CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra022409
(
Brassica rapa
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
Bra022409
T057472_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ABF4
M01056_2.00
Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN
PBM
Sullivan et al.(2014)
pTH7315
0.851
0.935
ABF4
M01057_2.00
Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN
PBM
Sullivan et al.(2014)
pTH7551
0.851
0.935
ABF4
M09911_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF4_Q2
0.851
0.935
PK18009.1
M01158_2.00
Cannabis sativa
NNACACGTGN
NCACGTGTNN
PBM
Lambert et al.(2019)
pTH10272
0.849
0.774
ABF1
M01772_2.00
Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN
PBM
Weirauch et al.(2014)
pTH8837
0.832
0.790
ABF1
M01773_2.00
Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN
PBM
Weirauch et al.(2014)
pTH8853
0.832
0.790
ABF1
M02656_2.00
Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV
SELEX
Mathelier et al.(2014)
MA0570.1
0.832
0.790
ABF1
M09906_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_01
0.832
0.790
ABF1
M09907_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_02
0.832
0.790
ABF1
M09908_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_03
0.832
0.790
ABF3
M01782_2.00
Arabidopsis thaliana
ACACGTGT
ACACGTGT
PBM
Weirauch et al.(2014)
pTH7240
0.818
0.613
ABF3
M09912_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF3_Q2
0.818
0.613
ABF2
M01771_2.00
Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN
PBM
Weirauch et al.(2014)
pTH8103
0.802
0.774
ABF2
M06755_2.00
Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN
Dap-seq
OMalley et al.(2016)
ABF2_col_v3a
0.802
0.774
OS08G0471950
M10047_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TRAB1_Q2
0.800
0.629
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra022409.1-P
bZIP
274
336
IERRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQRKQAEMMEMQKNELKESSK
Links
Other
bZIP
family TFs
Other
Brassica rapa
TFs
222 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo5g115300
Brassica oleracea
Bo5g115300
I
0.872
Bra037533
Brassica rapa
Bra037533
I
0.872
Thhalv10020772m.g
Eutrema salsugineum
Thhalv10020772m.g
I
0.872
Bostr.19424s0732
Boechera stricta
Bostr.19424s0732
I
0.865
ABF4
Arabidopsis lyrata
fgenesh2_kg.3__2145__AT3G19290.1
I
0.862
Cagra.4978s0002
Capsella grandiflora
Cagra.4978s0002
I
0.862
Carubv10013729m.g
Capsella rubella
Carubv10013729m.g
I
0.862
ABF1
Arabidopsis lyrata
fgenesh2_kg.1__4055__AT1G49720.1
I
0.856
Thhalv10012271m.g
Eutrema salsugineum
Thhalv10012271m.g
I
0.855
ABF4
Arabidopsis thaliana
AT3G19290
D
0.851
SapurV1A.0643s0160
Salix purpurea
SapurV1A.0643s0160
I
0.851
SapurV1A.3185s0030
Salix purpurea
SapurV1A.3185s0030
I
0.851
PGSC0003DMG400006211
Solanum tuberosum
PGSC0003DMG400006211
I
0.850
Cagra.2481s0016
Capsella grandiflora
Cagra.2481s0016
I
0.849
PK18009.1
Cannabis sativa
PK18009.1
D
0.849
Si030114m.g
Setaria italica
Si030114m.g
I
0.847
PGSC0003DMG400025889
Solanum tuberosum
PGSC0003DMG400025889
I
0.843
Solyc01g108080.2
Solanum lycopersicum
Solyc01g108080.2
I
0.843
evm.TU.supercontig_62.4
Carica papaya
evm.TU.supercontig_62.4
I
0.842
TCM_007074
Theobroma cacao
TCM_007074
I
0.839
mgf002047m
Mimulus guttatus
mgf002047m
I
0.839
mgf007524m
Mimulus guttatus
mgf007524m
I
0.839
mgf014602m
Mimulus guttatus
mgf014602m
I
0.839
Gorai.013G044500
Gossypium raimondii
Gorai.013G044500
I
0.839
MDP0000248567
Malus domestica
MDP0000248567
I
0.839
gene28250-v1.0-hybrid
Fragaria vesca
gene28250-v1.0-hybrid
I
0.838
PRUPE_ppa006752mg
Prunus persica
PRUPE_ppa006752mg
I
0.836
Pm021430
Prunus mume
Pm021430
I
0.836
Solyc10g050210.1
Solanum lycopersicum
Solyc10g050210.1
I
0.835
Lus10002399.g
Linum usitatissimum
Lus10002399.g
I
0.835
ABF1
Arabidopsis thaliana
AT1G49720
D
0.832
Cla016272
Citrullus lanatus
Cla016272
I
0.831
Cucsa.219780
Cucumis sativus
Cucsa.219780
I
0.831
Pavir.Fa00674
Panicum virgatum
Pavir.Fa00674
I
0.831
Bo3g073080
Brassica oleracea
Bo3g073080
I
0.830
PGSC0003DMG400022931
Solanum tuberosum
PGSC0003DMG400022931
I
0.830
Si013904m.g
Setaria italica
Si013904m.g
I
0.830
Solyc11g044560.1
Solanum lycopersicum
Solyc11g044560.1
I
0.830
BGIOSGA030899
Oryza indica
BGIOSGA030899
I
0.829
GSMUA_Achr3G22710_001
Musa acuminata
GSMUA_Achr3G22710_001
I
0.829
LPERR09G09170
Leersia perrieri
LPERR09G09170
I
0.829
OGLUM09G13130
Oryza glumaepatula
OGLUM09G13130
I
0.829
OMERI09G10130
Oryza meridionalis
OMERI09G10130
I
0.829
OPUNC09G11090
Oryza punctata
OPUNC09G11090
I
0.829
ORGLA09G0097200
Oryza glaberrima
ORGLA09G0097200
I
0.829
OS09G0456200
Oryza sativa
OS09G0456200
I
0.829
POPTR_0009s10400
Populus trichocarpa
POPTR_0009s10400
I
0.828
cassava42743.valid.m1
Manihot esculenta
cassava42743.valid.m1
I
0.828
cassava42744.valid.m1
Manihot esculenta
cassava42744.valid.m1
I
0.828
cassava42745.valid.m1
Manihot esculenta
cassava42745.valid.m1
I
0.828
GSMUA_Achr8G07740_001
Musa acuminata
GSMUA_Achr8G07740_001
I
0.827
TCM_033824
Theobroma cacao
TCM_033824
I
0.827
Thhalv10025203m.g
Eutrema salsugineum
Thhalv10025203m.g
I
0.826
AMTR_s00114p00031980
Amborella trichopoda
AMTR_s00114p00031980
I
0.825
Gorai.005G237400
Gossypium raimondii
Gorai.005G237400
I
0.825
Lus10014066.g
Linum usitatissimum
Lus10014066.g
I
0.824
GLYMA04G04170
Glycine max
GLYMA04G04170
I
0.823
GLYMA06G04353
Glycine max
GLYMA06G04353
I
0.823
PGSC0003DMG400008011
Solanum tuberosum
PGSC0003DMG400008011
I
0.823
Sb07g022965
Sorghum bicolor
Sb07g022965
I
0.823
ABF2
Vitis vinifera
VIT_18s0001g10450
I
0.823
Ca_01548
Cicer arietinum
Ca_01548
I
0.823
gene09110-v1.0-hybrid
Fragaria vesca
gene09110-v1.0-hybrid
I
0.822
GSMUA_Achr9G27130_001
Musa acuminata
GSMUA_Achr9G27130_001
I
0.821
MTR_3g101780
Medicago truncatula
MTR_3g101780
I
0.821
POPTR_0002s12710
Populus trichocarpa
POPTR_0002s12710
I
0.821
POPTR_0014s02810
Populus trichocarpa
POPTR_0014s02810
I
0.821
30170.m013868
Ricinus communis
30170.m013868
I
0.821
cassava12275.valid.m1
Manihot esculenta
cassava12275.valid.m1
I
0.821
cassava42669.valid.m1
Manihot esculenta
cassava42669.valid.m1
I
0.821
Eucgr.F02337
Eucalyptus grandis
Eucgr.F02337
I
0.821
SapurV1A.0167s0060
Salix purpurea
SapurV1A.0167s0060
I
0.821
SapurV1A.0878s0160
Salix purpurea
SapurV1A.0878s0160
I
0.821
Pavir.Ba02029
Panicum virgatum
Pavir.Ba02029
I
0.820
Ciclev10001159m.g
Citrus clementina
Ciclev10001159m.g
I
0.819
evm.TU.supercontig_49.26
Carica papaya
evm.TU.supercontig_49.26
I
0.819
orange1.1g021624m.g
Citrus sinensis
orange1.1g021624m.g
I
0.819
orange1.1g025340m.g
Citrus sinensis
orange1.1g025340m.g
I
0.819
AMTR_s00132p00065700
Amborella trichopoda
AMTR_s00132p00065700
I
0.818
ABF3
Arabidopsis thaliana
AT4G34000
D
0.818
ABF3
Arabidopsis lyrata
fgenesh2_kg.7__705__AT4G34000.1
I
0.818
GSMUA_Achr3G07000_001
Musa acuminata
GSMUA_Achr3G07000_001
I
0.818
TRAES3BF111600160CFD_g
Triticum aestivum
TRAES3BF111600160CFD_g
I
0.818
29801.m003176
Ricinus communis
29801.m003176
I
0.818
Bostr.7867s1253
Boechera stricta
Bostr.7867s1253
I
0.818
Cagra.1305s0026
Capsella grandiflora
Cagra.1305s0026
I
0.818
Carubv10006251m.g
Capsella rubella
Carubv10006251m.g
I
0.818
PK02169.1
Cannabis sativa
PK02169.1
I
0.818
mgf020824m
Mimulus guttatus
mgf020824m
I
0.816
F775_32479
Aegilops tauschii
F775_32479
I
0.815
MLOC_34679
Hordeum vulgare
MLOC_34679
I
0.815
Traes_3AL_FC5523394
Triticum aestivum
Traes_3AL_FC5523394
I
0.815
TRAES3BF099600130CFD_g
Triticum aestivum
TRAES3BF099600130CFD_g
I
0.815
TRAES3BF111600130CFD_g
Triticum aestivum
TRAES3BF111600130CFD_g
I
0.815
Ciclev10028435m.g
Citrus clementina
Ciclev10028435m.g
I
0.815
orange1.1g013197m.g
Citrus sinensis
orange1.1g013197m.g
I
0.815
Bo1g007700
Brassica oleracea
Bo1g007700
I
0.814
OB08G24950
Oryza brachyantha
OB08G24950
I
0.814
VIT_03s0063g00310
Vitis vinifera
VIT_03s0063g00310
I
0.814
Gorai.008G024700
Gossypium raimondii
Gorai.008G024700
I
0.814
ORGLA02G0292000
Oryza glaberrima
ORGLA02G0292000
I
0.813
Gorai.005G102300
Gossypium raimondii
Gorai.005G102300
I
0.813
Pavir.Fb01750
Panicum virgatum
Pavir.Fb01750
I
0.813
BGIOSGA004837
Oryza indica
BGIOSGA004837
I
0.812
Bo7g116570
Brassica oleracea
Bo7g116570
I
0.812
GRMZM2G168079
Zea mays
GRMZM2G168079
I
0.812
GSMUA_Achr6G30550_001
Musa acuminata
GSMUA_Achr6G30550_001
I
0.812
LPERR01G32620
Leersia perrieri
LPERR01G32620
I
0.812
OB01G46760
Oryza brachyantha
OB01G46760
I
0.812
OBART01G37980
Oryza barthii
OBART01G37980
I
0.812
OGLUM01G42150
Oryza glumaepatula
OGLUM01G42150
I
0.812
OLONG_014546
Oryza longistaminata
OLONG_014546
I
0.812
OMERI01G34950
Oryza meridionalis
OMERI01G34950
I
0.812
ONIVA04G25730
Oryza nivara
ONIVA04G25730
I
0.812
ORGLA01G0317900
Oryza glaberrima
ORGLA01G0317900
I
0.812
ORUFI01G41310
Oryza rufipogon
ORUFI01G41310
I
0.812
OS01G0859300
Oryza sativa
OS01G0859300
I
0.812
Gorai.009G275700
Gossypium raimondii
Gorai.009G275700
I
0.812
Pavir.J35078
Panicum virgatum
Pavir.J35078
I
0.812
GRMZM2G002075
Zea mays
GRMZM2G002075
I
0.811
Lus10027897.g
Linum usitatissimum
Lus10027897.g
I
0.811
MDP0000296303
Malus domestica
MDP0000296303
I
0.810
LPERR08G14740
Leersia perrieri
LPERR08G14740
I
0.809
Lus10014194.g
Linum usitatissimum
Lus10014194.g
I
0.809
Lus10022720.g
Linum usitatissimum
Lus10022720.g
I
0.809
BGIOSGA005551
Oryza indica
BGIOSGA005551
I
0.808
Bo1g114840
Brassica oleracea
Bo1g114840
I
0.808
GRMZM2G157722
Zea mays
GRMZM2G157722
I
0.808
GRMZM2G478417
Zea mays
GRMZM2G478417
I
0.808
MLOC_66546
Hordeum vulgare
MLOC_66546
I
0.808
OGLUM02G34210
Oryza glumaepatula
OGLUM02G34210
I
0.808
OMERI02G32150
Oryza meridionalis
OMERI02G32150
I
0.808
ONIVA02G33490
Oryza nivara
ONIVA02G33490
I
0.808
ORUFI02G35260
Oryza rufipogon
ORUFI02G35260
I
0.808
BZIP23
Oryza sativa
OS02G0766700
I
0.808
Solyc04g078840.2
Solanum lycopersicum
Solyc04g078840.2
I
0.808
Cla022926
Citrullus lanatus
Cla022926
I
0.808
Cucsa.396070
Cucumis sativus
Cucsa.396070
I
0.808
GSMUA_Achr5G05690_001
Musa acuminata
GSMUA_Achr5G05690_001
I
0.807
OB09G19140
Oryza brachyantha
OB09G19140
I
0.807
TRIUR3_26781
Triticum urartu
TRIUR3_26781
I
0.807
29625.m000702
Ricinus communis
29625.m000702
I
0.807
Eucgr.I01145
Eucalyptus grandis
Eucgr.I01145
I
0.807
BRADI3G38200
Brachypodium distachyon
BRADI3G38200
I
0.806
GSMUA_Achr5G24570_001
Musa acuminata
GSMUA_Achr5G24570_001
I
0.806
Si017618m.g
Setaria italica
Si017618m.g
I
0.806
OLONG_001053
Oryza longistaminata
OLONG_001053
I
0.805
TRIUR3_33995
Triticum urartu
TRIUR3_33995
I
0.805
LjT07K13.110.nd
Lotus japonicus
LjT07K13.110.nd
I
0.805
BGIOSGA028831
Oryza indica
BGIOSGA028831
I
0.803
OPUNC08G15700
Oryza punctata
OPUNC08G15700
I
0.803
ORGLA08G0211300
Oryza glaberrima
ORGLA08G0211300
I
0.803
ORUFI08G19970
Oryza rufipogon
ORUFI08G19970
I
0.803
ABF2
Arabidopsis thaliana
AT1G45249
D
0.802
Bo6g006970
Brassica oleracea
Bo6g006970
I
0.802
Bra040260
Brassica rapa
Bra040260
I
0.802
ABF2
Arabidopsis lyrata
fgenesh2_kg.1__3804__AT1G45249.1
I
0.802
TRIUR3_31111
Triticum urartu
TRIUR3_31111
I
0.802
Gorai.009G212600
Gossypium raimondii
Gorai.009G212600
I
0.802
Thhalv10011493m.g
Eutrema salsugineum
Thhalv10011493m.g
I
0.802
Sb04g034190
Sorghum bicolor
Sb04g034190
I
0.801
Pavir.J00256
Panicum virgatum
Pavir.J00256
I
0.801
OS08G0471950
Oryza sativa
OS08G0471950
D
0.800
cassava32856.m1
Manihot esculenta
cassava32856.m1
I
0.800
OGLUM08G18640
Oryza glumaepatula
OGLUM08G18640
I
0.799
PRUPE_ppa006503mg
Prunus persica
PRUPE_ppa006503mg
I
0.799
Cagra.10917s0002
Capsella grandiflora
Cagra.10917s0002
I
0.798
Carubv10009177m.g
Capsella rubella
Carubv10009177m.g
I
0.798
OPUNC01G36800
Oryza punctata
OPUNC01G36800
I
0.797
Sb06g026410
Sorghum bicolor
Sb06g026410
I
0.797
Pm001315
Prunus mume
Pm001315
I
0.797
OBART02G33770
Oryza barthii
OBART02G33770
I
0.796
Sb08g003760
Sorghum bicolor
Sb08g003760
I
0.794
Pm005288
Prunus mume
Pm005288
I
0.794
Cucsa.241090
Cucumis sativus
Cucsa.241090
I
0.793
GLYMA07G33600
Glycine max
GLYMA07G33600
I
0.792
GSMUA_Achr6G04270_001
Musa acuminata
GSMUA_Achr6G04270_001
I
0.791
TCM_034992
Theobroma cacao
TCM_034992
I
0.791
GLYMA13G22061
Glycine max
GLYMA13G22061
I
0.790
MTR_7g104480
Medicago truncatula
MTR_7g104480
I
0.790
OLONG_000475
Oryza longistaminata
OLONG_000475
I
0.790
ONIVA08G19830
Oryza nivara
ONIVA08G19830
I
0.790
cassava11518.m1
Manihot esculenta
cassava11518.m1
I
0.790
Cucsa.385090
Cucumis sativus
Cucsa.385090
I
0.790
mgf002176m
Mimulus guttatus
mgf002176m
I
0.790
GRMZM2G033413
Zea mays
GRMZM2G033413
I
0.789
MTR_4g085910
Medicago truncatula
MTR_4g085910
I
0.789
OB02G40680
Oryza brachyantha
OB02G40680
I
0.789
Si006889m.g
Setaria italica
Si006889m.g
I
0.789
Ca_00791
Cicer arietinum
Ca_00791
I
0.789
Ca_06458
Cicer arietinum
Ca_06458
I
0.789
Lus10021369.g
Linum usitatissimum
Lus10021369.g
I
0.789
Pavir.Da01931
Panicum virgatum
Pavir.Da01931
I
0.789
ABI5
Arabidopsis thaliana
AT2G36270
D
0.788
LPERR02G27610
Leersia perrieri
LPERR02G27610
I
0.788
POPTR_0009s16610
Populus trichocarpa
POPTR_0009s16610
I
0.788
cassava17300.m1
Manihot esculenta
cassava17300.m1
I
0.788
Lus10009755.g
Linum usitatissimum
Lus10009755.g
I
0.788
SapurV1A.0374s0070
Salix purpurea
SapurV1A.0374s0070
I
0.788
SELMODRAFT_443424
Selaginella moellendorffii
SELMODRAFT_443424
I
0.787
cassava16074.m1
Manihot esculenta
cassava16074.m1
I
0.787
Lus10017049.g
Linum usitatissimum
Lus10017049.g
I
0.787
MDP0000701734
Malus domestica
MDP0000701734
I
0.787
Bra018800
Brassica rapa
Bra018800
I
0.786
30055.m001548
Ricinus communis
30055.m001548
I
0.786
Bo6g018480
Brassica oleracea
Bo6g018480
I
0.785
F775_19301
Aegilops tauschii
F775_19301
I
0.785
ABI5
Populus trichocarpa
POPTR_0006s08300
I
0.785
Traes_3DL_E21790878
Triticum aestivum
Traes_3DL_E21790878
I
0.785
GRMZM2G132868
Zea mays
GRMZM2G132868
I
0.784
Solyc09g009490.2
Solanum lycopersicum
Solyc09g009490.2
I
0.784
Eucgr.G01436
Eucalyptus grandis
Eucgr.G01436
I
0.784
Pavir.J06257
Panicum virgatum
Pavir.J06257
I
0.784
Pavir.J36143
Panicum virgatum
Pavir.J36143
I
0.784
GSMUA_Achr9G08900_001
Musa acuminata
GSMUA_Achr9G08900_001
N
0.783
DPBF2
Vitis vinifera
VIT_06s0080g00340
I
0.783
Aquca_072_00142
Aquilegia coerulea
Aquca_072_00142
I
0.783
Bostr.12302s0127
Boechera stricta
Bostr.12302s0127
I
0.783
Lus10006489.g
Linum usitatissimum
Lus10006489.g
I
0.783
Bra011485
Brassica rapa
Bra011485
I
0.782
GLYMA10G08370
Glycine max
GLYMA10G08370
I
0.782
PGSC0003DMG400002660
Solanum tuberosum
PGSC0003DMG400002660
I
0.782