005300
I
RREB1
Gorilla gorilla
ENSGGOG00000004561
I
RREB1
Felis catus
ENSFCAG00000030069
I
Cmyd_10003405
Chelonia mydas
Cmyd_10003405
I
ENSP00000369270
Macaca fascicularis
ENSP00000369270
I
ENSCSAG00000007376
Chlorocebus sabaeus
ENSCSAG00000007376
I
RREB1
Canis familiaris
ENSCAFG00000009527
I
Aan_R012638
Calypte anna
Aan_R012638
N
RREB1
Taeniopygia guttata
ENSTGUG00000002309
N
Afo_R014721
Aptenodytes forsteri
Afo_R014721
N
ENSSHAG00000005295
Sarcophilus harrisii
ENSSHAG00000005295
N
Gfo_R006486
Geospiza fortis
Gfo_R006486
N
Myotis_brandtii_RREB1_10008109
Myotis brandtii
Myotis_brandtii_RREB1_10008109
N
ENSPSIG00000006582
Pelodiscus sinensis
ENSPSIG00000006582
N
RREB1
Ochotona princeps
ENSOPRG00000001966
N
RREB1
Otolemur garnettii
ENSOGAG00000025755
N
RREB1
Myotis lucifugus
ENSMLUG00000013153
N
RREB1
Meleagris gallopavo
ENSMGAG00000003910
N
RREB1
Gallus gallus
ENSGALG00000012799
N
ENSFALG00000013231
Ficedula albicollis
ENSFALG00000013231
N
RREB1
Equus caballus
ENSECAG00000018169
N
RREB1
Cavia porcellus
ENSCPOG00000014380
N
ENSAPLG00000004726
Anas platyrhynchos
ENSAPLG00000004726
N