CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
tcf12
(
Xenopus laevis
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
XB-GENE-5799694
T051819_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB
VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.894
0.923
TCF12
M04137_2.00
Homo sapiens
VCACSTGB
VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.894
0.923
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.894
0.923
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.894
0.923
TCF12
M07806_2.00
Homo sapiens
VCASCTGB
VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.894
0.923
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH
DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.894
0.923
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH
DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.894
0.923
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB
VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.894
0.923
TCF12
M09858_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.894
0.923
TCF12
M09859_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.894
0.923
TCF12
M09860_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.894
0.923
TCF12
M09861_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.894
0.923
TCF12
M09862_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.894
0.923
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN
NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.894
0.923
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN
NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.894
0.846
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB
VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.894
0.846
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB
VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.894
0.846
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN
NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.892
0.885
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN
NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.892
0.885
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN
NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.892
0.885
TCF4
M02728_2.00
Homo sapiens
RCACCTG
CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.892
0.885
TCF4
M04214_2.00
Homo sapiens
VCACCTGB
VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.892
0.885
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB
VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.892
0.885
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.892
0.885
TCF4
M04215_2.00
Homo sapiens
VCACCTGN
NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.892
0.885
TCF3
M02775_2.00
Homo sapiens
NVCACCTGBN
NVCAGGTGBN
SELEX
Jolma et al.(2013)
TCF3_1
0.866
0.923
TCF3
M08710_2.00
Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB
Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A
0.866
0.923
TCF3
M09791_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E12_Q6
0.866
0.923
TCF3
M09792_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_01
0.866
0.923
TCF3
M09793_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_02
0.866
0.923
TCF3
M09794_2.00
Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB
Transfac
Matys et al.(2006)
V$E47_01
0.866
0.923
TCF3
M09795_2.00
Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN
Transfac
Matys et al.(2006)
V$E47_02
0.866
0.923
Tcf3
M09465_2.00
Mus musculus
ABWTCAAAGS
SCTTTGAWVT
Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724
0.866
0.885
Tcf3
M09466_2.00
Mus musculus
VCAGCTGBNN
NNVCAGCTGB
Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978
0.866
0.885
Tcf3
M09886_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E47_05
0.866
0.885
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH82432
bHLH
580
633
RRMANNTRERLRVRDINGAFKELGRMCQLHLKSEKPQTKLLILHQAVSVILNLE
Links
Other
bHLH
family TFs
Other
Xenopus laevis
TFs
203 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aan_R009606
Calypte anna
Aan_R009606
I
Afo_R005157
Aptenodytes forsteri
Afo_R005157
I
Afo_R005555
Aptenodytes forsteri
Afo_R005555
I
Alligator_sinensis_CCG009102.1
Alligator sinensis
Alligator_sinensis_CCG009102.1
I
Alligator_sinensis_CCG011017.1
Alligator sinensis
Alligator_sinensis_CCG011017.1
I
Aqu1.218726
Amphimedon queenslandica
Aqu1.218726
I
Brh_R005579
Buceros rhinoceros
Brh_R005579
I
Brh_R011837
Buceros rhinoceros
Brh_R011837
I
CapteG182542
Capitella teleta
CapteG182542
I
CapteG228069
Capitella teleta
CapteG228069
I
CGI_10018323
Crassostrea gigas
CGI_10018323
I
CLEC011631
Cimex lectularius
CLEC011631
N
Cmyd_10005434
Chelonia mydas
Cmyd_10005434
I
Cmyd_10006677
Chelonia mydas
Cmyd_10006677
I
DAPPUDRAFT_347250
Daphnia pulex
DAPPUDRAFT_347250
N
HEY2
Anolis carolinensis
ENSACAG00000001813
I
ENSAMEG00000009592
Ailuropoda melanoleuca
ENSAMEG00000009592
I
ENSAMEG00000011612
Ailuropoda melanoleuca
ENSAMEG00000011612
I
ENSAMXG00000011148
Astyanax mexicanus
ENSAMXG00000011148
N
ENSAMXG00000011237
Astyanax mexicanus
ENSAMXG00000011237
I
ENSAMXG00000018013
Astyanax mexicanus
ENSAMXG00000018013
I
ENSAPLG00000003195
Anas platyrhynchos
ENSAPLG00000003195
I
ENSAPLG00000007121
Anas platyrhynchos
ENSAPLG00000007121
I
HEY2
Bos taurus
ENSBTAG00000000919
I
HEYL
Bos taurus
ENSBTAG00000008688
I
HEY1
Bos taurus
ENSBTAG00000015717
I
PABPC4
Canis familiaris
ENSCAFG00000003081
I
HEY1
Canis familiaris
ENSCAFG00000008391
I
ENSCAFG00000032212
Canis familiaris
ENSCAFG00000032212
I
HEY1
Callithrix jacchus
ENSCJAG00000000477
I
HEY2
Callithrix jacchus
ENSCJAG00000003761
I
ENSCPOG00000000704
Cavia porcellus
ENSCPOG00000000704
I
HEY1
Cavia porcellus
ENSCPOG00000008527
I
HEY2
Cavia porcellus
ENSCPOG00000021417
I
ENSCSAG00000001134
Chlorocebus sabaeus
ENSCSAG00000001134
I
ENSCSAG00000013410
Chlorocebus sabaeus
ENSCSAG00000013410
I
ENSCSAG00000016312
Chlorocebus sabaeus
ENSCSAG00000016312
I
hey2
Danio rerio
ENSDARG00000013441
I
heyl
Danio rerio
ENSDARG00000055798
I
hey1
Danio rerio
ENSDARG00000070538
I
HEYL
Dasypus novemcinctus
ENSDNOG00000010392
I
HEY1
Dasypus novemcinctus
ENSDNOG00000031981
I
HEY2
Dasypus novemcinctus
ENSDNOG00000044967
I
ENSDORG00000009001
Dipodomys ordii
ENSDORG00000009001
I
HEYL
Equus caballus
ENSECAG00000007220
I
HEY2
Equus caballus
ENSECAG00000014094
I
HEY1
Equus caballus
ENSECAG00000017010
I
HEY2
Erinaceus europaeus
ENSEEUG00000014040
I
HEY2
Echinops telfairi
ENSETEG00000007340
I
ENSFALG00000000542
Ficedula albicollis
ENSFALG00000000542
I
ENSFALG00000008605
Ficedula albicollis
ENSFALG00000008605
I
ENSFALG00000011461
Ficedula albicollis
ENSFALG00000011461
I
HEYL
Felis catus
ENSFCAG00000010963
I
HEY1
Felis catus
ENSFCAG00000025542
I
HEY2
Felis catus
ENSFCAG00000026914
I
HEY2
Homo sapiens
ENSG00000135547
D
HEYL
Homo sapiens
ENSG00000163909
I
HEY1
Homo sapiens
ENSG00000164683
D
hey1
Gasterosteus aculeatus
ENSGACG00000003436
I
heyl
Gasterosteus aculeatus
ENSGACG00000007492
I
HEY1
Gasterosteus aculeatus
ENSGACG00000008712
I
ENSGALG00000021593
Gallus gallus
ENSGALG00000021593
I
HEYL
Gorilla gorilla
ENSGGOG00000008268
I
HEY1
Gorilla gorilla
ENSGGOG00000009960
I
ENSGMOG00000011084
Gadus morhua
ENSGMOG00000011084
I
ENSGMOG00000013488
Gadus morhua
ENSGMOG00000013488
I
ENSGMOG00000017811
Gadus morhua
ENSGMOG00000017811
I
ENSLACG00000006098
Latimeria chalumnae
ENSLACG00000006098
I
ENSLACG00000012215
Latimeria chalumnae
ENSLACG00000012215
I
ENSLACG00000015540
Latimeria chalumnae
ENSLACG00000015540
I
HEY1
Loxodonta africana
ENSLAFG00000011488
I
HEY2
Loxodonta africana
ENSLAFG00000014208
I
HEYL
Loxodonta africana
ENSLAFG00000027563
I
ENSLOCG00000001853
Lepisosteus oculatus
ENSLOCG00000001853
I
ENSLOCG00000017268
Lepisosteus oculatus
ENSLOCG00000017268
I
ENSMEUG00000007444
Macropus eugenii
ENSMEUG00000007444
I
HEY2
Meleagris gallopavo
ENSMGAG00000013281
I
HEY2
Myotis lucifugus
ENSMLUG00000002617
I
HEYL
Myotis lucifugus
ENSMLUG00000029490
I
HEY1
Macaca mulatta
ENSMMUG00000002740
I
HEY2
Macaca mulatta
ENSMMUG00000009491
I
HEYL
Macaca mulatta
ENSMMUG00000018861
I
HEY1
Monodelphis domestica
ENSMODG00000006648
I
HEY2
Monodelphis domestica
ENSMODG00000017701
I
ENSMPUG00000001859
Mustela putorius furo
ENSMPUG00000001859
I
ENSMPUG00000014412
Mustela putorius furo
ENSMPUG00000014412
I
ENSMPUG00000014531
Mustela putorius furo
ENSMPUG00000014531
I
Hey2
Mus musculus
ENSMUSG00000019789
D
Heyl
Mus musculus
ENSMUSG00000032744
I
Hey1
Mus musculus
ENSMUSG00000040289
I
ENSNLEG00000002239
Nomascus leucogenys
ENSNLEG00000002239
I
ENSNLEG00000013972
Nomascus leucogenys
ENSNLEG00000013972
I
HEYL
Ornithorhynchus anatinus
ENSOANG00000010000
I
ENSOANG00000022119
Ornithorhynchus anatinus
ENSOANG00000022119
I
ENSOARG00000007915
Ovis aries
ENSOARG00000007915
I
ENSOARG00000008063
Ovis aries
ENSOARG00000008063
I
ENSOARG00000020088
Ovis aries
ENSOARG00000020088
I
HEYL
Oryctolagus cuniculus
ENSOCUG00000000560
I
HEY1
Otolemur garnettii
ENSOGAG00000007210
I
HEY2
Otolemur garnettii
ENSOGAG00000027812
I
HEYL
Otolemur garnettii
ENSOGAG00000030877
I
ENSONIG00000002623
Oreochromis niloticus
ENSONIG00000002623
I
ENSONIG00000003087
Oreochromis niloticus
ENSONIG00000003087
I
HEY1
Oryzias latipes
ENSORLG00000008268
I
hey1
Oryzias latipes
ENSORLG00000012953
I
heyl
Oryzias latipes
ENSORLG00000013651
I
ENSP00000338272
Macaca fascicularis
ENSP00000338272
I
ENSP00000357348
Macaca fascicularis
ENSP00000357348
I
ENSP00000357348-D1
Bos grunniens
ENSP00000357348-D1
I
ENSP00000361943
Macaca fascicularis
ENSP00000361943
I
ENSP00000361943-D1
Bos grunniens
ENSP00000361943-D1
I
ENSPANG00000006227
Papio anubis
ENSPANG00000006227
I
ENSPANG00000018687
Papio anubis
ENSPANG00000018687
I
ENSPFOG00000001913
Poecilia formosa
ENSPFOG00000001913
I
ENSPFOG00000014160
Poecilia formosa
ENSPFOG00000014160
I
ENSPFOG00000015536
Poecilia formosa
ENSPFOG00000015536
I
ENSPPYG00000001505
Pongo abelii
ENSPPYG00000001505
I
ENSPPYG00000016987
Pongo abelii
ENSPPYG00000016987
I
ENSPPYG00000018693
Pongo abelii
ENSPPYG00000018693
I
ENSPSIG00000003791
Pelodiscus sinensis
ENSPSIG00000003791
I
ENSPSIG00000012495
Pelodiscus sinensis
ENSPSIG00000012495
I
HEYL
Pan troglodytes
ENSPTRG00000000574
I
HEY2
Pan troglodytes
ENSPTRG00000018574
I
HEY1
Pan troglodytes
ENSPTRG00000020364
I
Hey1
Rattus norvegicus
ENSRNOG00000011593
I
Hey2
Rattus norvegicus
ENSRNOG00000013364
I
Heyl
Rattus norvegicus
ENSRNOG00000015318
I
HEY2
Sorex araneus
ENSSARG00000011755
I
ENSSHAG00000016487
Sarcophilus harrisii
ENSSHAG00000016487
I
ENSSHAG00000017958
Sarcophilus harrisii
ENSSHAG00000017958
I
ENSSHAG00000018213
Sarcophilus harrisii
ENSSHAG00000018213
I
HEY2
Sus scrofa
ENSSSCG00000004223
I
HEY1
Sus scrofa
ENSSSCG00000006159
I
ENSSSCG00000024651
Sus scrofa
ENSSSCG00000024651
I
ENSSTOG00000022371
Ictidomys tridecemlineatus
ENSSTOG00000022371
I
ENSSTOG00000023191
Ictidomys tridecemlineatus
ENSSTOG00000023191
I
HEY2
Tupaia belangeri
ENSTBEG00000008836
I
HEY2
Taeniopygia guttata
ENSTGUG00000011792
I
heyl
Tetraodon nigroviridis
ENSTNIG00000009228
I
hey1
Tetraodon nigroviridis
ENSTNIG00000017785
I
HEY1
Tetraodon nigroviridis
ENSTNIG00000018401
I
heyl
Takifugu rubripes
ENSTRUG00000003399
I
HEY1
Takifugu rubripes
ENSTRUG00000013573
I
hey1
Takifugu rubripes
ENSTRUG00000014561
I
HEYL
Tursiops truncatus
ENSTTRG00000014353
I
HEY2
Vicugna pacos
ENSVPAG00000010498
I
ENSXMAG00000003593
Xiphophorus maculatus
ENSXMAG00000003593
I
ENSXMAG00000006950
Xiphophorus maculatus
ENSXMAG00000006950
I
ENSXMAG00000014241
Xiphophorus maculatus
ENSXMAG00000014241
I
Gfo_R007552
Geospiza fortis
Gfo_R007552
I
Gfo_R016187
Geospiza fortis
Gfo_R016187
I
ISCW011251
Ixodes scapularis
ISCW011251
I
L798_14068
Zootermopsis nevadensis
L798_14068
I
LDEC001043
Leptinotarsa decemlineata
LDEC001043
I
LotgiG171867
Lottia gigantea
LotgiG171867
I
Myotis_brandtii_HEY1_10021379
Myotis brandtii
Myotis_brandtii_HEY1_10021379
I
Myotis_brandtii_hey2_10035635
Myotis brandtii
Myotis_brandtii_hey2_10035635
I
Ocbimv22039104m.g
Octopus bimaculoides
Ocbimv22039104m.g
I
Ogr14041
Ophisaurus gracilis
Ogr14041
I
Ogr15033
Ophisaurus gracilis
Ogr15033
I
PHUM454530
Pediculus humanus
PHUM454530
I
Pvit_00065
Pogona vitticeps
Pvit_00065
I
Pvit_01735
Pogona vitticeps
Pvit_01735
I
Sakowv30023592m.g
Saccoglossus kowalevskii
Sakowv30023592m.g
I
SPU_009465
Strongylocentrotus purpuratus
SPU_009465
I
TC001593
Tribolium castaneum
TC001593
I
tetur01g03020
Tetranychus urticae
tetur01g03020
I
hey2
Xenopus tropicalis
XB-GENE-485923
I
hey1
Xenopus tropicalis
XB-GENE-486694
I
hey1.S
Xenopus laevis
XB-GENE-865637
I
YQE_09192
Dendroctonus ponderosae
YQE_09192
I