Pavir.J02462 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.J02462 T072438_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EmBP-1
M02659_2.00 		Triticum aestivum
CCACGTSW
WSACGTGG		 SELEX
Mathelier et al.(2014)
MA0128.1 		0.895 0.875
EMBP1_WHEAT
M09921_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EMBP1_02 		0.895 0.875
EMBP1_WHEAT
M09922_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EMBP1_Q2 		0.895 0.875
GBF1
M01783_2.00 		Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD		 PBM
Weirauch et al.(2014)
pTH7259 		0.809 0.609
GBF1
M09913_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_01 		0.809 0.609
GBF1
M09914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1F_Q2 		0.809 0.609
GBF1
M09915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2_01 		0.809 0.609
GBF1
M09916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2 		0.809 0.609
TAF1_TOBAC
M10079_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAF1_01 		0.805 0.656
TAF1_TOBAC
M10080_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAF1_Q2 		0.805 0.656
BZIP16
M06764_2.00 		Arabidopsis thaliana
DDWKVYSACGTGGCA
TGCCACGTSRBMWHH		 Dap-seq
OMalley et al.(2016)
bZIP16_colamp_a 		0.793 0.625
BZIP16
M06765_2.00 		Arabidopsis thaliana
DDWKVHSACGTGGCA
TGCCACGTSDBMWHH		 Dap-seq
OMalley et al.(2016)
bZIP16_col_v3a 		0.793 0.625
BZIP68
M01770_2.00 		Arabidopsis thaliana
BMCASGBND
HNVCSTGKV		 PBM
Weirauch et al.(2014)
pTH8192 		0.785 0.641
BZIP68
M06752_2.00 		Arabidopsis thaliana
DNWKNHSACGTGGCR
YGCCACGTSDNMWNH		 Dap-seq
OMalley et al.(2016)
bZIP68_col_a 		0.785 0.641
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J02462.1.p bZIP 388 458
Pavir.J02462.2.p bZIP 387 457

Links

Other bZIP family TFs
Other Panicum virgatum TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb01g004080 Sorghum bicolor Sb01g004080 I 0.907
Pavir.J09275 Panicum virgatum Pavir.J09275 I 0.907
BGIOSGA013793 Oryza indica BGIOSGA013793 I 0.905
OMERI06G11100 Oryza meridionalis OMERI06G11100 I 0.905
EMBP1_WHEAT Triticum aestivum EMBP1_WHEAT D 0.895
F775_14728 Aegilops tauschii F775_14728 I 0.895
EmBP-1 Triticum aestivum Traes_5AL_9BC38814C D 0.895
Traes_5BL_F3018E8CA Triticum aestivum Traes_5BL_F3018E8CA I 0.895
Traes_5DL_75AEE92BB Triticum aestivum Traes_5DL_75AEE92BB I 0.895
MLOC_79342 Hordeum vulgare MLOC_79342 I 0.892
Traes_7DL_67C4287B2 Triticum aestivum Traes_7DL_67C4287B2 I 0.891
LPERR03G32540 Leersia perrieri LPERR03G32540 I 0.883
BGIOSGA025382 Oryza indica BGIOSGA025382 I 0.870
BRADI1G04510 Brachypodium distachyon BRADI1G04510 I 0.870
GRMZM2G095078 Zea mays GRMZM2G095078 I 0.870
GRMZM2G171370 Zea mays GRMZM2G171370 I 0.870
LPERR07G06120 Leersia perrieri LPERR07G06120 I 0.870
OB07G15280 Oryza brachyantha OB07G15280 I 0.870
OBART07G07070 Oryza barthii OBART07G07070 I 0.870
OGLUM07G06770 Oryza glumaepatula OGLUM07G06770 I 0.870
OLONG_021599 Oryza longistaminata OLONG_021599 I 0.870
OMERI07G05820 Oryza meridionalis OMERI07G05820 I 0.870
ONIVA07G05320 Oryza nivara ONIVA07G05320 I 0.870
OPUNC07G06790 Oryza punctata OPUNC07G06790 I 0.870
ORUFI07G07050 Oryza rufipogon ORUFI07G07050 I 0.870
OS07G0209800 Oryza sativa OS07G0209800 I 0.870
Sb02g006350 Sorghum bicolor Sb02g006350 I 0.870
Si030123m.g Setaria italica Si030123m.g I 0.870
Pavir.Ba03287 Panicum virgatum Pavir.Ba03287 I 0.870
Pavir.Bb00931 Panicum virgatum Pavir.Bb00931 I 0.870
Si039367m.g Setaria italica Si039367m.g I 0.869
BRADI1G54180 Brachypodium distachyon BRADI1G54180 I 0.861
Traes_2BL_245DDBC7B Triticum aestivum Traes_2BL_245DDBC7B I 0.861
TRIUR3_31142 Triticum urartu TRIUR3_31142 I 0.861
GRMZM5G884349 Zea mays GRMZM5G884349 I 0.837
estExt_fgenesh2_pg.C_Chr_020452 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_020452 I 0.836
GSMUA_Achr6G00170_001 Musa acuminata GSMUA_Achr6G00170_001 I 0.835
estExt_fgenesh1_pg.C_10522 Micromonas pusilla estExt_fgenesh1_pg.C_10522 I 0.833
Bra010572 Brassica rapa Bra010572 I 0.822
Thhalv10025733m.g Eutrema salsugineum Thhalv10025733m.g I 0.822
gw1.33.173.1 Physcomitrella patens gw1.33.173.1 I 0.820
29646.m001068 Ricinus communis 29646.m001068 I 0.819
cassava45491.m1 Manihot esculenta cassava45491.m1 I 0.819
GSMUA_Achr4G33130_001 Musa acuminata GSMUA_Achr4G33130_001 I 0.817
POPTR_0014s08990 Populus trichocarpa POPTR_0014s08990 I 0.817
SELMODRAFT_38592 Selaginella moellendorffii SELMODRAFT_38592 I 0.817
SELMODRAFT_38594 Selaginella moellendorffii SELMODRAFT_38594 I 0.817
Gorai.007G205700 Gossypium raimondii Gorai.007G205700 I 0.816
Bo1g005460 Brassica oleracea Bo1g005460 I 0.812
Bra005335 Brassica rapa Bra005335 I 0.812
Bra011701 Brassica rapa Bra011701 I 0.812
SELMODRAFT_135978 Selaginella moellendorffii SELMODRAFT_135978 I 0.812
Cla014415 Citrullus lanatus Cla014415 I 0.812
Cucsa.104970 Cucumis sativus Cucsa.104970 I 0.812
AMTR_s00059p00094730 Amborella trichopoda AMTR_s00059p00094730 I 0.811
GLYMA08G34280 Glycine max GLYMA08G34280 I 0.811
Eucgr.H01256 Eucalyptus grandis Eucgr.H01256 I 0.811
Gorai.008G068900 Gossypium raimondii Gorai.008G068900 I 0.811
evm.TU.supercontig_158.7 Carica papaya evm.TU.supercontig_158.7 I 0.810
GBF1 Arabidopsis thaliana AT4G36730 D 0.809
GBF1 Arabidopsis lyrata scaffold_700433.1 I 0.809
Bostr.7867s1529 Boechera stricta Bostr.7867s1529 I 0.809
Cagra.5996s0003 Capsella grandiflora Cagra.5996s0003 I 0.809
Carubv10005287m.g Capsella rubella Carubv10005287m.g I 0.809
POPTR_0005s12750 Populus trichocarpa POPTR_0005s12750 I 0.806
POPTR_0007s12460 Populus trichocarpa POPTR_0007s12460 I 0.806
mgf008605m Mimulus guttatus mgf008605m I 0.806
GLYMA02G06550 Glycine max GLYMA02G06550 I 0.805
GLYMA16G25600 Glycine max GLYMA16G25600 I 0.805
MTR_8g077950 Medicago truncatula MTR_8g077950 I 0.805
TAF1_TOBAC Nicotiana tabacum TAF1_TOBAC D 0.805
Thhalv10016740m.g Eutrema salsugineum Thhalv10016740m.g I 0.805
gw1.27.125.1 Physcomitrella patens gw1.27.125.1 I 0.804
SapurV1A.0255s0070 Salix purpurea SapurV1A.0255s0070 I 0.804
gene29546-v1.0-hybrid Fragaria vesca gene29546-v1.0-hybrid I 0.802
SapurV1A.0817s0110 Salix purpurea SapurV1A.0817s0110 I 0.802
gw1.3.298.1 Physcomitrella patens gw1.3.298.1 I 0.801
mgf003302m Mimulus guttatus mgf003302m I 0.801
mgf013423m Mimulus guttatus mgf013423m I 0.801
Bostr.3359s0141 Boechera stricta Bostr.3359s0141 I 0.801
gw2.11.550.1 Micromonas sp RCC299 gw2.11.550.1 I 0.801
Lus10014324.g Linum usitatissimum Lus10014324.g I 0.801
Lus10026033.g Linum usitatissimum Lus10026033.g I 0.801
PGSC0003DMG400012660 Solanum tuberosum PGSC0003DMG400012660 I 0.800
Solyc02g085610.2 Solanum lycopersicum Solyc02g085610.2 I 0.800
mgf000639m Mimulus guttatus mgf000639m I 0.800
mgf005151m Mimulus guttatus mgf005151m I 0.800
mgf014804m Mimulus guttatus mgf014804m I 0.800
MDP0000231274 Malus domestica MDP0000231274 I 0.800
MTR_8g070820 Medicago truncatula MTR_8g070820 I 0.799
Bo4g038560 Brassica oleracea Bo4g038560 I 0.797
PRUPE_ppa006484mg Prunus persica PRUPE_ppa006484mg I 0.797
Pm023132 Prunus mume Pm023132 I 0.797
Cagra.0993s0063 Capsella grandiflora Cagra.0993s0063 I 0.797
gene13716-v1.0-hybrid Fragaria vesca gene13716-v1.0-hybrid I 0.797
MDP0000185553 Malus domestica MDP0000185553 I 0.797
MDP0000286846 Malus domestica MDP0000286846 I 0.797
GLYMA16G15810 Glycine max GLYMA16G15810 I 0.796
PRUPE_ppa008024mg Prunus persica PRUPE_ppa008024mg I 0.796
TCM_005210 Theobroma cacao TCM_005210 I 0.796
GBF1 Vitis vinifera VIT_04s0023g01360 I 0.796
VIT_18s0001g12120 Vitis vinifera VIT_18s0001g12120 I 0.796
Pm026586 Prunus mume Pm026586 I 0.796
Ciclev10025963m.g Citrus clementina Ciclev10025963m.g I 0.796
Gorai.004G153100 Gossypium raimondii Gorai.004G153100 I 0.796
Gorai.008G123200 Gossypium raimondii Gorai.008G123200 I 0.796
orange1.1g018605m.g Citrus sinensis orange1.1g018605m.g I 0.796
PGSC0003DMG400000088 Solanum tuberosum PGSC0003DMG400000088 I 0.795
Solyc01g095460.2 Solanum lycopersicum Solyc01g095460.2 I 0.795
BZIP16 Arabidopsis thaliana AT2G35530 D 0.793
Bostr.23794s0549 Boechera stricta Bostr.23794s0549 I 0.793
Gorai.004G181900 Gossypium raimondii Gorai.004G181900 I 0.792
PDK_20s1372692g002 Phoenix dactylifera PDK_20s1372692g002 I 0.792
TCM_000436 Theobroma cacao TCM_000436 I 0.791
Solyc02g062950.2 Solanum lycopersicum Solyc02g062950.2 I 0.788
chr1.CM0579.280.nd Lotus japonicus chr1.CM0579.280.nd I 0.788
GLYMA01G01740 Glycine max GLYMA01G01740 I 0.786
BZIP68 Arabidopsis thaliana AT1G32150 D 0.785
bZIP68 Arabidopsis lyrata fgenesh2_kg.1__3350__AT1G32150.1 I 0.785
PGSC0003DMG400033876 Solanum tuberosum PGSC0003DMG400033876 I 0.785
Solyc05g050220.2 Solanum lycopersicum Solyc05g050220.2 I 0.785
Ca_15839 Cicer arietinum Ca_15839 I 0.785
Cagra.3359s0011 Capsella grandiflora Cagra.3359s0011 I 0.785
Thhalv10007879m.g Eutrema salsugineum Thhalv10007879m.g I 0.785
PDK_20s1368181g001 Phoenix dactylifera PDK_20s1368181g001 I 0.785
Cla016502 Citrullus lanatus Cla016502 I 0.784
Cucsa.312800 Cucumis sativus Cucsa.312800 I 0.783
F775_07803 Aegilops tauschii F775_07803 I 0.782
MLOC_6711 Hordeum vulgare MLOC_6711 I 0.782
Traes_1AL_F18EC96DF Triticum aestivum Traes_1AL_F18EC96DF I 0.782
Traes_1BL_C5FEAF06E Triticum aestivum Traes_1BL_C5FEAF06E I 0.782
Traes_1DL_23D036A85 Triticum aestivum Traes_1DL_23D036A85 I 0.782
TRIUR3_18341 Triticum urartu TRIUR3_18341 I 0.782