Bo8g106710 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo8g106710 T081782_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IDD1
M06824_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTWBYD
HRVWAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a 		0.803 0.907
IDD1
M06825_2.00 		Arabidopsis thaliana
WDTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAHW		 Dap-seq
OMalley et al.(2016)
At5g66730_col 		0.803 0.907
IDD4
M06809_2.00 		Arabidopsis thaliana
WWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWW		 Dap-seq
OMalley et al.(2016)
IDD4_col_a 		0.770 0.930
MGP
M06795_2.00 		Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAWHDND		 Dap-seq
OMalley et al.(2016)
MGP_col_a 		0.770 0.884
MGP
M06796_2.00 		Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHNN		 Dap-seq
OMalley et al.(2016)
MGP_colamp_a 		0.770 0.884
NUC
M06822_2.00 		Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD
HRVWARAMGACAAAANNNNN		 Dap-seq
OMalley et al.(2016)
NUC_col_a 		0.770 0.884
NUC
M06823_2.00 		Arabidopsis thaliana
NDTTTTGTCGTYTWNYD
HRNWARACGACAAAAHN		 Dap-seq
OMalley et al.(2016)
NUC_colamp_a 		0.770 0.884
IDD7
M06803_2.00 		Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHHN		 Dap-seq
OMalley et al.(2016)
IDD7_col_a 		0.770 0.837
AT1G14580
M06797_2.00 		Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWWNNN		 Dap-seq
OMalley et al.(2016)
At1g14580_col_a 		0.765 0.907
AT1G14580
M06798_2.00 		Arabidopsis thaliana
NNTTTTGTCKTTTWSYD
HRSWAAAMGACAAAANN		 Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a 		0.765 0.907
IDD5
M06807_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTTSYD
HRSAAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
IDD5_colamp_a 		0.765 0.860
IDD5
M06808_2.00 		Arabidopsis thaliana
WTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAW		 Dap-seq
OMalley et al.(2016)
IDD5_col 		0.765 0.860
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g106710.1 C2H2 ZF 157 178
Bo8g106710.1 C2H2 ZF 177 203

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

504 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28180.m000391 Ricinus communis 28180.m000391 N
evm.TU.supercontig_103.82 Carica papaya evm.TU.supercontig_103.82 N
evm.TU.supercontig_173.23 Carica papaya evm.TU.supercontig_173.23 N
evm.TU.supercontig_173.25 Carica papaya evm.TU.supercontig_173.25 N
evm.TU.supercontig_173.29 Carica papaya evm.TU.supercontig_173.29 N
evm.TU.supercontig_173.32 Carica papaya evm.TU.supercontig_173.32 N
evm.TU.supercontig_173.35 Carica papaya evm.TU.supercontig_173.35 N