CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10009720m.g
(
Citrus clementina
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00170 (bZIP_1)
IPR011616
Ciclev10009720m.g
T071630_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HY5
M06790_2.00
Arabidopsis thaliana
DNHGVTGACGTSDMN
NKHSACGTCABCDNH
Dap-seq
OMalley et al.(2016)
HY5_colamp_v3a
0.857
0.922
HY5
M08407_2.00
Arabidopsis thaliana
NNHGMCACGTGKCDNN
NNHGMCACGTGKCDNN
ChIP-chip
Mathelier et al.(2014)
MA0551.1
0.857
0.922
HY5
M09919_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HY5_01
0.857
0.922
Q39895_SOYBN
M10048_2.00
Glycine max
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$STF1_01
0.857
0.906
Q39895_SOYBN
M10049_2.00
Glycine max
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$STF1_02
0.857
0.906
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10009720m
bZIP
85
148
DKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK
Links
Other
bZIP
family TFs
Other
Citrus clementina
TFs
103 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
HY5
Arabidopsis thaliana
AT5G11260
D
0.857
BGIOSGA006916
Oryza indica
BGIOSGA006916
I
0.857
BRADI3G07540
Brachypodium distachyon
BRADI3G07540
I
0.857
GLYMA08G41450
Glycine max
GLYMA08G41450
I
0.857
GLYMA18G14750
Glycine max
GLYMA18G14750
I
0.857
GSMUA_Achr10G27050_001
Musa acuminata
GSMUA_Achr10G27050_001
I
0.857
GSMUA_Achr5G06060_001
Musa acuminata
GSMUA_Achr5G06060_001
I
0.857
MTR_3g436010
Medicago truncatula
MTR_3g436010
I
0.857
OB02G17160
Oryza brachyantha
OB02G17160
I
0.857
OGLUM02G07920
Oryza glumaepatula
OGLUM02G07920
I
0.857
ONIVA02G09400
Oryza nivara
ONIVA02G09400
I
0.857
OPUNC02G07060
Oryza punctata
OPUNC02G07060
I
0.857
ORGLA02G0074000
Oryza glaberrima
ORGLA02G0074000
I
0.857
OS02G0203000
Oryza sativa
OS02G0203000
I
0.857
PGSC0003DMG401020784
Solanum tuberosum
PGSC0003DMG401020784
I
0.857
POPTR_0006s26800
Populus trichocarpa
POPTR_0006s26800
I
0.857
POPTR_0018s01530
Populus trichocarpa
POPTR_0018s01530
I
0.857
PRUPE_ppa012064mg
Prunus persica
PRUPE_ppa012064mg
I
0.857
Q39895_SOYBN
Glycine max
Q39895_SOYBN
D
0.857
HY5
Arabidopsis lyrata
scaffold_601144.1
I
0.857
Solyc08g061130.2
Solanum lycopersicum
Solyc08g061130.2
I
0.857
Traes_6BS_993CBD840
Triticum aestivum
Traes_6BS_993CBD840
I
0.857
HY5
Vitis vinifera
VIT_04s0008g05210
I
0.857
Ca_21380
Cicer arietinum
Ca_21380
I
0.857
Cla022656
Citrullus lanatus
Cla022656
I
0.857
29848.m004650
Ricinus communis
29848.m004650
I
0.857
cassava8163.valid.m1
Manihot esculenta
cassava8163.valid.m1
I
0.857
Cucsa.162360
Cucumis sativus
Cucsa.162360
I
0.857
Aquca_001_00822
Aquilegia coerulea
Aquca_001_00822
I
0.857
Bostr.23997s0021
Boechera stricta
Bostr.23997s0021
I
0.857
Cagra.7526s0027
Capsella grandiflora
Cagra.7526s0027
I
0.857
Eucgr.C02802
Eucalyptus grandis
Eucgr.C02802
I
0.857
evm.TU.supercontig_115.9
Carica papaya
evm.TU.supercontig_115.9
I
0.857
gene11666-v1.0-hybrid
Fragaria vesca
gene11666-v1.0-hybrid
I
0.857
Lus10002900.g
Linum usitatissimum
Lus10002900.g
I
0.857
MDP0000264514
Malus domestica
MDP0000264514
I
0.857
MDP0000586302
Malus domestica
MDP0000586302
I
0.857
orange1.1g030957m.g
Citrus sinensis
orange1.1g030957m.g
I
0.857
Thhalv10004860m.g
Eutrema salsugineum
Thhalv10004860m.g
I
0.857
Thhalv10014851m.g
Eutrema salsugineum
Thhalv10014851m.g
I
0.857
PK17235.1
Cannabis sativa
PK17235.1
I
0.857
GSMUA_Achr7G09980_001
Musa acuminata
GSMUA_Achr7G09980_001
I
0.854
SapurV1A.0073s0400
Salix purpurea
SapurV1A.0073s0400
I
0.854
Bo2g010330
Brassica oleracea
Bo2g010330
I
0.850
Bo9g171430
Brassica oleracea
Bo9g171430
I
0.850
Bra008976
Brassica rapa
Bra008976
I
0.850
Bra023317
Brassica rapa
Bra023317
I
0.850
mgf014305m
Mimulus guttatus
mgf014305m
I
0.850
GRMZM2G137046
Zea mays
GRMZM2G137046
I
0.848
Sb04g007060
Sorghum bicolor
Sb04g007060
I
0.848
Si018524m.g
Setaria italica
Si018524m.g
I
0.848
Pavir.Aa02966
Panicum virgatum
Pavir.Aa02966
I
0.848
TCM_038392
Theobroma cacao
TCM_038392
I
0.845
mgf012104m
Mimulus guttatus
mgf012104m
I
0.845
Gorai.004G274100
Gossypium raimondii
Gorai.004G274100
I
0.845
chr6.LjT14A08.90.nd
Lotus japonicus
chr6.LjT14A08.90.nd
I
0.845
LjB12O06.40.nc
Lotus japonicus
LjB12O06.40.nc
I
0.845
GRMZM2G140355
Zea mays
GRMZM2G140355
I
0.839
Sb10g023420
Sorghum bicolor
Sb10g023420
I
0.839
Cucsa.310450
Cucumis sativus
Cucsa.310450
I
0.839
Pavir.Da00549
Panicum virgatum
Pavir.Da00549
I
0.839
Pavir.Db01231
Panicum virgatum
Pavir.Db01231
I
0.839
SapurV1A.0043s0530
Salix purpurea
SapurV1A.0043s0530
I
0.839
GSMUA_Achr9G28570_001
Musa acuminata
GSMUA_Achr9G28570_001
I
0.838
Lus10002028.g
Linum usitatissimum
Lus10002028.g
I
0.835
SELMODRAFT_173274
Selaginella moellendorffii
SELMODRAFT_173274
I
0.833
SELMODRAFT_440988
Selaginella moellendorffii
SELMODRAFT_440988
I
0.833
SELMODRAFT_451326
Selaginella moellendorffii
SELMODRAFT_451326
I
0.833
SELMODRAFT_451330
Selaginella moellendorffii
SELMODRAFT_451330
I
0.833
Carubv10003520m.g
Capsella rubella
Carubv10003520m.g
I
0.830
EuGene.0200010492
Micromonas sp RCC299
EuGene.0200010492
I
0.829
BRADI1G36750
Brachypodium distachyon
BRADI1G36750
I
0.828
BGIOSGA023213
Oryza indica
BGIOSGA023213
I
0.824
OBART06G20230
Oryza barthii
OBART06G20230
I
0.824
OGLUM06G21280
Oryza glumaepatula
OGLUM06G21280
I
0.824
OMERI06G20830
Oryza meridionalis
OMERI06G20830
I
0.824
OPUNC06G18440
Oryza punctata
OPUNC06G18440
I
0.824
OBART02G07840
Oryza barthii
OBART02G07840
I
0.823
ORUFI03G26360
Oryza rufipogon
ORUFI03G26360
I
0.823
e_gw1.80.85.1
Physcomitrella patens
e_gw1.80.85.1
I
0.820
SapurV1A.3812s0010
Salix purpurea
SapurV1A.3812s0010
I
0.820
SAR_estExt_Genewise1Plus.C_20674
Micromonas pusilla
SAR_estExt_Genewise1Plus.C_20674
I
0.819
Traes_7DL_68B814464
Triticum aestivum
Traes_7DL_68B814464
I
0.818
Bostr.29827s0269
Boechera stricta
Bostr.29827s0269
I
0.818
F775_05429
Aegilops tauschii
F775_05429
I
0.811
GSMUA_Achr6G05280_001
Musa acuminata
GSMUA_Achr6G05280_001
I
0.811
LPERR02G06800
Leersia perrieri
LPERR02G06800
I
0.811
LPERR06G16860
Leersia perrieri
LPERR06G16860
I
0.811
OLONG_023968
Oryza longistaminata
OLONG_023968
I
0.811
Traes_6AS_AFF47E71C
Triticum aestivum
Traes_6AS_AFF47E71C
I
0.811
Cla021273
Citrullus lanatus
Cla021273
I
0.808
BGIOSGA002286
Oryza indica
BGIOSGA002286
I
0.796
Traes_6DS_F8DFD036F
Triticum aestivum
Traes_6DS_F8DFD036F
I
0.796
TRIUR3_25965
Triticum urartu
TRIUR3_25965
I
0.796
Ca_22618
Cicer arietinum
Ca_22618
I
0.795
MTR_7g057160
Medicago truncatula
MTR_7g057160
I
0.791
Eucgr.B02198
Eucalyptus grandis
Eucgr.B02198
I
0.790
Pavir.Ab00856
Panicum virgatum
Pavir.Ab00856
I
0.789
OBART06G20240
Oryza barthii
OBART06G20240
I
0.788
OLONG_013539
Oryza longistaminata
OLONG_013539
I
0.788
OS06G0601500
Oryza sativa
OS06G0601500
I
0.788
PRUPE_ppa011967mg
Prunus persica
PRUPE_ppa011967mg
I
0.787
Pm007163
Prunus mume
Pm007163
I
0.787