CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSXMAG00000013231
(
Xiphophorus maculatus
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
ENSXMAG00000013231
T061835_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATF6B
M04375_2.00
Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN
SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_1
0.812
0.578
ATF6B
M04376_2.00
Homo sapiens
NRTGACGTGGCR
YGCCACGTCAYN
SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_2
0.812
0.578
ATF6B
M04377_2.00
Homo sapiens
TGCCACGTGGCR
YGCCACGTGGCA
SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_3
0.812
0.578
ATF6B
M04041_2.00
Homo sapiens
GRTGACGTGGCR
YGCCACGTCAYC
SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.1
0.812
0.578
ATF6B
M04042_2.00
Homo sapiens
YGMCACGTGKCR
YGMCACGTGKCR
SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.2
0.812
0.578
ATF6B
M04043_2.00
Homo sapiens
RTGACGTCAYC
GRTGACGTCAY
SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.3
0.812
0.578
ATF6B
M04044_2.00
Homo sapiens
MCCACGATGT
ACATCGTGGK
SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.4
0.812
0.578
ATF6B
M04378_2.00
Homo sapiens
SRTGACGTCAYB
VRTGACGTCAYS
SELEX
Yin et al.(2017)
ATF6B_eDBD_Methyl-HT-SELEX_1
0.812
0.578
ATF6B
M04379_2.00
Homo sapiens
BRTGACGTGGCR
YGCCACGTCAYV
SELEX
Yin et al.(2017)
ATF6B_eDBD_Methyl-HT-SELEX_2
0.812
0.578
ATF6
M04254_2.00
Homo sapiens
YKRTGACGTGGCAN
NTGCCACGTCAYMR
SELEX
Yin et al.(2017)
ATF6_eDBD_HT-SELEX_1
0.794
0.656
ATF6
M04255_2.00
Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN
SELEX
Yin et al.(2017)
ATF6_eDBD_HT-SELEX_2
0.794
0.656
ATF6
M04018_2.00
Homo sapiens
GRTGACGTGGCR
YGCCACGTCAYC
SELEX
Rodriguez-Martinez et al.(2017)
ATF6.1
0.794
0.656
ATF6
M04019_2.00
Homo sapiens
KAGTCACGTGK
MCACGTGACTM
SELEX
Rodriguez-Martinez et al.(2017)
ATF6.2
0.794
0.656
ATF6
M04020_2.00
Homo sapiens
BNRTGACGTCATCA
TGATGACGTCAYNV
SELEX
Rodriguez-Martinez et al.(2017)
ATF6.3
0.794
0.656
ATF6
M04021_2.00
Homo sapiens
ACCACGATGTY
RACATCGTGGT
SELEX
Rodriguez-Martinez et al.(2017)
ATF6.4
0.794
0.656
ATF6
M08790_2.00
Homo sapiens
VBSSTGACGTGG
CCACGTCASSVB
Misc
Kulakovskiy et al.(2013)
ATF6A_HUMAN.H11MO.0.B
0.794
0.656
ATF6
M09947_2.00
Homo sapiens
TGACGTGG
CCACGTCA
Transfac
Matys et al.(2006)
V$ATF6_01
0.794
0.656
ATF6
M04256_2.00
Homo sapiens
YGRTGACGTGGCRN
NYGCCACGTCAYCR
SELEX
Yin et al.(2017)
ATF6_eDBD_Methyl-HT-SELEX_1
0.794
0.656
ATF6
M04257_2.00
Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN
SELEX
Yin et al.(2017)
ATF6_eDBD_Methyl-HT-SELEX_2
0.794
0.656
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXMAP00000013263
bZIP
286
349
SRLSQKQQRMIKNRESASLSRKKKKEYLLSLEARLKVALSENEALKSENGNLKKQLEGLLGQNS
Links
Other
bZIP
family TFs
Other
Xiphophorus maculatus
TFs
101 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00017p00086440
Amborella trichopoda
AMTR_s00017p00086440
I
Aquca_017_00778
Aquilegia coerulea
Aquca_017_00778
I
Bo8g027000
Brassica oleracea
Bo8g027000
I
Bostr.1040s0032
Boechera stricta
Bostr.1040s0032
I
Cagra.12398s0002
Capsella grandiflora
Cagra.12398s0002
I
Carubv10008876m.g
Capsella rubella
Carubv10008876m.g
I
cassava22193.valid.m1
Manihot esculenta
cassava22193.valid.m1
I
cassava24483.valid.m1
Manihot esculenta
cassava24483.valid.m1
I
Ca_04300
Cicer arietinum
Ca_04300
I
Cla016623
Citrullus lanatus
Cla016623
I
Cucsa.079940
Cucumis sativus
Cucsa.079940
I
gene27486-v1.0-hybrid
Fragaria vesca
gene27486-v1.0-hybrid
I
GLYMA10G35940
Glycine max
GLYMA10G35940
I
GLYMA16G27280
Glycine max
GLYMA16G27280
I
GLYMA20G31650
Glycine max
GLYMA20G31650
I
GRMZM2G470422
Zea mays
GRMZM2G470422
N
GSMUA_Achr5G01170_001
Musa acuminata
GSMUA_Achr5G01170_001
I
LPERR03G34390
Leersia perrieri
LPERR03G34390
I
MDP0000141403
Malus domestica
MDP0000141403
I
MDP0000199559
Malus domestica
MDP0000199559
I
MDP0000551046
Malus domestica
MDP0000551046
I
MDP0000807856
Malus domestica
MDP0000807856
I
mgf000060m
Mimulus guttatus
mgf000060m
I
OB03G47410
Oryza brachyantha
OB03G47410
I
Pavir.Ia00191
Panicum virgatum
Pavir.Ia00191
I
Pavir.J01834
Panicum virgatum
Pavir.J01834
I
Pavir.J06328
Panicum virgatum
Pavir.J06328
I
Pavir.J12018
Panicum virgatum
Pavir.J12018
I
PDK_20s1338731g001
Phoenix dactylifera
PDK_20s1338731g001
I
PK23301.1
Cannabis sativa
PK23301.1
I
Pm022201
Prunus mume
Pm022201
I
POPTR_0019s11520
Populus trichocarpa
POPTR_0019s11520
I
PRUPE_ppa004510mg
Prunus persica
PRUPE_ppa004510mg
I
SapurV1A.0287s0150
Salix purpurea
SapurV1A.0287s0150
I
SapurV1A.2334s0030
Salix purpurea
SapurV1A.2334s0030
I
SELMODRAFT_48272
Selaginella moellendorffii
SELMODRAFT_48272
I
SELMODRAFT_58350
Selaginella moellendorffii
SELMODRAFT_58350
I
Si036555m.g
Setaria italica
Si036555m.g
I
STOP1
Vitis vinifera
VIT_18s0072g00840
I
STOP1
Arabidopsis lyrata
fgenesh2_kg.1__3547__AT1G34370.2
I
STOP1
Arabidopsis thaliana
AT1G34370
D
Thhalv10007411m.g
Eutrema salsugineum
Thhalv10007411m.g
I