CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo3g003640
(
Brassica oleracea
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Bo3g003640
T081722_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RBE
M01858_2.00
Arabidopsis thaliana
NNNASWN
NWSTNNN
PBM
Weirauch et al.(2014)
pTH7538
0.779
0.957
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo3g003640.1
C2H2 ZF
46
68
YTCSFCGREFKSAQALGGHMNVH
Links
Other
C2H2 ZF
family TFs
Other
Brassica oleracea
TFs
160 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_00917
Aegilops tauschii
F775_00917
I
0.776
F775_21953
Aegilops tauschii
F775_21953
I
0.805
Al_scaffold_0409_3
Arabidopsis lyrata
Al_scaffold_0409_3
I
0.827
SUP
Arabidopsis lyrata
fgenesh2_kg.3__2524__AT3G23130.1
I
0.827
RBE
Arabidopsis lyrata
fgenesh2_kg.6__542__AT5G06070.1
I
0.779
scaffold_403098.1
Arabidopsis lyrata
scaffold_403098.1
I
0.827
ZFP11
Arabidopsis thaliana
AT2G42410
I
0.827
SUP
Arabidopsis thaliana
AT3G23130
I
0.827
AT4G17810
Arabidopsis thaliana
AT4G17810
I
0.817
RBE
Arabidopsis thaliana
AT5G06070
D
0.779
Bostr.13129s0367
Boechera stricta
Bostr.13129s0367
I
0.779
Bostr.19424s0332
Boechera stricta
Bostr.19424s0332
I
0.827
Bostr.25993s0539
Boechera stricta
Bostr.25993s0539
I
0.827
Bostr.30275s0246
Boechera stricta
Bostr.30275s0246
I
0.817
BRADI1G52490
Brachypodium distachyon
BRADI1G52490
I
0.757
BRADI3G55760
Brachypodium distachyon
BRADI3G55760
I
0.766
Bo1g017920
Brassica oleracea
Bo1g017920
I
0.817
Bo1g102390
Brassica oleracea
Bo1g102390
I
0.827
Bo9g176590
Brassica oleracea
Bo9g176590
I
0.779
Bra005874
Brassica rapa
Bra005874
I
0.827
Bra009160
Brassica rapa
Bra009160
I
0.779
Bra013257
Brassica rapa
Bra013257
I
0.817
Bra023759
Brassica rapa
Bra023759
I
0.827
Cagra.2117s0055
Capsella grandiflora
Cagra.2117s0055
I
0.779
Cagra.2636s0028
Capsella grandiflora
Cagra.2636s0028
I
0.827
Cagra.3356s0074
Capsella grandiflora
Cagra.3356s0074
I
0.817
Cagra.3462s0001
Capsella grandiflora
Cagra.3462s0001
I
0.827
Carubv10002935m.g
Capsella rubella
Carubv10002935m.g
I
0.779
Carubv10006881m.g
Capsella rubella
Carubv10006881m.g
I
0.817
Carubv10016073m.g
Capsella rubella
Carubv10016073m.g
I
0.827
Carubv10024766m.g
Capsella rubella
Carubv10024766m.g
I
0.827
evm.TU.supercontig_44.99
Carica papaya
evm.TU.supercontig_44.99
I
0.827
Ca_12901
Cicer arietinum
Ca_12901
I
0.825
Cla008944
Citrullus lanatus
Cla008944
I
0.769
Cla016442
Citrullus lanatus
Cla016442
I
0.805
Cla021878
Citrullus lanatus
Cla021878
I
0.817
Ciclev10006961m.g
Citrus clementina
Ciclev10006961m.g
I
0.827
orange1.1g041626m.g
Citrus sinensis
orange1.1g041626m.g
I
0.827
Cucsa.255130
Cucumis sativus
Cucsa.255130
I
0.817
Cucsa.313240
Cucumis sativus
Cucsa.313240
I
0.805
Cucsa.321760
Cucumis sativus
Cucsa.321760
I
0.769
Thhalv10015420m.g
Eutrema salsugineum
Thhalv10015420m.g
I
0.779
Thhalv10017870m.g
Eutrema salsugineum
Thhalv10017870m.g
I
0.827
Thhalv10021992m.g
Eutrema salsugineum
Thhalv10021992m.g
I
0.827
gene08240-v1.0-hybrid
Fragaria vesca
gene08240-v1.0-hybrid
I
0.827
GLYMA07G16290
Glycine max
GLYMA07G16290
I
0.757
GLYMA11G34285
Glycine max
GLYMA11G34285
I
0.769
GLYMA12G35930
Glycine max
GLYMA12G35930
I
0.825
GLYMA13G34450
Glycine max
GLYMA13G34450
I
0.825
Gorai.002G256500
Gossypium raimondii
Gorai.002G256500
N
0.803
Gorai.005G047800
Gossypium raimondii
Gorai.005G047800
I
0.827
Gorai.006G247700
Gossypium raimondii
Gorai.006G247700
I
0.827
Gorai.008G226800
Gossypium raimondii
Gorai.008G226800
I
0.779
Gorai.012G106300
Gossypium raimondii
Gorai.012G106300
I
0.779
MLOC_76482
Hordeum vulgare
MLOC_76482
I
0.779
LPERR04G01660
Leersia perrieri
LPERR04G01660
I
0.805
LPERR05G08090
Leersia perrieri
LPERR05G08090
I
0.779
Lus10000705.g
Linum usitatissimum
Lus10000705.g
I
0.767
Lus10021213.g
Linum usitatissimum
Lus10021213.g
I
0.757
Lus10022204.g
Linum usitatissimum
Lus10022204.g
I
0.757
Lus10022206.g
Linum usitatissimum
Lus10022206.g
I
0.817
Lus10024875.g
Linum usitatissimum
Lus10024875.g
I
0.767
LjSGA_038753.2
Lotus japonicus
LjSGA_038753.2
I
0.769
MDP0000225209
Malus domestica
MDP0000225209
I
0.827
cassava14614.m1
Manihot esculenta
cassava14614.m1
I
0.779
cassava22028.m1
Manihot esculenta
cassava22028.m1
I
0.769
cassava3359.m1
Manihot esculenta
cassava3359.m1
I
0.827
cassava40050.m1
Manihot esculenta
cassava40050.m1
I
0.827
cassava4410.m1
Manihot esculenta
cassava4410.m1
N
0.803
MTR_1g070265
Medicago truncatula
MTR_1g070265
I
0.779
mg013419m
Mimulus guttatus
mg013419m
I
0.777
mgf024356m
Mimulus guttatus
mgf024356m
I
0.757
GSMUA_Achr7G26850_001
Musa acuminata
GSMUA_Achr7G26850_001
I
0.779
OBART04G02370
Oryza barthii
OBART04G02370
I
0.805
OBART05G10090
Oryza barthii
OBART05G10090
I
0.779
OBART11G23770
Oryza barthii
OBART11G23770
I
0.827
OB02G10110
Oryza brachyantha
OB02G10110
I
0.769
OB02G44430
Oryza brachyantha
OB02G44430
I
0.766
OB04G12040
Oryza brachyantha
OB04G12040
I
0.805
OB05G18710
Oryza brachyantha
OB05G18710
I
0.779
ORGLA05G0088100
Oryza glaberrima
ORGLA05G0088100
I
0.779
OGLUM04G02100
Oryza glumaepatula
OGLUM04G02100
I
0.805
OGLUM05G10360
Oryza glumaepatula
OGLUM05G10360
I
0.779
OGLUM11G22950
Oryza glumaepatula
OGLUM11G22950
I
0.827
BGIOSGA015610
Oryza indica
BGIOSGA015610
I
0.805
BGIOSGA018378
Oryza indica
BGIOSGA018378
I
0.779
BGIOSGA033510
Oryza indica
BGIOSGA033510
I
0.827
OLONG_005038
Oryza longistaminata
OLONG_005038
I
0.827
OLONG_022667
Oryza longistaminata
OLONG_022667
I
0.805
OLONG_023754
Oryza longistaminata
OLONG_023754
I
0.779
OMERI04G02610
Oryza meridionalis
OMERI04G02610
I
0.805
OMERI07G13080
Oryza meridionalis
OMERI07G13080
I
0.827
ONIVA04G01910
Oryza nivara
ONIVA04G01910
I
0.805
ONIVA06G26970
Oryza nivara
ONIVA06G26970
I
0.779
ONIVA11G23290
Oryza nivara
ONIVA11G23290
I
0.827
OPUNC05G08760
Oryza punctata
OPUNC05G08760
I
0.779
OPUNC11G05640
Oryza punctata
OPUNC11G05640
I
0.769
ORUFI04G03150
Oryza rufipogon
ORUFI04G03150
I
0.805
ORUFI05G10920
Oryza rufipogon
ORUFI05G10920
I
0.779
ORUFI11G25670
Oryza rufipogon
ORUFI11G25670
I
0.827
OS04G0168100
Oryza sativa
OS04G0168100
I
0.805
OS05G0286100
Oryza sativa
OS05G0286100
I
0.779
OS11G0707300
Oryza sativa
OS11G0707300
I
0.827
Pavir.Aa03593
Panicum virgatum
Pavir.Aa03593
I
0.779
Pavir.Ab00024
Panicum virgatum
Pavir.Ab00024
I
0.779
Pavir.Ab03315
Panicum virgatum
Pavir.Ab03315
I
0.766
Pavir.Ba02387
Panicum virgatum
Pavir.Ba02387
I
0.757
Pavir.Bb00955
Panicum virgatum
Pavir.Bb00955
I
0.757
Pavir.Gb02516
Panicum virgatum
Pavir.Gb02516
I
0.805
Pavir.J31403
Panicum virgatum
Pavir.J31403
I
0.805
PDK_20s1313421g001
Phoenix dactylifera
PDK_20s1313421g001
I
0.827
PDK_20s1360411g001
Phoenix dactylifera
PDK_20s1360411g001
I
0.827
e_gw1.14.264.1
Physcomitrella patens
e_gw1.14.264.1
I
0.766
e_gw1.1.457.1
Physcomitrella patens
e_gw1.1.457.1
I
0.776
e_gw1.186.49.1
Physcomitrella patens
e_gw1.186.49.1
I
0.766
e_gw1.6.268.1
Physcomitrella patens
e_gw1.6.268.1
I
0.776
POPTR_0002s04260
Populus trichocarpa
POPTR_0002s04260
I
0.827
POPTR_0008s16390
Populus trichocarpa
POPTR_0008s16390
I
0.817
POPTR_0010s08530
Populus trichocarpa
POPTR_0010s08530
I
0.827
POPTR_0016s10480
Populus trichocarpa
POPTR_0016s10480
I
0.805
Pm002649
Prunus mume
Pm002649
N
0.794
Pm009420
Prunus mume
Pm009420
I
0.827
PRUPE_ppa015007mg
Prunus persica
PRUPE_ppa015007mg
I
0.827
28345.m000111
Ricinus communis
28345.m000111
N
0.803
29603.m000536
Ricinus communis
29603.m000536
I
0.827
SapurV1A.0006s1030
Salix purpurea
SapurV1A.0006s1030
I
0.827
SapurV1A.0007s0790
Salix purpurea
SapurV1A.0007s0790
I
0.827
SapurV1A.0007s0800
Salix purpurea
SapurV1A.0007s0800
I
0.757
SapurV1A.0292s0190
Salix purpurea
SapurV1A.0292s0190
I
0.757
SapurV1A.0292s0200
Salix purpurea
SapurV1A.0292s0200
I
0.827
SapurV1A.0378s0150
Salix purpurea
SapurV1A.0378s0150
I
0.779
Si011797m.g
Setaria italica
Si011797m.g
I
0.815
Si019050m.g
Setaria italica
Si019050m.g
I
0.779
Si019563m.g
Setaria italica
Si019563m.g
I
0.766
Si024070m.g
Setaria italica
Si024070m.g
I
0.827
Si032478m.g
Setaria italica
Si032478m.g
I
0.757
Solyc06g053720.1
Solanum lycopersicum
Solyc06g053720.1
I
0.827
Solyc09g089590.1
Solanum lycopersicum
Solyc09g089590.1
I
0.827
PGSC0003DMG400017271
Solanum tuberosum
PGSC0003DMG400017271
I
0.827
PGSC0003DMG400040225
Solanum tuberosum
PGSC0003DMG400040225
I
0.827
Sb02g009930
Sorghum bicolor
Sb02g009930
I
0.757
Sb04g037590
Sorghum bicolor
Sb04g037590
I
0.766
Sb06g001730
Sorghum bicolor
Sb06g001730
I
0.805
TCM_021875
Theobroma cacao
TCM_021875
I
0.779
TCM_021876
Theobroma cacao
TCM_021876
N
0.803
Traes_1AL_80D0BD0DC
Triticum aestivum
Traes_1AL_80D0BD0DC
I
0.779
Traes_1BL_4026DC5011
Triticum aestivum
Traes_1BL_4026DC5011
I
0.779
Traes_2AS_099955797
Triticum aestivum
Traes_2AS_099955797
I
0.757
Traes_2BS_0544D9D4B
Triticum aestivum
Traes_2BS_0544D9D4B
I
0.757
Traes_2DS_035AA95E3
Triticum aestivum
Traes_2DS_035AA95E3
I
0.757
TRIUR3_03721
Triticum urartu
TRIUR3_03721
I
0.827
TRIUR3_04794
Triticum urartu
TRIUR3_04794
I
0.779
TRIUR3_25222
Triticum urartu
TRIUR3_25222
I
0.757
VIT_05s0049g00070
Vitis vinifera
VIT_05s0049g00070
I
0.827
VIT_05s0049g00080
Vitis vinifera
VIT_05s0049g00080
I
0.827
GRMZM2G000126
Zea mays
GRMZM2G000126
I
0.817
GRMZM2G137736
Zea mays
GRMZM2G137736
I
0.805
GRMZM2G344974
Zea mays
GRMZM2G344974
I
0.766
GRMZM2G409452
Zea mays
GRMZM2G409452
I
0.757
GRMZM2G443109
Zea mays
GRMZM2G443109
I
0.757