CRE25436 (Caenorhabditis remanei)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 CRE25436 T085069_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lin-48
M00614_2.00 		Caenorhabditis elegans
HCCGTTAB
VTAACGGD		 PBM
Narasimhan et al.(2015)
pTH9155 		0.827 1.000
ovo
M03669_2.00 		Drosophila melanogaster
DNMCCGTTA
TAACGGKNH		 SELEX
Nitta et al.(2015)
ovo_1 		0.790 0.826
ovo
M06064_2.00 		Drosophila melanogaster
CHGTTAHW
WDTAACDG		 B1H
Zhu et al.(2011)
ovo_FlyReg_FBgn0003028 		0.790 0.826
ovo
M06065_2.00 		Drosophila melanogaster
RGTHCCGTTAT
ATAACGGDACY		 B1H
Zhu et al.(2011)
ovo_SANGER_5_FBgn0003028 		0.790 0.826
ovo
M06066_2.00 		Drosophila melanogaster
DDTMCCGTTABNYN
NRNVTAACGGKAHH		 B1H
Zhu et al.(2011)
ovo_SOLEXA_5_FBgn0003028 		0.790 0.826
ovo
M02671_2.00 		Drosophila melanogaster
DCNGTTWSD
HSWAACNGH		 SELEX
Mathelier et al.(2014)
MA0126.1 		0.790 0.826
ovo
M09662_2.00 		Drosophila melanogaster
DCNGTTAMWNNDV
BHNNWKTAACNGH		 Misc
Kulakovskiy et al.(2009)
ovo 		0.790 0.826
ovo
M10373_2.00 		Drosophila melanogaster
NNNDCNGTTWSDDNN
NNHHSWAACNGHNNN		 Transfac
Matys et al.(2006)
I$OVO_01 		0.790 0.826
ovo
M10374_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$OVO_Q6 		0.790 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CRE25436 C2H2 ZF 137 159
CRE25436 C2H2 ZF 165 187
CRE25436 C2H2 ZF 193 216

Links

Other C2H2 ZF family TFs
Other Caenorhabditis remanei TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00021p00221770 Amborella trichopoda AMTR_s00021p00221770 N
Aquca_100_00036 Aquilegia coerulea Aquca_100_00036 N
ARF1 Arabidopsis lyrata fgenesh2_kg.2__468__AT1G59750.1 N
ARF1 Arabidopsis thaliana AT1G59750 N
BRADI4G17410 Brachypodium distachyon BRADI4G17410 I
Bo1g090350 Brassica oleracea Bo1g090350 N
Bo4g083590 Brassica oleracea Bo4g083590 N
Bra035427 Brassica rapa Bra035427 N
Cagra.0996s0001 Capsella grandiflora Cagra.0996s0001 N
Carubv10022415m.g Capsella rubella Carubv10022415m.g N
Cla001927 Citrullus lanatus Cla001927 N
Ciclev10000491m.g Citrus clementina Ciclev10000491m.g N
Cucsa.183410 Cucumis sativus Cucsa.183410 N
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I
Thhalv10023326m.g Eutrema salsugineum Thhalv10023326m.g N
GLYMA07G40270 Glycine max GLYMA07G40270 N
MLOC_18401 Hordeum vulgare MLOC_18401 N
LPERR01G37140 Leersia perrieri LPERR01G37140 N
Lus10024455.g Linum usitatissimum Lus10024455.g N
Lus10007440.g Linum usitatissimum Lus10007440.g N
cassava11453.m1 Manihot esculenta cassava11453.m1 N
cassava11454.m1 Manihot esculenta cassava11454.m1 N
cassava11455.m1 Manihot esculenta cassava11455.m1 N
cassava11456.m1 Manihot esculenta cassava11456.m1 N
cassava7098.valid.m1 Manihot esculenta cassava7098.valid.m1 N
cassava7099.valid.m1 Manihot esculenta cassava7099.valid.m1 N
mgf006427m Mimulus guttatus mgf006427m N
mgf024961m Mimulus guttatus mgf024961m N
GSMUA_Achr6G16450_001 Musa acuminata GSMUA_Achr6G16450_001 N
OBART12G11990 Oryza barthii OBART12G11990 N
OB01G51580 Oryza brachyantha OB01G51580 N
ORGLA12G0109100 Oryza glaberrima ORGLA12G0109100 N
OGLUM12G13560 Oryza glumaepatula OGLUM12G13560 N
BGIOSGA036199 Oryza indica BGIOSGA036199 N
OLONG_010675 Oryza longistaminata OLONG_010675 N
OLONG_019549 Oryza longistaminata OLONG_019549 N
OMERI12G08550 Oryza meridionalis OMERI12G08550 N
ONIVA12G12070 Oryza nivara ONIVA12G12070 N
ORUFI12G13110 Oryza rufipogon ORUFI12G13110 N
ARF24 Oryza sativa OS12G0479400 N
POPTR_0003s00890 Populus trichocarpa POPTR_0003s00890 N
PRUPE_ppa002394mg Prunus persica PRUPE_ppa002394mg N
29742.m001397 Ricinus communis 29742.m001397 N
29609.m000587 Ricinus communis 29609.m000587 N
SapurV1A.0225s0120 Salix purpurea SapurV1A.0225s0120 N
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I
Si025988m.g Setaria italica Si025988m.g N
Solyc01g103050.2 Solanum lycopersicum Solyc01g103050.2 N
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I
Sb05g019540 Sorghum bicolor Sb05g019540 N
TCM_027113 Theobroma cacao TCM_027113 I
TRAES3BF111600210CFD_g Triticum aestivum TRAES3BF111600210CFD_g N
TRIUR3_02890 Triticum urartu TRIUR3_02890 N