CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.002G042500
(
Gossypium raimondii
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00170 (bZIP_1)
IPR011616
Gorai.002G042500
T071883_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK09021.1
M01155_2.00
Cannabis sativa
NNTGACGTMA
TKACGTCANN
PBM
Lambert et al.(2019)
pTH10175
0.785
0.875
TGA6
M01780_2.00
Arabidopsis thaliana
NNTGACGTMA
TKACGTCANN
PBM
Weirauch et al.(2014)
pTH8691
0.785
0.854
TGA6
M01055_2.00
Arabidopsis thaliana
NNVTGACGTMN
NKACGTCABNN
PBM
Sullivan et al.(2014)
pTH8858
0.785
0.854
TGA2
M01784_2.00
Arabidopsis thaliana
NNACGTCABN
NVTGACGTNN
PBM
Weirauch et al.(2014)
pTH8820
0.785
0.854
TGA2
M00856_2.00
Arabidopsis thaliana
NVTGACGTMN
NKACGTCABN
PBM
Franco-Zorrilla et al.(2014)
TGA2
0.785
0.854
TGA5
M01785_2.00
Arabidopsis thaliana
VTGACGTN
NACGTCAB
PBM
Weirauch et al.(2014)
pTH8180
0.785
0.854
TGA2
M06785_2.00
Arabidopsis thaliana
YNMCGYCABCD
HGVTGRCGKNR
Dap-seq
OMalley et al.(2016)
TGA2_colamp_v31
0.785
0.854
TGA2
M06786_2.00
Arabidopsis thaliana
NNNNNDNHGMTGACGTCAYH
DRTGACGTCAKCDNHNNNNN
Dap-seq
OMalley et al.(2016)
TGA2_col
0.785
0.854
TGA5
M06787_2.00
Arabidopsis thaliana
DRTGACGTCAKCDN
NHGMTGACGTCAYH
Dap-seq
OMalley et al.(2016)
TGA5_col_v3a
0.785
0.854
TGA6
M06773_2.00
Arabidopsis thaliana
DRTGACGTCAKCDNN
NNHGMTGACGTCAYH
Dap-seq
OMalley et al.(2016)
TGA6_col_a
0.785
0.854
TGA6
M06774_2.00
Arabidopsis thaliana
NRTGACGTCAKCDNN
NNHGMTGACGTCAYN
Dap-seq
OMalley et al.(2016)
TGA6_colamp_a
0.785
0.854
TGA2
M09917_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TGA2_01
0.785
0.854
TGA2
M09918_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TGA2_Q2
0.785
0.854
HBP1B_WHEAT
M10043_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HBP1B_Q6
0.785
0.833
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.002G042500.1
bZIP
144
191
SNDQKTLRRLAQNREAARNSRLRKKTYVQQLESSRLRLTELEQELQRA
Links
Other
bZIP
family TFs
Other
Gossypium raimondii
TFs
133 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29216.m000249
Ricinus communis
29216.m000249
I
0.785
30131.m007163
Ricinus communis
30131.m007163
I
0.785
Aquca_004_00791
Aquilegia coerulea
Aquca_004_00791
I
0.785
Aquca_009_00172
Aquilegia coerulea
Aquca_009_00172
I
0.785
Aquca_009_00424
Aquilegia coerulea
Aquca_009_00424
I
0.785
TGA6
Arabidopsis thaliana
AT3G12250
D
0.785
TGA2
Arabidopsis thaliana
AT5G06950
D
0.785
TGA5
Arabidopsis thaliana
AT5G06960
D
0.785
BGIOSGA003265
Oryza indica
BGIOSGA003265
I
0.785
Bo1g139470
Brassica oleracea
Bo1g139470
I
0.785
Bo2g007460
Brassica oleracea
Bo2g007460
I
0.785
Bo3g064830
Brassica oleracea
Bo3g064830
I
0.785
Bo5g133550
Brassica oleracea
Bo5g133550
I
0.785
Bo9g175710
Brassica oleracea
Bo9g175710
I
0.785
Bostr.13129s0278
Boechera stricta
Bostr.13129s0278
I
0.785
Bostr.13129s0279
Boechera stricta
Bostr.13129s0279
I
0.785
Bostr.3640s0002
Boechera stricta
Bostr.3640s0002
I
0.785
Bra001443
Brassica rapa
Bra001443
I
0.785
Bra009241
Brassica rapa
Bra009241
I
0.785
Bra028713
Brassica rapa
Bra028713
I
0.785
Bra034767
Brassica rapa
Bra034767
I
0.785
Bra038705
Brassica rapa
Bra038705
I
0.785
BRADI2G10830
Brachypodium distachyon
BRADI2G10830
I
0.785
Cagra.0430s0055
Capsella grandiflora
Cagra.0430s0055
I
0.785
Cagra.16209s0003
Capsella grandiflora
Cagra.16209s0003
I
0.785
Cagra.16209s0004
Capsella grandiflora
Cagra.16209s0004
I
0.785
Carubv10001409m.g
Capsella rubella
Carubv10001409m.g
I
0.785
Carubv10001413m.g
Capsella rubella
Carubv10001413m.g
I
0.785
cassava1426.valid.m1
Manihot esculenta
cassava1426.valid.m1
I
0.785
cassava1427.valid.m1
Manihot esculenta
cassava1427.valid.m1
I
0.785
cassava22236.valid.m1
Manihot esculenta
cassava22236.valid.m1
I
0.785
cassava22237.valid.m1
Manihot esculenta
cassava22237.valid.m1
I
0.785
cassava6928.valid.m1
Manihot esculenta
cassava6928.valid.m1
I
0.785
Ca_07170
Cicer arietinum
Ca_07170
I
0.785
Ca_10901
Cicer arietinum
Ca_10901
I
0.785
Ca_17971
Cicer arietinum
Ca_17971
I
0.785
chr1.CM0009.80.nd
Lotus japonicus
chr1.CM0009.80.nd
I
0.785
Ciclev10001081m.g
Citrus clementina
Ciclev10001081m.g
I
0.785
Ciclev10005080m.g
Citrus clementina
Ciclev10005080m.g
I
0.785
Ciclev10031361m.g
Citrus clementina
Ciclev10031361m.g
I
0.785
Cla002918
Citrullus lanatus
Cla002918
I
0.785
Cla010092
Citrullus lanatus
Cla010092
I
0.785
Cla017796
Citrullus lanatus
Cla017796
I
0.785
Cla022393
Citrullus lanatus
Cla022393
I
0.785
Cucsa.005120
Cucumis sativus
Cucsa.005120
I
0.785
Cucsa.242870
Cucumis sativus
Cucsa.242870
I
0.785
Cucsa.307820
Cucumis sativus
Cucsa.307820
I
0.785
Cucsa.337740
Cucumis sativus
Cucsa.337740
I
0.785
Eucgr.A02240
Eucalyptus grandis
Eucgr.A02240
I
0.785
Eucgr.G03217
Eucalyptus grandis
Eucgr.G03217
I
0.785
Eucgr.K01643
Eucalyptus grandis
Eucgr.K01643
I
0.785
evm.TU.supercontig_1.202
Carica papaya
evm.TU.supercontig_1.202
I
0.785
evm.TU.supercontig_5.165
Carica papaya
evm.TU.supercontig_5.165
I
0.785
evm.TU.supercontig_847.1
Carica papaya
evm.TU.supercontig_847.1
I
0.785
evm.TU.supercontig_85.93
Carica papaya
evm.TU.supercontig_85.93
I
0.785
TGA6
Arabidopsis lyrata
fgenesh2_kg.3__1288__AT3G12250.4
I
0.785
OBF5
Arabidopsis lyrata
fgenesh2_kg.6__648__AT5G06960.1
I
0.785
gene00517-v1.0-hybrid
Fragaria vesca
gene00517-v1.0-hybrid
I
0.785
gene21882-v1.0-hybrid
Fragaria vesca
gene21882-v1.0-hybrid
I
0.785
GLYMA03G28320
Glycine max
GLYMA03G28320
I
0.785
GLYMA13G26280
Glycine max
GLYMA13G26280
I
0.785
GLYMA15G37220
Glycine max
GLYMA15G37220
I
0.785
GLYMA19G31050
Glycine max
GLYMA19G31050
I
0.785
GLYMA20G39050
Glycine max
GLYMA20G39050
I
0.785
Gorai.001G122100
Gossypium raimondii
Gorai.001G122100
I
0.785
Gorai.002G228200
Gossypium raimondii
Gorai.002G228200
I
0.785
Gorai.006G141000
Gossypium raimondii
Gorai.006G141000
I
0.785
Gorai.007G352600
Gossypium raimondii
Gorai.007G352600
I
0.785
Gorai.008G185000
Gossypium raimondii
Gorai.008G185000
I
0.785
Gorai.011G217200
Gossypium raimondii
Gorai.011G217200
I
0.785
Gorai.013G001700
Gossypium raimondii
Gorai.013G001700
I
0.785
Gorai.013G081100
Gossypium raimondii
Gorai.013G081100
I
0.785
GRMZM2G030280
Zea mays
GRMZM2G030280
I
0.785
GSMUA_Achr10G00340_001
Musa acuminata
GSMUA_Achr10G00340_001
I
0.785
GSMUA_Achr11G25140_001
Musa acuminata
GSMUA_Achr11G25140_001
I
0.785
GSMUA_Achr3G25020_001
Musa acuminata
GSMUA_Achr3G25020_001
I
0.785
GSMUA_Achr8G05800_001
Musa acuminata
GSMUA_Achr8G05800_001
I
0.785
HBP1B_WHEAT
Triticum aestivum
HBP1B_WHEAT
D
0.785
LPERR01G10700
Leersia perrieri
LPERR01G10700
I
0.785
Lus10008658.g
Linum usitatissimum
Lus10008658.g
I
0.785
Lus10024140.g
Linum usitatissimum
Lus10024140.g
I
0.785
Lus10026166.g
Linum usitatissimum
Lus10026166.g
I
0.785
MDP0000262210
Malus domestica
MDP0000262210
I
0.785
MDP0000300532
Malus domestica
MDP0000300532
I
0.785
MDP0000307943
Malus domestica
MDP0000307943
I
0.785
MDP0000320322
Malus domestica
MDP0000320322
I
0.785
MDP0000320524
Malus domestica
MDP0000320524
I
0.785
MDP0000536881
Malus domestica
MDP0000536881
I
0.785
mgf005858m
Mimulus guttatus
mgf005858m
I
0.785
mgf025345m
Mimulus guttatus
mgf025345m
I
0.785
MTR_7g089800
Medicago truncatula
MTR_7g089800
I
0.785
MTR_8g040120
Medicago truncatula
MTR_8g040120
I
0.785
OB01G21470
Oryza brachyantha
OB01G21470
I
0.785
OBART01G11380
Oryza barthii
OBART01G11380
I
0.785
ONIVA01G13810
Oryza nivara
ONIVA01G13810
I
0.785
OPUNC01G11270
Oryza punctata
OPUNC01G11270
I
0.785
orange1.1g015258m.g
Citrus sinensis
orange1.1g015258m.g
I
0.785
orange1.1g038233m.g
Citrus sinensis
orange1.1g038233m.g
I
0.785
orange1.1g045786m.g
Citrus sinensis
orange1.1g045786m.g
I
0.785
ORUFI01G12420
Oryza rufipogon
ORUFI01G12420
I
0.785
TGA2.3
Oryza sativa
OS01G0279900
I
0.785
Pavir.Eb01160
Panicum virgatum
Pavir.Eb01160
I
0.785
PGSC0003DMG400009449
Solanum tuberosum
PGSC0003DMG400009449
I
0.785
PK09021.1
Cannabis sativa
PK09021.1
D
0.785
PK13754.1
Cannabis sativa
PK13754.1
I
0.785
PK21698.1
Cannabis sativa
PK21698.1
I
0.785
Pm016643
Prunus mume
Pm016643
I
0.785
Pm025995
Prunus mume
Pm025995
I
0.785
Pm028917
Prunus mume
Pm028917
I
0.785
POPTR_0001s06700
Populus trichocarpa
POPTR_0001s06700
I
0.785
POPTR_0006s03720
Populus trichocarpa
POPTR_0006s03720
I
0.785
PAN
Populus trichocarpa
POPTR_0008s11710
I
0.785
POPTR_0016s03590
Populus trichocarpa
POPTR_0016s03590
I
0.785
PRUPE_ppa003825mg
Prunus persica
PRUPE_ppa003825mg
I
0.785
PRUPE_ppa005279mg
Prunus persica
PRUPE_ppa005279mg
I
0.785
SapurV1A.0079s0330
Salix purpurea
SapurV1A.0079s0330
I
0.785
SapurV1A.0189s0240
Salix purpurea
SapurV1A.0189s0240
I
0.785
SapurV1A.0196s0260
Salix purpurea
SapurV1A.0196s0260
I
0.785
SapurV1A.1761s0020
Salix purpurea
SapurV1A.1761s0020
I
0.785
Sb03g006790
Sorghum bicolor
Sb03g006790
I
0.785
Si002195m.g
Setaria italica
Si002195m.g
I
0.785
Solyc11g064950.1
Solanum lycopersicum
Solyc11g064950.1
I
0.785
TCM_011845
Theobroma cacao
TCM_011845
I
0.785
TCM_023491
Theobroma cacao
TCM_023491
I
0.785
TCM_023492
Theobroma cacao
TCM_023492
I
0.785
TCM_024862
Theobroma cacao
TCM_024862
I
0.785
Thhalv10014082m.g
Eutrema salsugineum
Thhalv10014082m.g
I
0.785
Thhalv10021187m.g
Eutrema salsugineum
Thhalv10021187m.g
I
0.785
TRAES3BF003000030CFD_g
Triticum aestivum
TRAES3BF003000030CFD_g
I
0.785
PAN
Vitis vinifera
VIT_01s0011g03230
I
0.785
VIT_08s0007g05170
Vitis vinifera
VIT_08s0007g05170
I
0.785
TGA10
Vitis vinifera
VIT_08s0007g06160
I
0.785
VIT_13s0084g00660
Vitis vinifera
VIT_13s0084g00660
I
0.785