CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.003G185700
(
Gossypium raimondii
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00170 (bZIP_1)
IPR011616
Gorai.003G185700
T071898_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK23964.1
M01160_2.00
Cannabis sativa
DNKMCACGTV
BACGTGKMNH
PBM
Lambert et al.(2019)
pTH10151
0.884
0.875
BZIP68
M01770_2.00
Arabidopsis thaliana
BMCASGBND
HNVCSTGKV
PBM
Weirauch et al.(2014)
pTH8192
0.879
0.828
BZIP68
M06752_2.00
Arabidopsis thaliana
DNWKNHSACGTGGCR
YGCCACGTSDNMWNH
Dap-seq
OMalley et al.(2016)
bZIP68_col_a
0.879
0.828
GBF1
M01783_2.00
Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD
PBM
Weirauch et al.(2014)
pTH7259
0.846
0.688
GBF1
M09913_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1_01
0.846
0.688
GBF1
M09914_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1F_Q2
0.846
0.688
GBF1
M09915_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1_Q2_01
0.846
0.688
GBF1
M09916_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GBF1_Q2
0.846
0.688
BZIP16
M06764_2.00
Arabidopsis thaliana
DDWKVYSACGTGGCA
TGCCACGTSRBMWHH
Dap-seq
OMalley et al.(2016)
bZIP16_colamp_a
0.842
0.797
BZIP16
M06765_2.00
Arabidopsis thaliana
DDWKVHSACGTGGCA
TGCCACGTSDBMWHH
Dap-seq
OMalley et al.(2016)
bZIP16_col_v3a
0.842
0.797
HBP1A_WHEAT
M10041_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HBP1A_Q2
0.822
0.766
HBP1A_WHEAT
M10042_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HBPA1_Q6_01
0.822
0.766
Q40645_ORYSA
M10050_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$OSBZ8_Q6
0.804
0.594
Q41109_PHAVU
M10078_2.00
Phaseolus vulgaris
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ROM_Q2
0.804
0.641
GBF2
M01781_2.00
Arabidopsis thaliana
BMCASSNNN
NNNSSTGKV
PBM
Weirauch et al.(2014)
pTH7258
0.801
0.562
TAF1_TOBAC
M10079_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAF1_01
0.799
0.625
TAF1_TOBAC
M10080_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAF1_Q2
0.799
0.625
PK09653.1
M01156_2.00
Cannabis sativa
NNMCASVNNN
NNNBSTGKNN
PBM
Lambert et al.(2019)
pTH10114
0.795
0.625
CPRF1_PETCR
M10066_2.00
Petroselinum crispum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CPRF1_01
0.787
0.578
CPRF1_PETCR
M10067_2.00
Petroselinum crispum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CPRF1_Q2
0.787
0.578
CPRF1_PETCR
M10068_2.00
Petroselinum crispum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CPRF_Q2
0.787
0.578
EmBP-1
M02659_2.00
Triticum aestivum
CCACGTSW
WSACGTGG
SELEX
Mathelier et al.(2014)
MA0128.1
0.787
0.609
EMBP1_WHEAT
M09921_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EMBP1_02
0.787
0.609
EMBP1_WHEAT
M09922_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EMBP1_Q2
0.787
0.609
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.003G185700.1
bZIP
300
363
ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRSEANRIKSEYEQLLAENT
Gorai.003G185700.2
bZIP
299
362
ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRSEANRIKSEYEQLLAENT
Gorai.003G185700.3
bZIP
300
363
ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRSEANRIKSEYEQLLAENT
Gorai.003G185700.4
bZIP
299
362
ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRSEANRIKSEYEQLLAENT
Gorai.003G185700.5
bZIP
213
277
ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRSEANRIKSEYEQLLAENTS
Links
Other
bZIP
family TFs
Other
Gossypium raimondii
TFs
301 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy