CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra018638
(
Brassica rapa
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Bra018638
T081925_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra018638.1-P
C2H2 ZF
265
286
FSCGKCGKALAVKGDWRTHEKN
Bra018638.1-P
C2H2 ZF
285
311
KNCGKLWYCTCGSDFKHKRSLKDHIKS
Links
Other
C2H2 ZF
family TFs
Other
Brassica rapa
TFs
125 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo5g008880
Brassica oleracea
Bo5g008880
N
0.827
Bo8g112550
Brassica oleracea
Bo8g112550
N
0.827
Bra031621
Brassica rapa
Bra031621
N
0.827
WIP3
Arabidopsis thaliana
AT1G08290
N
0.817
WIP3
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1000684
N
0.817
Cagra.4395s0018
Capsella grandiflora
Cagra.4395s0018
N
0.817
Carubv10009617m.g
Capsella rubella
Carubv10009617m.g
N
0.817
Thhalv10008125m.g
Eutrema salsugineum
Thhalv10008125m.g
N
0.817
Bostr.25219s0116
Boechera stricta
Bostr.25219s0116
N
0.811
mgf022981m
Mimulus guttatus
mgf022981m
N
0.806
TT1
Arabidopsis lyrata
fgenesh2_kg.1__3606__AT1G34790.1
N
0.800
Bostr.1040s0072
Boechera stricta
Bostr.1040s0072
N
0.800
Cagra.0764s0003
Capsella grandiflora
Cagra.0764s0003
N
0.800
Carubv10012266m.g
Capsella rubella
Carubv10012266m.g
N
0.800
Lus10004887.g
Linum usitatissimum
Lus10004887.g
N
0.799
Lus10020597.g
Linum usitatissimum
Lus10020597.g
N
0.799
PGSC0003DMG400007112
Solanum tuberosum
PGSC0003DMG400007112
N
0.793
Aquca_004_00109
Aquilegia coerulea
Aquca_004_00109
N
0.793
Aquca_006_00227
Aquilegia coerulea
Aquca_006_00227
N
0.793
Aquca_040_00077
Aquilegia coerulea
Aquca_040_00077
N
0.793
POPTR_0002s09840
Populus trichocarpa
POPTR_0002s09840
N
0.792
Eucgr.F00336
Eucalyptus grandis
Eucgr.F00336
N
0.792
GLYMA13G01720
Glycine max
GLYMA13G01720
N
0.782
GLYMA14G35140
Glycine max
GLYMA14G35140
N
0.782
PGSC0003DMG400030803
Solanum tuberosum
PGSC0003DMG400030803
N
0.782
Solyc04g074320.1
Solanum lycopersicum
Solyc04g074320.1
N
0.782
TCM_034881
Theobroma cacao
TCM_034881
N
0.782
TT1
Vitis vinifera
VIT_18s0001g05860
N
0.782
Ca_27078
Cicer arietinum
Ca_27078
N
0.782
Cla000184
Citrullus lanatus
Cla000184
N
0.782
29908.m006047
Ricinus communis
29908.m006047
N
0.782
cassava44390.m1
Manihot esculenta
cassava44390.m1
N
0.782
Cucsa.199850
Cucumis sativus
Cucsa.199850
N
0.782
Ciclev10003648m.g
Citrus clementina
Ciclev10003648m.g
N
0.782
Gorai.010G039600
Gossypium raimondii
Gorai.010G039600
N
0.782
Lus10033454.g
Linum usitatissimum
Lus10033454.g
N
0.782
orange1.1g037179m.g
Citrus sinensis
orange1.1g037179m.g
N
0.782
LjSGA_032817.1
Lotus japonicus
LjSGA_032817.1
N
0.782
MDP0000573922
Malus domestica
MDP0000573922
N
0.780
GSMUA_Achr4G01560_001
Musa acuminata
GSMUA_Achr4G01560_001
N
0.779
PGSC0003DMG400006808
Solanum tuberosum
PGSC0003DMG400006808
N
0.779
Solyc01g087050.2
Solanum lycopersicum
Solyc01g087050.2
N
0.779
Lus10029525.g
Linum usitatissimum
Lus10029525.g
N
0.779
Lus10039613.g
Linum usitatissimum
Lus10039613.g
N
0.779
GLYMA11G19060
Glycine max
GLYMA11G19060
N
0.775
GLYMA12G09400
Glycine max
GLYMA12G09400
N
0.775
GLYMA12G30930
Glycine max
GLYMA12G30930
N
0.775
GLYMA13G39370
Glycine max
GLYMA13G39370
N
0.775
POPTR_0004s19460
Populus trichocarpa
POPTR_0004s19460
N
0.775
POPTR_0009s14590
Populus trichocarpa
POPTR_0009s14590
N
0.775
PRUPE_ppa023619mg
Prunus persica
PRUPE_ppa023619mg
N
0.775
TCM_041441
Theobroma cacao
TCM_041441
N
0.775
WIP3
Vitis vinifera
VIT_06s0080g00270
N
0.775
Ca_07051
Cicer arietinum
Ca_07051
N
0.775
Ca_16482
Cicer arietinum
Ca_16482
N
0.775
Pm001374
Prunus mume
Pm001374
N
0.775
30055.m001542
Ricinus communis
30055.m001542
N
0.775
cassava13451.valid.m1
Manihot esculenta
cassava13451.valid.m1
N
0.775
Cucsa.065460
Cucumis sativus
Cucsa.065460
N
0.775
Ciclev10028757m.g
Citrus clementina
Ciclev10028757m.g
N
0.775
Eucgr.B03870
Eucalyptus grandis
Eucgr.B03870
N
0.775
evm.TU.contig_35924
Carica papaya
evm.TU.contig_35924
N
0.775
Gorai.001G121700
Gossypium raimondii
Gorai.001G121700
N
0.775
Gorai.006G111400
Gossypium raimondii
Gorai.006G111400
N
0.775
MDP0000131949
Malus domestica
MDP0000131949
N
0.775
MDP0000300013
Malus domestica
MDP0000300013
N
0.775
orange1.1g039549m.g
Citrus sinensis
orange1.1g039549m.g
N
0.775
SapurV1A.0080s0360
Salix purpurea
SapurV1A.0080s0360
N
0.775
SapurV1A.0219s0040
Salix purpurea
SapurV1A.0219s0040
N
0.775
GLYMA08G16390
Glycine max
GLYMA08G16390
N
0.769
GLYMA12G36660
Glycine max
GLYMA12G36660
N
0.769
GLYMA13G27371
Glycine max
GLYMA13G27371
N
0.769
GLYMA15G42870
Glycine max
GLYMA15G42870
N
0.769
GSMUA_Achr3G03850_001
Musa acuminata
GSMUA_Achr3G03850_001
N
0.769
GSMUA_Achr9G12600_001
Musa acuminata
GSMUA_Achr9G12600_001
N
0.769
POPTR_0001s27490
Populus trichocarpa
POPTR_0001s27490
N
0.769
POPTR_0009s06700
Populus trichocarpa
POPTR_0009s06700
N
0.769
TCM_005892
Theobroma cacao
TCM_005892
N
0.769
Cla015481
Citrullus lanatus
Cla015481
N
0.769
30061.m000294
Ricinus communis
30061.m000294
N
0.769
cassava16214.m1
Manihot esculenta
cassava16214.m1
N
0.769
cassava39829.m1
Manihot esculenta
cassava39829.m1
N
0.769
Cucsa.050260
Cucumis sativus
Cucsa.050260
N
0.769
mgf022319m
Mimulus guttatus
mgf022319m
N
0.769
gene22042-v1.0-hybrid
Fragaria vesca
gene22042-v1.0-hybrid
N
0.769
Gorai.004G037000
Gossypium raimondii
Gorai.004G037000
N
0.769
Gorai.004G065400
Gossypium raimondii
Gorai.004G065400
N
0.769
Gorai.007G177300
Gossypium raimondii
Gorai.007G177300
N
0.769
PK05257.1
Cannabis sativa
PK05257.1
N
0.769
chr3.CM1144.10.nc
Lotus japonicus
chr3.CM1144.10.nc
N
0.769
POPTR_0001s05630
Populus trichocarpa
POPTR_0001s05630
N
0.765
orange1.1g037234m.g
Citrus sinensis
orange1.1g037234m.g
N
0.764
Bo5g081360
Brassica oleracea
Bo5g081360
N
0.763
MDP0000144266
Malus domestica
MDP0000144266
N
0.763
GSMUA_Achr8G25650_001
Musa acuminata
GSMUA_Achr8G25650_001
N
0.762
MDP0000142494
Malus domestica
MDP0000142494
N
0.761
cassava34009.m1
Manihot esculenta
cassava34009.m1
N
0.760
BGIOSGA031001
Oryza indica
BGIOSGA031001
N
0.759
BRADI3G39820
Brachypodium distachyon
BRADI3G39820
N
0.759
GRMZM2G071101
Zea mays
GRMZM2G071101
N
0.759
GRMZM2G445684
Zea mays
GRMZM2G445684
N
0.759
LPERR08G16620
Leersia perrieri
LPERR08G16620
N
0.759
LPERR09G10700
Leersia perrieri
LPERR09G10700
N
0.759
OB08G26650
Oryza brachyantha
OB08G26650
N
0.759
OBART08G19670
Oryza barthii
OBART08G19670
N
0.759
OGLUM08G20830
Oryza glumaepatula
OGLUM08G20830
N
0.759
OGLUM09G15150
Oryza glumaepatula
OGLUM09G15150
N
0.759
OMERI08G16450
Oryza meridionalis
OMERI08G16450
N
0.759
OMERI09G11270
Oryza meridionalis
OMERI09G11270
N
0.759
ONIVA08G21960
Oryza nivara
ONIVA08G21960
N
0.759
ONIVA09G15100
Oryza nivara
ONIVA09G15100
N
0.759
OPUNC08G17810
Oryza punctata
OPUNC08G17810
N
0.759
OPUNC09G12930
Oryza punctata
OPUNC09G12930
N
0.759
ORGLA08G0173000
Oryza glaberrima
ORGLA08G0173000
N
0.759
ORGLA09G0111700
Oryza glaberrima
ORGLA09G0111700
N
0.759
ORUFI09G15680
Oryza rufipogon
ORUFI09G15680
N
0.759
OS08G0504000
Oryza sativa
OS08G0504000
N
0.759
OS09G0485600
Oryza sativa
OS09G0485600
N
0.759
Sb07g028010
Sorghum bicolor
Sb07g028010
N
0.759
Si013819m.g
Setaria italica
Si013819m.g
N
0.759
evm.TU.contig_31438
Carica papaya
evm.TU.contig_31438
N
0.759
Pavir.Fa00506
Panicum virgatum
Pavir.Fa00506
N
0.759
Pavir.Fb01879
Panicum virgatum
Pavir.Fb01879
N
0.759
SapurV1A.0445s0120
Salix purpurea
SapurV1A.0445s0120
N
0.759
SapurV1A.0445s0140
Salix purpurea
SapurV1A.0445s0140
N
0.759