Pavir.Fb01750 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Fb01750 T072395_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18009.1
M01158_2.00 		Cannabis sativa
NNACACGTGN
NCACGTGTNN		 PBM
Lambert et al.(2019)
pTH10272 		0.823 0.787
ABF2
M01771_2.00 		Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN		 PBM
Weirauch et al.(2014)
pTH8103 		0.817 0.803
ABF2
M06755_2.00 		Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN		 Dap-seq
OMalley et al.(2016)
ABF2_col_v3a 		0.817 0.803
ABF4
M01056_2.00 		Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7315 		0.816 0.770
ABF4
M01057_2.00 		Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN		 PBM
Sullivan et al.(2014)
pTH7551 		0.816 0.770
ABF4
M09911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF4_Q2 		0.816 0.770
ABF3
M01782_2.00 		Arabidopsis thaliana
ACACGTGT
ACACGTGT		 PBM
Weirauch et al.(2014)
pTH7240 		0.813 0.639
ABF3
M09912_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF3_Q2 		0.813 0.639
ABF1
M01772_2.00 		Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN		 PBM
Weirauch et al.(2014)
pTH8837 		0.804 0.656
ABF1
M01773_2.00 		Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN		 PBM
Weirauch et al.(2014)
pTH8853 		0.804 0.656
ABF1
M02656_2.00 		Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV		 SELEX
Mathelier et al.(2014)
MA0570.1 		0.804 0.656
ABF1
M09906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_01 		0.804 0.656
ABF1
M09907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_02 		0.804 0.656
ABF1
M09908_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_03 		0.804 0.656
OS08G0471950
M10047_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TRAB1_Q2 		0.800 0.721
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb01750.1.p bZIP 139 199

Links

Other bZIP family TFs
Other Panicum virgatum TFs

208 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I 0.857
Cla022926 Citrullus lanatus Cla022926 I 0.852
Cucsa.396070 Cucumis sativus Cucsa.396070 I 0.852
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I 0.851
Bo3g073080 Brassica oleracea Bo3g073080 I 0.841
LPERR09G09170 Leersia perrieri LPERR09G09170 I 0.839
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I 0.839
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I 0.838
Si013904m.g Setaria italica Si013904m.g I 0.836
BGIOSGA030899 Oryza indica BGIOSGA030899 I 0.834
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I 0.834
OMERI09G10130 Oryza meridionalis OMERI09G10130 I 0.834
OPUNC09G11090 Oryza punctata OPUNC09G11090 I 0.834
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I 0.834
OS09G0456200 Oryza sativa OS09G0456200 I 0.834
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I 0.833
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.831
OBART02G33770 Oryza barthii OBART02G33770 I 0.830
Si030114m.g Setaria italica Si030114m.g I 0.830
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.830
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.830
TCM_007074 Theobroma cacao TCM_007074 I 0.828
mgf002047m Mimulus guttatus mgf002047m I 0.828
mgf007524m Mimulus guttatus mgf007524m I 0.828
mgf014602m Mimulus guttatus mgf014602m I 0.828
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I 0.828
MDP0000248567 Malus domestica MDP0000248567 I 0.828
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I 0.825
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.825
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I 0.825
Pm021430 Prunus mume Pm021430 I 0.825
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.825
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.825
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.825
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I 0.825
PK02169.1 Cannabis sativa PK02169.1 I 0.825
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.824
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.824
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.824
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.823
LPERR02G27610 Leersia perrieri LPERR02G27610 I 0.823
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.823
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.823
PK18009.1 Cannabis sativa PK18009.1 D 0.823
MTR_3g101780 Medicago truncatula MTR_3g101780 I 0.822
Sb07g022965 Sorghum bicolor Sb07g022965 I 0.822
ABF2 Vitis vinifera VIT_18s0001g10450 I 0.822
Cla016272 Citrullus lanatus Cla016272 I 0.822
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.822
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I 0.821
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I 0.821
30170.m013868 Ricinus communis 30170.m013868 I 0.821
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I 0.821
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I 0.821
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.821
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I 0.821
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I 0.821
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I 0.821
TCM_033824 Theobroma cacao TCM_033824 I 0.820
Pm005288 Prunus mume Pm005288 I 0.820
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.820
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.820
GLYMA04G04170 Glycine max GLYMA04G04170 I 0.819
GLYMA06G04353 Glycine max GLYMA06G04353 I 0.819
Ca_01548 Cicer arietinum Ca_01548 I 0.819
OB09G19140 Oryza brachyantha OB09G19140 I 0.818
Lus10027897.g Linum usitatissimum Lus10027897.g I 0.818
ABF2 Arabidopsis thaliana AT1G45249 D 0.817
Bo6g006970 Brassica oleracea Bo6g006970 I 0.817
Bra040260 Brassica rapa Bra040260 I 0.817
BRADI4G32090 Brachypodium distachyon BRADI4G32090 I 0.817
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I 0.817
MLOC_66546 Hordeum vulgare MLOC_66546 I 0.817
OB08G24950 Oryza brachyantha OB08G24950 I 0.817
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.817
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.817
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I 0.817
Carubv10009177m.g Capsella rubella Carubv10009177m.g I 0.817
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I 0.817
ABF4 Arabidopsis thaliana AT3G19290 D 0.816
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.816
29801.m003176 Ricinus communis 29801.m003176 I 0.816
Carubv10009399m.g Capsella rubella Carubv10009399m.g I 0.816
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I 0.815
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.815
BGIOSGA005551 Oryza indica BGIOSGA005551 I 0.814
GRMZM2G002075 Zea mays GRMZM2G002075 I 0.814
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I 0.814
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I 0.814
MTR_4g085910 Medicago truncatula MTR_4g085910 I 0.814
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I 0.814
OMERI02G32150 Oryza meridionalis OMERI02G32150 I 0.814
ONIVA02G33490 Oryza nivara ONIVA02G33490 I 0.814
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I 0.814
BZIP23 Oryza sativa OS02G0766700 I 0.814
ABF3 Arabidopsis thaliana AT4G34000 D 0.813
Bo5g115300 Brassica oleracea Bo5g115300 I 0.813
Bra022409 Brassica rapa Bra022409 I 0.813
Bra037533 Brassica rapa Bra037533 I 0.813
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I 0.813
GLYMA07G33600 Glycine max GLYMA07G33600 I 0.813
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I 0.813
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I 0.813
Carubv10006251m.g Capsella rubella Carubv10006251m.g I 0.813
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I 0.813
Lus10002399.g Linum usitatissimum Lus10002399.g I 0.813
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I 0.813
mgf020824m Mimulus guttatus mgf020824m I 0.812
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.812
POPTR_0009s16610 Populus trichocarpa POPTR_0009s16610 I 0.811
SapurV1A.0374s0070 Salix purpurea SapurV1A.0374s0070 I 0.811
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.810
cassava16074.m1 Manihot esculenta cassava16074.m1 I 0.810
ABI5 Arabidopsis thaliana AT2G36270 D 0.809
30055.m001548 Ricinus communis 30055.m001548 I 0.809
BGIOSGA022536 Oryza indica BGIOSGA022536 I 0.808
BGIOSGA040605 Oryza indica BGIOSGA040605 I 0.808
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I 0.808
LPERR06G06440 Leersia perrieri LPERR06G06440 I 0.808
OB06G16510 Oryza brachyantha OB06G16510 I 0.808
OBART06G07070 Oryza barthii OBART06G07070 I 0.808
OGLUM06G07500 Oryza glumaepatula OGLUM06G07500 I 0.808
OMERI06G08210 Oryza meridionalis OMERI06G08210 I 0.808
ONIVA06G08350 Oryza nivara ONIVA06G08350 I 0.808
OPUNC06G06690 Oryza punctata OPUNC06G06690 I 0.808
ORGLA06G0066000 Oryza glaberrima ORGLA06G0066000 I 0.808
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I 0.808
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.808
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I 0.808
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I 0.808
Carubv10013729m.g Capsella rubella Carubv10013729m.g I 0.808
Gorai.009G275700 Gossypium raimondii Gorai.009G275700 I 0.808
GRMZM2G157722 Zea mays GRMZM2G157722 I 0.807
GRMZM2G478417 Zea mays GRMZM2G478417 I 0.807
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I 0.806
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I 0.805
ABF1 Arabidopsis thaliana AT1G49720 D 0.804
LPERR08G14740 Leersia perrieri LPERR08G14740 I 0.804
TCM_022574 Theobroma cacao TCM_022574 I 0.804
Bostr.26675s0197 Boechera stricta Bostr.26675s0197 I 0.804
GSMUA_Achr6G04270_001 Musa acuminata GSMUA_Achr6G04270_001 I 0.803
TRIUR3_26781 Triticum urartu TRIUR3_26781 I 0.803
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I 0.803
Bo7g116570 Brassica oleracea Bo7g116570 I 0.802
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I 0.802
Ca_06458 Cicer arietinum Ca_06458 I 0.802
Bo6g018480 Brassica oleracea Bo6g018480 I 0.801
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I 0.801
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I 0.801
Sb06g026410 Sorghum bicolor Sb06g026410 I 0.801
Bostr.12302s0127 Boechera stricta Bostr.12302s0127 I 0.801
OS08G0471950 Oryza sativa OS08G0471950 D 0.800
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I 0.800
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I 0.800
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I 0.800
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I 0.799
Bra018800 Brassica rapa Bra018800 I 0.799
OB02G40680 Oryza brachyantha OB02G40680 I 0.799
OLONG_000475 Oryza longistaminata OLONG_000475 I 0.799
ONIVA08G19830 Oryza nivara ONIVA08G19830 I 0.799
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I 0.799
BGIOSGA028831 Oryza indica BGIOSGA028831 I 0.798
Bo1g007700 Brassica oleracea Bo1g007700 I 0.798
Bo1g114840 Brassica oleracea Bo1g114840 I 0.798
OPUNC08G15700 Oryza punctata OPUNC08G15700 I 0.798
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I 0.798
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I 0.798
Pavir.J00256 Panicum virgatum Pavir.J00256 I 0.797
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I 0.797
mgf015092m Mimulus guttatus mgf015092m I 0.794
Gorai.009G212600 Gossypium raimondii Gorai.009G212600 I 0.794
Sb03g040510 Sorghum bicolor Sb03g040510 I 0.793
Sb08g003760 Sorghum bicolor Sb08g003760 I 0.793
SELMODRAFT_227594 Selaginella moellendorffii SELMODRAFT_227594 I 0.793
SELMODRAFT_451399 Selaginella moellendorffii SELMODRAFT_451399 I 0.793
MDP0000296303 Malus domestica MDP0000296303 I 0.793
OLONG_001053 Oryza longistaminata OLONG_001053 I 0.792
Sb04g034190 Sorghum bicolor Sb04g034190 I 0.792
Si017618m.g Setaria italica Si017618m.g I 0.792
TRIUR3_29638 Triticum urartu TRIUR3_29638 I 0.791
Cla017970 Citrullus lanatus Cla017970 I 0.791
ORUFI12G20810 Oryza rufipogon ORUFI12G20810 I 0.790
BZIP46 Oryza sativa OS06G0211200 I 0.790
GRMZM2G033413 Zea mays GRMZM2G033413 I 0.789
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I 0.789
Si001731m.g Setaria italica Si001731m.g I 0.789
Si006889m.g Setaria italica Si006889m.g I 0.789
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I 0.789
Bra011485 Brassica rapa Bra011485 I 0.787
GLYMA13G22061 Glycine max GLYMA13G22061 I 0.787
cassava11518.m1 Manihot esculenta cassava11518.m1 I 0.787
mgf002176m Mimulus guttatus mgf002176m I 0.787
Lus10009755.g Linum usitatissimum Lus10009755.g I 0.787
OBART08G17810 Oryza barthii OBART08G17810 I 0.786
cassava32856.m1 Manihot esculenta cassava32856.m1 I 0.785
Cucsa.241090 Cucumis sativus Cucsa.241090 I 0.785
Cucsa.385090 Cucumis sativus Cucsa.385090 I 0.785
MTR_7g104480 Medicago truncatula MTR_7g104480 I 0.784
OBART01G37980 Oryza barthii OBART01G37980 I 0.784
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.784
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.784
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.784
Ca_00791 Cicer arietinum Ca_00791 I 0.784
Lus10021369.g Linum usitatissimum Lus10021369.g I 0.784
Sb10g007090 Sorghum bicolor Sb10g007090 I 0.782
29625.m000702 Ricinus communis 29625.m000702 I 0.782
Lus10014194.g Linum usitatissimum Lus10014194.g I 0.782
Lus10022720.g Linum usitatissimum Lus10022720.g I 0.782