Pavir.J00256 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.J00256 T072430_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF3
M01782_2.00 		Arabidopsis thaliana
ACACGTGT
ACACGTGT		 PBM
Weirauch et al.(2014)
pTH7240 		0.820 0.758
ABF3
M09912_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF3_Q2 		0.820 0.758
ABF1
M01772_2.00 		Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN		 PBM
Weirauch et al.(2014)
pTH8837 		0.797 0.597
ABF1
M01773_2.00 		Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN		 PBM
Weirauch et al.(2014)
pTH8853 		0.797 0.597
ABF1
M02656_2.00 		Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV		 SELEX
Mathelier et al.(2014)
MA0570.1 		0.797 0.597
ABF1
M09906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_01 		0.797 0.597
ABF1
M09907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_02 		0.797 0.597
ABF1
M09908_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_03 		0.797 0.597
ABF4
M01056_2.00 		Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7315 		0.796 0.597
ABF4
M01057_2.00 		Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN		 PBM
Sullivan et al.(2014)
pTH7551 		0.796 0.597
ABF4
M09911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF4_Q2 		0.796 0.597
PK18009.1
M01158_2.00 		Cannabis sativa
NNACACGTGN
NCACGTGTNN		 PBM
Lambert et al.(2019)
pTH10272 		0.794 0.613
ABF2
M01771_2.00 		Arabidopsis thaliana
NNYACGTGTHNNN
NNNDACACGTRNN		 PBM
Weirauch et al.(2014)
pTH8103 		0.783 0.629
ABF2
M06755_2.00 		Arabidopsis thaliana
NNWNNTGMCACGTSWBMH
DKVWSACGTGKCANNWNN		 Dap-seq
OMalley et al.(2016)
ABF2_col_v3a 		0.783 0.629
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J00256.1.p bZIP 274 336
Pavir.J00256.2.p bZIP 274 320

Links

Other bZIP family TFs
Other Panicum virgatum TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb04g034190 Sorghum bicolor Sb04g034190 I 0.872
OLONG_001053 Oryza longistaminata OLONG_001053 I 0.852
Si017618m.g Setaria italica Si017618m.g I 0.848
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.840
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.840
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.833
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.833
GRMZM2G033413 Zea mays GRMZM2G033413 I 0.831
Si006889m.g Setaria italica Si006889m.g I 0.831
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I 0.831
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.828
BGIOSGA005551 Oryza indica BGIOSGA005551 I 0.823
OBART02G33770 Oryza barthii OBART02G33770 I 0.823
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I 0.823
OMERI02G32150 Oryza meridionalis OMERI02G32150 I 0.823
ONIVA02G33490 Oryza nivara ONIVA02G33490 I 0.823
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I 0.823
BZIP23 Oryza sativa OS02G0766700 I 0.823
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.822
ABF3 Arabidopsis thaliana AT4G34000 D 0.820
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I 0.820
LPERR09G09170 Leersia perrieri LPERR09G09170 I 0.820
ORUFI12G20810 Oryza rufipogon ORUFI12G20810 I 0.820
BZIP46 Oryza sativa OS06G0211200 I 0.820
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I 0.820
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I 0.820
Carubv10006251m.g Capsella rubella Carubv10006251m.g I 0.820
OB02G40680 Oryza brachyantha OB02G40680 I 0.819
Bo1g007700 Brassica oleracea Bo1g007700 I 0.817
BGIOSGA030899 Oryza indica BGIOSGA030899 I 0.815
Bo7g116570 Brassica oleracea Bo7g116570 I 0.815
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I 0.815
OMERI09G10130 Oryza meridionalis OMERI09G10130 I 0.815
OPUNC09G11090 Oryza punctata OPUNC09G11090 I 0.815
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I 0.815
OS09G0456200 Oryza sativa OS09G0456200 I 0.815
Si030114m.g Setaria italica Si030114m.g I 0.814
29801.m003176 Ricinus communis 29801.m003176 I 0.814
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.811
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.811
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I 0.808
PK02169.1 Cannabis sativa PK02169.1 I 0.807
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.805
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I 0.805
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.805
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.805
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.805
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I 0.804
LPERR02G27610 Leersia perrieri LPERR02G27610 I 0.804
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.804
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.804
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I 0.804
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.804
MTR_3g101780 Medicago truncatula MTR_3g101780 I 0.803
OB08G24950 Oryza brachyantha OB08G24950 I 0.803
ABF2 Vitis vinifera VIT_18s0001g10450 I 0.803
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.803
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I 0.803
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I 0.803
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I 0.802
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I 0.802
Si013904m.g Setaria italica Si013904m.g I 0.802
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I 0.802
30170.m013868 Ricinus communis 30170.m013868 I 0.802
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I 0.802
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I 0.802
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.802
Lus10002399.g Linum usitatissimum Lus10002399.g I 0.802
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I 0.802
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I 0.802
Bo5g115300 Brassica oleracea Bo5g115300 I 0.801
Bra022409 Brassica rapa Bra022409 I 0.801
Bra037533 Brassica rapa Bra037533 I 0.801
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I 0.801
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I 0.801
GLYMA04G04170 Glycine max GLYMA04G04170 I 0.800
GLYMA06G04353 Glycine max GLYMA06G04353 I 0.800
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I 0.800
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I 0.800
Ca_01548 Cicer arietinum Ca_01548 I 0.800
Pm021430 Prunus mume Pm021430 I 0.800
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I 0.800
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I 0.800
MLOC_53580 Hordeum vulgare MLOC_53580 N 0.799
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I 0.799
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.799
TCM_007074 Theobroma cacao TCM_007074 I 0.799
Traes_6AL_E8CD2C02B Triticum aestivum Traes_6AL_E8CD2C02B N 0.799
mgf002047m Mimulus guttatus mgf002047m I 0.799
mgf007524m Mimulus guttatus mgf007524m I 0.799
mgf014602m Mimulus guttatus mgf014602m I 0.799
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I 0.799
MDP0000248567 Malus domestica MDP0000248567 I 0.799
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I 0.799
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I 0.798
ABF1 Arabidopsis thaliana AT1G49720 D 0.797
OB09G19140 Oryza brachyantha OB09G19140 I 0.797
mgf020824m Mimulus guttatus mgf020824m I 0.797
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I 0.797
Pavir.J05659 Panicum virgatum Pavir.J05659 I 0.797
ABF4 Arabidopsis thaliana AT3G19290 D 0.796
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I 0.796
MLOC_20326 Hordeum vulgare MLOC_20326 N 0.796
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.796
Traes_7DS_C6A3C10A6 Triticum aestivum Traes_7DS_C6A3C10A6 N 0.796
TRIUR3_23754 Triticum urartu TRIUR3_23754 N 0.796
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I 0.796
Carubv10013729m.g Capsella rubella Carubv10013729m.g I 0.796
Lus10027897.g Linum usitatissimum Lus10027897.g I 0.796
GRMZM2G002075 Zea mays GRMZM2G002075 I 0.795
MLOC_66546 Hordeum vulgare MLOC_66546 I 0.795
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.795
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.795
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.795
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I 0.794
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I 0.794
PK18009.1 Cannabis sativa PK18009.1 D 0.794
BRADI3G57960 Brachypodium distachyon BRADI3G57960 N 0.793
Sb10g007090 Sorghum bicolor Sb10g007090 I 0.793
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I 0.793
Cla016272 Citrullus lanatus Cla016272 I 0.792
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.792
GRMZM5G858197 Zea mays GRMZM5G858197 I 0.791
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I 0.791
Sb03g040970 Sorghum bicolor Sb03g040970 I 0.791
Si003247m.g Setaria italica Si003247m.g I 0.791
Pavir.Ea03718 Panicum virgatum Pavir.Ea03718 I 0.791
Bo3g073080 Brassica oleracea Bo3g073080 I 0.790
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I 0.789
GRMZM2G157722 Zea mays GRMZM2G157722 I 0.788
GRMZM2G478417 Zea mays GRMZM2G478417 I 0.788
Sb07g022965 Sorghum bicolor Sb07g022965 I 0.788
Traes_6DL_F7015CE89 Triticum aestivum Traes_6DL_F7015CE89 N 0.788
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.788
Eucgr.I01145 Eucalyptus grandis Eucgr.I01145 I 0.787
29625.m000702 Ricinus communis 29625.m000702 I 0.786
Lus10014194.g Linum usitatissimum Lus10014194.g I 0.786
Lus10022720.g Linum usitatissimum Lus10022720.g I 0.786
MDP0000296303 Malus domestica MDP0000296303 I 0.786
Pavir.J31353 Panicum virgatum Pavir.J31353 I 0.786
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I 0.785
ABF2 Arabidopsis thaliana AT1G45249 D 0.783
BGIOSGA028831 Oryza indica BGIOSGA028831 I 0.783
Bo6g006970 Brassica oleracea Bo6g006970 I 0.783
Bra040260 Brassica rapa Bra040260 I 0.783
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I 0.783
LPERR08G14740 Leersia perrieri LPERR08G14740 I 0.783
OPUNC08G15700 Oryza punctata OPUNC08G15700 I 0.783
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I 0.783
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I 0.783
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I 0.783
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I 0.782
GSMUA_Achr6G04270_001 Musa acuminata GSMUA_Achr6G04270_001 I 0.782
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I 0.782