CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava42744.valid.m1
(
Manihot esculenta
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00170 (bZIP_1)
IPR011616
cassava42744.valid.m1
T070625_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK18009.1
M01158_2.00
Cannabis sativa
NNACACGTGN
NCACGTGTNN
PBM
Lambert et al.(2019)
pTH10272
0.829
0.850
ABF4
M01056_2.00
Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN
PBM
Sullivan et al.(2014)
pTH7315
0.823
0.783
ABF4
M01057_2.00
Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN
PBM
Sullivan et al.(2014)
pTH7551
0.823
0.783
ABF4
M09911_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF4_Q2
0.823
0.783
ABF3
M01782_2.00
Arabidopsis thaliana
ACACGTGT
ACACGTGT
PBM
Weirauch et al.(2014)
pTH7240
0.816
0.617
ABF3
M09912_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF3_Q2
0.816
0.617
ABF1
M01772_2.00
Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN
PBM
Weirauch et al.(2014)
pTH8837
0.811
0.667
ABF1
M01773_2.00
Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN
PBM
Weirauch et al.(2014)
pTH8853
0.811
0.667
ABF1
M02656_2.00
Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV
SELEX
Mathelier et al.(2014)
MA0570.1
0.811
0.667
ABF1
M09906_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_01
0.811
0.667
ABF1
M09907_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_02
0.811
0.667
ABF1
M09908_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ABF1_03
0.811
0.667
ABF2
M01771_2.00
Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN
PBM
Weirauch et al.(2014)
pTH8103
0.801
0.817
ABF2
M06755_2.00
Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN
Dap-seq
OMalley et al.(2016)
ABF2_col_v3a
0.801
0.817
OS08G0471950
M10047_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TRAB1_Q2
0.799
0.667
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava42744.valid.m1
bZIP
362
421
IERRHRRMIKNRESAARSRARKQAYTLELEAEVAKLKELNQELRSKQDEIMEMQKNQFLE
Links
Other
bZIP
family TFs
Other
Manihot esculenta
TFs
205 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SGR5
Arabidopsis thaliana
AT2G01940
D
AMTR_s00024p00098860
Amborella trichopoda
AMTR_s00024p00098860
I
AtIDD16
Arabidopsis thaliana
AT1G25250
I
IDD14
Arabidopsis thaliana
AT1G68130
I
BGIOSGA011151
Oryza indica
BGIOSGA011151
I
BGIOSGA030871
Oryza indica
BGIOSGA030871
I
Bo2g134790
Brassica oleracea
Bo2g134790
I
Bo3g139880
Brassica oleracea
Bo3g139880
I
Bo5g043540
Brassica oleracea
Bo5g043540
I
Bo6g097320
Brassica oleracea
Bo6g097320
I
Bo6g106560
Brassica oleracea
Bo6g106560
I
Bo9g070370
Brassica oleracea
Bo9g070370
I
Bra004050
Brassica rapa
Bra004050
I
Bra004283
Brassica rapa
Bra004283
I
Bra010981
Brassica rapa
Bra010981
I
Bra017432
Brassica rapa
Bra017432
I
Bra024771
Brassica rapa
Bra024771
I
Bra024841
Brassica rapa
Bra024841
I
Bra026624
Brassica rapa
Bra026624
I
BRADI1G68730
Brachypodium distachyon
BRADI1G68730
I
BRADI3G37890
Brachypodium distachyon
BRADI3G37890
I
BRADI4G31770
Brachypodium distachyon
BRADI4G31770
I
F775_43255
Aegilops tauschii
F775_43255
I
AtIDD14
Arabidopsis lyrata
fgenesh2_kg.2__1036__AT1G68130.1
I
SGR5
Arabidopsis lyrata
fgenesh2_kg.5__108__AT2G01940.1
I
GLYMA05G26780
Glycine max
GLYMA05G26780
I
GLYMA05G33590
Glycine max
GLYMA05G33590
I
GLYMA07G12170
Glycine max
GLYMA07G12170
I
GLYMA08G09760
Glycine max
GLYMA08G09760
I
GLYMA09G30030
Glycine max
GLYMA09G30030
I
GRMZM2G074032
Zea mays
GRMZM2G074032
I
GRMZM2G110107
Zea mays
GRMZM2G110107
I
GRMZM2G123094
Zea mays
GRMZM2G123094
I
GRMZM2G141031
Zea mays
GRMZM2G141031
I
GRMZM2G465595
Zea mays
GRMZM2G465595
I
GSMUA_Achr10G29940_001
Musa acuminata
GSMUA_Achr10G29940_001
I
GSMUA_Achr5G23130_001
Musa acuminata
GSMUA_Achr5G23130_001
I
GSMUA_Achr6G02490_001
Musa acuminata
GSMUA_Achr6G02490_001
I
GSMUA_Achr7G18610_001
Musa acuminata
GSMUA_Achr7G18610_001
I
LPERR03G08760
Leersia perrieri
LPERR03G08760
I
LPERR08G14510
Leersia perrieri
LPERR08G14510
I
LPERR09G08790
Leersia perrieri
LPERR09G08790
I
MLOC_57613
Hordeum vulgare
MLOC_57613
I
OB09G18760
Oryza brachyantha
OB09G18760
I
OBART08G17550
Oryza barthii
OBART08G17550
I
OBART09G12250
Oryza barthii
OBART09G12250
I
OGLUM03G09920
Oryza glumaepatula
OGLUM03G09920
I
OGLUM08G18370
Oryza glumaepatula
OGLUM08G18370
I
OGLUM09G12720
Oryza glumaepatula
OGLUM09G12720
I
OMERI03G09110
Oryza meridionalis
OMERI03G09110
I
OMERI08G14120
Oryza meridionalis
OMERI08G14120
I
OMERI09G13410
Oryza meridionalis
OMERI09G13410
I
ONIVA03G10380
Oryza nivara
ONIVA03G10380
I
ONIVA08G19430
Oryza nivara
ONIVA08G19430
I
ONIVA09G13010
Oryza nivara
ONIVA09G13010
I
OPUNC03G09440
Oryza punctata
OPUNC03G09440
I
OPUNC08G15410
Oryza punctata
OPUNC08G15410
I
OPUNC09G10740
Oryza punctata
OPUNC09G10740
I
ORGLA03G0094200
Oryza glaberrima
ORGLA03G0094200
I
ORGLA08G0153600
Oryza glaberrima
ORGLA08G0153600
I
ORGLA09G0092400
Oryza glaberrima
ORGLA09G0092400
I
ORGLA09G0169200
Oryza glaberrima
ORGLA09G0169200
I
ORUFI03G10000
Oryza rufipogon
ORUFI03G10000
I
ORUFI09G13180
Oryza rufipogon
ORUFI09G13180
I
OS03G0237250
Oryza sativa
OS03G0237250
I
OS08G0467100
Oryza sativa
OS08G0467100
I
PGSC0003DMG400026959
Solanum tuberosum
PGSC0003DMG400026959
I
PGSC0003DMG400031049
Solanum tuberosum
PGSC0003DMG400031049
I
POPTR_0008s13980
Populus trichocarpa
POPTR_0008s13980
I
POPTR_0010s11160
Populus trichocarpa
POPTR_0010s11160
I
POPTR_0012s03730
Populus trichocarpa
POPTR_0012s03730
I
POPTR_0015s05180
Populus trichocarpa
POPTR_0015s05180
I
PRUPE_ppa004447mg
Prunus persica
PRUPE_ppa004447mg
I
PRUPE_ppa005331mg
Prunus persica
PRUPE_ppa005331mg
I
Sb02g026230
Sorghum bicolor
Sb02g026230
I
Sb07g022700
Sorghum bicolor
Sb07g022700
I
Si029726m.g
Setaria italica
Si029726m.g
I
Solyc01g005060.2
Solanum lycopersicum
Solyc01g005060.2
I
Solyc06g072360.2
Solanum lycopersicum
Solyc06g072360.2
I
TCM_011210
Theobroma cacao
TCM_011210
I
TCM_039880
Theobroma cacao
TCM_039880
I
Traes_4AS_2718699A7
Triticum aestivum
Traes_4AS_2718699A7
I
VIT_01s0011g06400
Vitis vinifera
VIT_01s0011g06400
I
VIT_17s0000g01870
Vitis vinifera
VIT_17s0000g01870
I
Ca_05083
Cicer arietinum
Ca_05083
I
Ca_22171
Cicer arietinum
Ca_22171
I
Cla005913
Citrullus lanatus
Cla005913
I
Cla018945
Citrullus lanatus
Cla018945
I
Pm005926
Prunus mume
Pm005926
I
Pm025274
Prunus mume
Pm025274
I
28952.m000016
Ricinus communis
28952.m000016
I
cassava18079.valid.m1
Manihot esculenta
cassava18079.valid.m1
I
cassava1947.valid.m1
Manihot esculenta
cassava1947.valid.m1
I
cassava36596.valid.m1
Manihot esculenta
cassava36596.valid.m1
I
Cucsa.112090
Cucumis sativus
Cucsa.112090
I
Cucsa.122150
Cucumis sativus
Cucsa.122150
I
mgf008235m
Mimulus guttatus
mgf008235m
I
Aquca_002_01252
Aquilegia coerulea
Aquca_002_01252
I
Bostr.0556s0022
Boechera stricta
Bostr.0556s0022
I
Bostr.15697s0010
Boechera stricta
Bostr.15697s0010
I
Bostr.26959s0085
Boechera stricta
Bostr.26959s0085
I
Cagra.1111s0006
Capsella grandiflora
Cagra.1111s0006
I
Cagra.2231s0014
Capsella grandiflora
Cagra.2231s0014
I
Cagra.3834s0006
Capsella grandiflora
Cagra.3834s0006
I
Carubv10009424m.g
Capsella rubella
Carubv10009424m.g
I
Carubv10017254m.g
Capsella rubella
Carubv10017254m.g
I
Carubv10020337m.g
Capsella rubella
Carubv10020337m.g
I
Ciclev10015315m.g
Citrus clementina
Ciclev10015315m.g
I
Ciclev10020125m.g
Citrus clementina
Ciclev10020125m.g
I
Eucgr.G02066
Eucalyptus grandis
Eucgr.G02066
I
Eucgr.H00574
Eucalyptus grandis
Eucgr.H00574
I
Eucgr.K02292
Eucalyptus grandis
Eucgr.K02292
I
evm.TU.supercontig_2.118
Carica papaya
evm.TU.supercontig_2.118
I
evm.TU.supercontig_7.131
Carica papaya
evm.TU.supercontig_7.131
I
gene00618-v1.0-hybrid
Fragaria vesca
gene00618-v1.0-hybrid
I
gene09325-v1.0-hybrid
Fragaria vesca
gene09325-v1.0-hybrid
I
Gorai.002G171100
Gossypium raimondii
Gorai.002G171100
I
Gorai.005G134600
Gossypium raimondii
Gorai.005G134600
I
Gorai.005G154300
Gossypium raimondii
Gorai.005G154300
I
Gorai.006G190500
Gossypium raimondii
Gorai.006G190500
I
Gorai.007G002600
Gossypium raimondii
Gorai.007G002600
I
Gorai.008G169500
Gossypium raimondii
Gorai.008G169500
I
Gorai.008G293000
Gossypium raimondii
Gorai.008G293000
I
Gorai.009G329200
Gossypium raimondii
Gorai.009G329200
I
Lus10026369.g
Linum usitatissimum
Lus10026369.g
I
Lus10031314.g
Linum usitatissimum
Lus10031314.g
I
Lus10031882.g
Linum usitatissimum
Lus10031882.g
I
orange1.1g014184m.g
Citrus sinensis
orange1.1g014184m.g
I
orange1.1g037502m.g
Citrus sinensis
orange1.1g037502m.g
I
Pavir.Ba02057
Panicum virgatum
Pavir.Ba02057
I
Pavir.Fa00691
Panicum virgatum
Pavir.Fa00691
I
Pavir.Fb01741
Panicum virgatum
Pavir.Fb01741
I
Pavir.J12350
Panicum virgatum
Pavir.J12350
I
Pavir.J40191
Panicum virgatum
Pavir.J40191
I
SapurV1A.0015s0850
Salix purpurea
SapurV1A.0015s0850
I
SapurV1A.0055s0020
Salix purpurea
SapurV1A.0055s0020
I
SapurV1A.0074s0350
Salix purpurea
SapurV1A.0074s0350
I
SapurV1A.1169s0070
Salix purpurea
SapurV1A.1169s0070
I
Thhalv10004221m.g
Eutrema salsugineum
Thhalv10004221m.g
I
Thhalv10009376m.g
Eutrema salsugineum
Thhalv10009376m.g
I
Thhalv10018614m.g
Eutrema salsugineum
Thhalv10018614m.g
I
PK17145.1
Cannabis sativa
PK17145.1
I
PK25720.1
Cannabis sativa
PK25720.1
I
chr4.CM0387.280.nc
Lotus japonicus
chr4.CM0387.280.nc
I