GFI1B (Cavia porcellus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCPOG00000026928 T090062_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.816 0.964
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.816 0.964
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.816 0.964
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.814 0.957
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.814 0.957
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.814 0.957
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.814 0.957
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.814 0.957
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.814 0.957
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.804 0.949
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.782 0.891
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.782 0.891
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.782 0.891
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.782 0.891
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.782 0.891
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.782 0.891
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.782 0.891
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.782 0.891
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.780 0.884
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.774 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000015353 C2H2 ZF 86 109
ENSCPOP00000015353 C2H2 ZF 115 137
ENSCPOP00000015353 C2H2 ZF 143 165
ENSCPOP00000015353 C2H2 ZF 171 193
ENSCPOP00000015353 C2H2 ZF 199 221
ENSCPOP00000015353 C2H2 ZF 227 250

Links

Other C2H2 ZF family TFs
Other Cavia porcellus TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GFI1B Procavia capensis ENSPCAG00000012329 I 0.823
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.821
GFI1B Equus caballus ENSECAG00000008127 I 0.817
GFI1B Canis familiaris ENSCAFG00000019877 I 0.816
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.816
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.816
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.816
Gfi1b Mus musculus ENSMUSG00000026815 D 0.816
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.816
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.816
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.814
GFI1B Felis catus ENSFCAG00000027147 I 0.814
GFI1B Homo sapiens ENSG00000165702 D 0.814
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.814
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.814
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.814
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.814
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.814
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.814
GFI1B Sus scrofa ENSSSCG00000005737 I 0.814
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.813
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.809
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.808
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.806
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.806
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.806
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.805
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.805
GFI1B Bos taurus ENSBTAG00000012772 I 0.804
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.804
Tal_R001363 Tyto alba Tal_R001363 I 0.804
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.801
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.801
GFI1B Gallus gallus ENSGALG00000003478 I 0.801
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.801
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.801
Aan_R008865 Calypte anna Aan_R008865 I 0.801
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.801
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.801
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.795
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.795
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.794
gfi1b Danio rerio ENSDARG00000079947 I 0.793
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.793
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.789
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.788
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.788
gfi1b Oryzias latipes ENSORLG00000014390 I 0.787
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.787
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.787
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.786
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.785
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.784
gfi1ab Danio rerio ENSDARG00000044457 I 0.784
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.784
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.784
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.784
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.784
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.784
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.784
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.784
Aan_R000889 Calypte anna Aan_R000889 I 0.784
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.784
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.784
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.784
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.784
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.784
Tal_R006464 Tyto alba Tal_R006464 I 0.784
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.784
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.783
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.782
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.782
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.782
GFI1 Bos taurus ENSBTAG00000016723 I 0.782
GFI1 Canis familiaris ENSCAFG00000020155 I 0.782
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.782
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.782
gfi1aa Danio rerio ENSDARG00000020746 I 0.782
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.782
GFI1 Equus caballus ENSECAG00000006647 I 0.782
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.782
GFI1 Felis catus ENSFCAG00000005914 I 0.782
GFI1 Homo sapiens ENSG00000162676 D 0.782
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.782
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.782
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.782
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.782
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.782
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.782
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.782
Gfi1 Mus musculus ENSMUSG00000029275 D 0.782
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.782
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.782
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.782
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.782
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.782
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.782
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.782
GFI1 Sus scrofa ENSSSCG00000006902 I 0.782
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.782
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.782
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.782
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.782
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.782
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.778
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.778
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.778
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.777
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.774
sens-2 Drosophila melanogaster FBgn0051632 D 0.774
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.774
GF15430 Drosophila ananassae FBgn0092455 I 0.774
GG10437 Drosophila erecta FBgn0102746 I 0.774
GH13715 Drosophila grimshawi FBgn0121191 I 0.774
GI23984 Drosophila mojavensis FBgn0146708 I 0.774
GL26188 Drosophila persimilis FBgn0163770 I 0.774
GM16223 Drosophila sechellia FBgn0171139 I 0.774
GJ21268 Drosophila virilis FBgn0208401 I 0.774
GK24242 Drosophila willistoni FBgn0226203 I 0.774
GE14143 Drosophila yakuba FBgn0231766 I 0.774
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.774
MDOA011065 Musca domestica MDOA011065 I 0.774
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.773
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.772
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.770
LotgiG129344 Lottia gigantea LotgiG129344 I 0.769
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.768
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.768
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.768
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.768
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.766
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.766
LotgiG83709 Lottia gigantea LotgiG83709 I 0.765
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.763
NEMVEDRAFT_v1g182742 Nematostella vectensis NEMVEDRAFT_v1g182742 I 0.758
CapteG45287 Capitella teleta CapteG45287 I 0.757