CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjT02N03.60.nd
(
Lotus japonicus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
LjT02N03.60.nd
T052165_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK15505.1
M01125_2.00
Cannabis sativa
NRCACGTGYN
NRCACGTGYN
PBM
Lambert et al.(2019)
pTH10268
0.854
0.735
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjT02N03.60.nd
bHLH
293
341
QLHHMISERRRREKLNENFQALRALLPPGTKKDKASILITAKETLSSLL
Links
Other
bHLH
family TFs
Other
Lotus japonicus
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29912.m005337
Ricinus communis
29912.m005337
I
0.853
Al_scaffold_0008_2143
Arabidopsis lyrata
Al_scaffold_0008_2143
I
0.854
Aquca_020_00438
Aquilegia coerulea
Aquca_020_00438
I
0.854
AT5G56960
Arabidopsis thaliana
AT5G56960
I
0.854
BGIOSGA033976
Oryza indica
BGIOSGA033976
I
0.845
Bo2g032920
Brassica oleracea
Bo2g032920
I
0.866
Bostr.26833s0565
Boechera stricta
Bostr.26833s0565
I
0.854
Bra035639
Brassica rapa
Bra035639
I
0.854
Cagra.1569s0004
Capsella grandiflora
Cagra.1569s0004
I
0.854
Carubv10026331m.g
Capsella rubella
Carubv10026331m.g
I
0.854
cassava25701.m1
Manihot esculenta
cassava25701.m1
I
0.853
cassava46879.m1
Manihot esculenta
cassava46879.m1
I
0.853
Ca_20616
Cicer arietinum
Ca_20616
N
0.840
Ciclev10007937m.g
Citrus clementina
Ciclev10007937m.g
I
0.854
Cla017100
Citrullus lanatus
Cla017100
I
0.876
Cucsa.117060
Cucumis sativus
Cucsa.117060
I
0.876
Eucgr.C03476
Eucalyptus grandis
Eucgr.C03476
I
0.876
gene12658-v1.0-hybrid
Fragaria vesca
gene12658-v1.0-hybrid
I
0.876
GLYMA09G07391
Glycine max
GLYMA09G07391
I
0.869
GLYMA15G18580
Glycine max
GLYMA15G18580
I
0.869
GLYMA17G06190
Glycine max
GLYMA17G06190
N
0.840
GSMUA_Achr6G00900_001
Musa acuminata
GSMUA_Achr6G00900_001
I
0.854
LPERR05G05410
Leersia perrieri
LPERR05G05410
I
0.845
MDP0000119495
Malus domestica
MDP0000119495
I
0.853
MDP0000252899
Malus domestica
MDP0000252899
I
0.853
MDP0000782908
Malus domestica
MDP0000782908
I
0.876
mgf018190m
Mimulus guttatus
mgf018190m
I
0.842
MTR_2g039620
Medicago truncatula
MTR_2g039620
N
0.860
OB05G15870
Oryza brachyantha
OB05G15870
I
0.845
OBART05G06380
Oryza barthii
OBART05G06380
I
0.845
OGLUM05G06690
Oryza glumaepatula
OGLUM05G06690
I
0.845
ONIVA05G07120
Oryza nivara
ONIVA05G07120
I
0.845
OPUNC05G05910
Oryza punctata
OPUNC05G05910
I
0.866
orange1.1g008967m.g
Citrus sinensis
orange1.1g008967m.g
I
0.854
ORGLA05G0058200
Oryza glaberrima
ORGLA05G0058200
I
0.845
ORUFI05G06870
Oryza rufipogon
ORUFI05G06870
I
0.845
OS05G0199800
Oryza sativa
OS05G0199800
I
0.845
PGSC0003DMG400000335
Solanum tuberosum
PGSC0003DMG400000335
I
0.858
PK15505.1
Cannabis sativa
PK15505.1
D
0.854
Pm027191
Prunus mume
Pm027191
I
0.876
POPTR_0006s15310
Populus trichocarpa
POPTR_0006s15310
I
0.853
PRUPE_ppa020972mg
Prunus persica
PRUPE_ppa020972mg
I
0.876
Thhalv10013360m.g
Eutrema salsugineum
Thhalv10013360m.g
I
0.854
VIT_11s0016g02070
Vitis vinifera
VIT_11s0016g02070
I
0.854