CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Klf10
(
Rattus norvegicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSRNOG00000006118
T108909_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KLF10
M04489_2.00
Homo sapiens
RMCACRCCCMYVHCACRCCCMC
GKGGGYGTGDBRKGGGYGTGKY
SELEX
Yin et al.(2017)
KLF10_eDBD_HT-SELEX
0.827
0.986
KLF10
M08246_2.00
Homo sapiens
RCCMCRCCCH
DGGGYGKGGY
ChIP-seq
Najafabadi et al.(2015b)
KLF10
0.827
0.986
KLF10
M08317_2.00
Homo sapiens
SMCMCRCCCMYNBSN
NSVNRKGGGYGKGKS
ChIP-seq
Schmitges et al.(2016)
Q13118.MEME
0.827
0.986
KLF10
M10228_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TIEG1_Q6
0.827
0.986
KLF10
M04490_2.00
Homo sapiens
RMCACRCCCMYGMCACRCCCHC
GDGGGYGTGKCRKGGGYGTGKY
SELEX
Yin et al.(2017)
KLF10_eDBD_Methyl-HT-SELEX
0.827
0.986
KLF11
M00242_2.00
Homo sapiens
MCGCCCCC
GGGGGCGK
PBM
Barrera et al.(2016)
KLF11_REF
0.775
0.855
KLF11
M04554_2.00
Homo sapiens
VMCMCRCCCMYNMCACGCCCMC
GKGGGCGTGKNRKGGGYGKGKB
SELEX
Yin et al.(2017)
KLF11_eDBD_HT-SELEX
0.775
0.855
KLF11
M10261_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FKLF_Q5
0.775
0.855
KLF11
M00241_2.00
Homo sapiens
MCGCCCMC
GKGGGCGK
PBM
Barrera et al.(2016)
KLF11_R402Q
0.775
0.855
KLF11
M04555_2.00
Homo sapiens
VMCMCRCCCHYNHCACGCCCMC
GKGGGCGTGDNRDGGGYGKGKB
SELEX
Yin et al.(2017)
KLF11_eDBD_Methyl-HT-SELEX
0.775
0.855
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000008350
C2H2 ZF
366
393
VRSHICSHPGCGKTYFKSSHLKAHVRTH
ENSRNOP00000008350
C2H2 ZF
399
423
FSCSWKGCERRFARSDELSRHRRTH
ENSRNOP00000008350
C2H2 ZF
429
451
FACPMCDRRFMRSDHLTKHARRH
ENSRNOP00000070160
C2H2 ZF
350
377
VRSHICSHPGCGKTYFKSSHLKAHVRTH
ENSRNOP00000070160
C2H2 ZF
383
407
FSCSWKGCERRFARSDELSRHRRTH
ENSRNOP00000070160
C2H2 ZF
413
435
FACPMCDRRFMRSDHLTKHARRH
Links
Other
C2H2 ZF
family TFs
Other
Rattus norvegicus
TFs
159 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
HMG-1
Pisum sativum
Q41026_PEA
D
SPPG_05251
Spizellomyces punctatus
SPPG_05251
I
HMGB5
Arabidopsis lyrata
Al_scaffold_0007_498
I
AMTR_s00029p00240750
Amborella trichopoda
AMTR_s00029p00240750
I
AMTR_s00044p00160130
Amborella trichopoda
AMTR_s00044p00160130
I
AMTR_s00171p00070550
Amborella trichopoda
AMTR_s00171p00070550
I
HMGB2
Arabidopsis thaliana
AT1G20693
I
HMGB3
Arabidopsis thaliana
AT1G20696
I
HMGB4
Arabidopsis thaliana
AT2G17560
I
HMGB1
Arabidopsis thaliana
AT3G51880
I
HMGB5
Arabidopsis thaliana
AT4G35570
I
BGIOSGA023639
Oryza indica
BGIOSGA023639
I
Bo1g006360
Brassica oleracea
Bo1g006360
I
Bo5g030580
Brassica oleracea
Bo5g030580
I
Bo7g014280
Brassica oleracea
Bo7g014280
I
Bo7g061420
Brassica oleracea
Bo7g061420
I
Bo7g101270
Brassica oleracea
Bo7g101270
I
Bo7g117500
Brassica oleracea
Bo7g117500
I
Bo8g070350
Brassica oleracea
Bo8g070350
I
Bo8g081200
Brassica oleracea
Bo8g081200
I
Bra002073
Brassica rapa
Bra002073
I
Bra011624
Brassica rapa
Bra011624
I
Bra017723
Brassica rapa
Bra017723
I
Bra025838
Brassica rapa
Bra025838
I
Bra037266
Brassica rapa
Bra037266
I
BRADI1G29730
Brachypodium distachyon
BRADI1G29730
I
BRADI4G37247
Brachypodium distachyon
BRADI4G37247
I
F775_27510
Aegilops tauschii
F775_27510
I
HMGB1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5001281
I
HMGB2
Arabidopsis lyrata
fgenesh2_kg.1__2255__AT1G20693.2
I
HMGB3
Arabidopsis lyrata
fgenesh2_kg.1__2258__AT1G20696.3
I
HMGB4
Arabidopsis lyrata
fgenesh2_kg.3__3350__AT2G17560.1
I
GLYMA01G28820
Glycine max
GLYMA01G28820
I
GLYMA03G08270
Glycine max
GLYMA03G08270
I
GLYMA04G01840
Glycine max
GLYMA04G01840
I
GLYMA06G01970
Glycine max
GLYMA06G01970
I
GLYMA09G33070
Glycine max
GLYMA09G33070
I
GLYMA10G43440
Glycine max
GLYMA10G43440
I
GLYMA16G22060
Glycine max
GLYMA16G22060
I
GLYMA20G23370
Glycine max
GLYMA20G23370
I
GRMZM2G066528
Zea mays
GRMZM2G066528
I
GRMZM2G162284
Zea mays
GRMZM2G162284
I
GRMZM5G834758
Zea mays
GRMZM5G834758
I
GSMUA_Achr10G07270_001
Musa acuminata
GSMUA_Achr10G07270_001
I
GSMUA_Achr11G07320_001
Musa acuminata
GSMUA_Achr11G07320_001
I
GSMUA_Achr2G03630_001
Musa acuminata
GSMUA_Achr2G03630_001
I
GSMUA_Achr2G11060_001
Musa acuminata
GSMUA_Achr2G11060_001
I
GSMUA_Achr4G25860_001
Musa acuminata
GSMUA_Achr4G25860_001
I
GSMUA_Achr5G11630_001
Musa acuminata
GSMUA_Achr5G11630_001
I
GSMUA_Achr9G21200_001
Musa acuminata
GSMUA_Achr9G21200_001
I
GSMUA_AchrUn_randomG22010_001
Musa acuminata
GSMUA_AchrUn_randomG22010_001
I
LPERR06G23570
Leersia perrieri
LPERR06G23570
I
LPERR09G14820
Leersia perrieri
LPERR09G14820
I
MLOC_78556
Hordeum vulgare
MLOC_78556
I
MTR_1g115220
Medicago truncatula
MTR_1g115220
I
MTR_3g115580
Medicago truncatula
MTR_3g115580
I
MTR_5g024180
Medicago truncatula
MTR_5g024180
I
MTR_7g068280
Medicago truncatula
MTR_7g068280
I
MTR_7g082820
Medicago truncatula
MTR_7g082820
I
MTR_8g073345
Medicago truncatula
MTR_8g073345
I
OB01G34910
Oryza brachyantha
OB01G34910
I
OB06G35870
Oryza brachyantha
OB06G35870
I
OB09G25530
Oryza brachyantha
OB09G25530
I
OBART06G28090
Oryza barthii
OBART06G28090
I
OGLUM06G29480
Oryza glumaepatula
OGLUM06G29480
I
OLONG_007465
Oryza longistaminata
OLONG_007465
I
OMERI06G28030
Oryza meridionalis
OMERI06G28030
I
OMERI09G14100
Oryza meridionalis
OMERI09G14100
I
ONIVA06G31070
Oryza nivara
ONIVA06G31070
I
ONIVA09G20030
Oryza nivara
ONIVA09G20030
I
OPUNC06G25640
Oryza punctata
OPUNC06G25640
I
ORGLA06G0238300
Oryza glaberrima
ORGLA06G0238300
I
ORGLA09G0150800
Oryza glaberrima
ORGLA09G0150800
I
ORUFI06G30030
Oryza rufipogon
ORUFI06G30030
I
ORUFI09G20440
Oryza rufipogon
ORUFI09G20440
I
OS06G0728000
Oryza sativa
OS06G0728000
I
OS09G0551600
Oryza sativa
OS09G0551600
I
PGSC0003DMG400001567
Solanum tuberosum
PGSC0003DMG400001567
I
PGSC0003DMG400008501
Solanum tuberosum
PGSC0003DMG400008501
I
PGSC0003DMG400018685
Solanum tuberosum
PGSC0003DMG400018685
I
POPTR_0002s01000
Populus trichocarpa
POPTR_0002s01000
I
POPTR_0005s10440
Populus trichocarpa
POPTR_0005s10440
I
XM_002306945.1
Populus trichocarpa
POPTR_0005s27390
I
POPTR_0008s06730
Populus trichocarpa
POPTR_0008s06730
I
POPTR_0010s19720
Populus trichocarpa
POPTR_0010s19720
I
PRUPE_ppa007518mg
Prunus persica
PRUPE_ppa007518mg
I
PRUPE_ppa011596mg
Prunus persica
PRUPE_ppa011596mg
I
PRUPE_ppa012424mg
Prunus persica
PRUPE_ppa012424mg
I
PRUPE_ppa012972mg
Prunus persica
PRUPE_ppa012972mg
I
Sb02g032140
Sorghum bicolor
Sb02g032140
I
Sb10g030910
Sorghum bicolor
Sb10g030910
I
SELMODRAFT_117986
Selaginella moellendorffii
SELMODRAFT_117986
I
SELMODRAFT_175895
Selaginella moellendorffii
SELMODRAFT_175895
I
SELMODRAFT_18312
Selaginella moellendorffii
SELMODRAFT_18312
I
SELMODRAFT_18313
Selaginella moellendorffii
SELMODRAFT_18313
I
SELMODRAFT_38818
Selaginella moellendorffii
SELMODRAFT_38818
I
SELMODRAFT_75453
Selaginella moellendorffii
SELMODRAFT_75453
I
Si007288m.g
Setaria italica
Si007288m.g
I
Si031512m.g
Setaria italica
Si031512m.g
I
Solyc02g082700.2
Solanum lycopersicum
Solyc02g082700.2
I
TCM_000068
Theobroma cacao
TCM_000068
I
TCM_021706
Theobroma cacao
TCM_021706
I
TCM_034406
Theobroma cacao
TCM_034406
I
TCM_042534
Theobroma cacao
TCM_042534
I
Traes_5AL_D1358AF6E
Triticum aestivum
Traes_5AL_D1358AF6E
I
Traes_5BL_9CC98DD38
Triticum aestivum
Traes_5BL_9CC98DD38
I
Traes_5DL_DD9491112
Triticum aestivum
Traes_5DL_DD9491112
I
TRIUR3_13577
Triticum urartu
TRIUR3_13577
I
TRIUR3_27273
Triticum urartu
TRIUR3_27273
I
VIT_04s0044g00110
Vitis vinifera
VIT_04s0044g00110
I
HMGB1
Vitis vinifera
VIT_08s0007g02200
I
HMGB6
Vitis vinifera
VIT_10s0071g00870
I
VIT_13s0067g00640
Vitis vinifera
VIT_13s0067g00640
I
VIT_18s0122g01190
Vitis vinifera
VIT_18s0122g01190
I
Ca_04825
Cicer arietinum
Ca_04825
I
Ca_05351
Cicer arietinum
Ca_05351
I
Ca_09896
Cicer arietinum
Ca_09896
I
Ca_10725
Cicer arietinum
Ca_10725
I
Ca_19340
Cicer arietinum
Ca_19340
I
Cla009093
Citrullus lanatus
Cla009093
I
Cla018386
Citrullus lanatus
Cla018386
I
Cla023817
Citrullus lanatus
Cla023817
I
Pm002934
Prunus mume
Pm002934
I
Pm018913
Prunus mume
Pm018913
I
Pm026798
Prunus mume
Pm026798
I
29600.m000548
Ricinus communis
29600.m000548
I
29669.m000844
Ricinus communis
29669.m000844
I
29701.m000600
Ricinus communis
29701.m000600
I
30170.m014386
Ricinus communis
30170.m014386
I
cassava17389.m1
Manihot esculenta
cassava17389.m1
I
cassava18624.valid.m1
Manihot esculenta
cassava18624.valid.m1
I
cassava18625.valid.m1
Manihot esculenta
cassava18625.valid.m1
I
cassava18626.valid.m1
Manihot esculenta
cassava18626.valid.m1
I
cassava23716.valid.m1
Manihot esculenta
cassava23716.valid.m1
I
cassava24859.valid.m1
Manihot esculenta
cassava24859.valid.m1
I
cassava35948.valid.m1
Manihot esculenta
cassava35948.valid.m1
I
cassava42371.valid.m1
Manihot esculenta
cassava42371.valid.m1
I
cassava42372.valid.m1
Manihot esculenta
cassava42372.valid.m1
I
cassava42373.valid.m1
Manihot esculenta
cassava42373.valid.m1
I
cassava44923.m1
Manihot esculenta
cassava44923.m1
I
Cucsa.067200
Cucumis sativus
Cucsa.067200
I
Cucsa.272190
Cucumis sativus
Cucsa.272190
I
Cucsa.323100
Cucumis sativus
Cucsa.323100
I
estExt_fgenesh1_pm.C_880025
Physcomitrella patens
estExt_fgenesh1_pm.C_880025
I
gw1.106.59.1
Physcomitrella patens
gw1.106.59.1
I
gw1.106.60.1
Physcomitrella patens
gw1.106.60.1
I
mgf000913m
Mimulus guttatus
mgf000913m
I
mgf006113m
Mimulus guttatus
mgf006113m
I
mgf008076m
Mimulus guttatus
mgf008076m
I
mgf009330m
Mimulus guttatus
mgf009330m
I
mgf014518m
Mimulus guttatus
mgf014518m
I
mgf016363m
Mimulus guttatus
mgf016363m
I
mgf016608m
Mimulus guttatus
mgf016608m
I
Aquca_004_00335
Aquilegia coerulea
Aquca_004_00335
I
Aquca_007_00897
Aquilegia coerulea
Aquca_007_00897
I
Aquca_015_00344
Aquilegia coerulea
Aquca_015_00344
I
Aquca_045_00054
Aquilegia coerulea
Aquca_045_00054
I
Bostr.18351s0219
Boechera stricta
Bostr.18351s0219
I
Bostr.6864s0060
Boechera stricta
Bostr.6864s0060
I
Bostr.7128s0662
Boechera stricta
Bostr.7128s0662
I
Bostr.7128s0663
Boechera stricta
Bostr.7128s0663
I
Bostr.7867s1415
Boechera stricta
Bostr.7867s1415
I
Cagra.1043s0022
Capsella grandiflora
Cagra.1043s0022
I
Cagra.1891s0017
Capsella grandiflora
Cagra.1891s0017
I
Cagra.2350s0098
Capsella grandiflora
Cagra.2350s0098
I
Cagra.6160s0027
Capsella grandiflora
Cagra.6160s0027
I
Cagra.6160s0028
Capsella grandiflora
Cagra.6160s0028
I
Carubv10005973m.g
Capsella rubella
Carubv10005973m.g
I
Carubv10010586m.g
Capsella rubella
Carubv10010586m.g
I
Carubv10012681m.g
Capsella rubella
Carubv10012681m.g
I
Carubv10014808m.g
Capsella rubella
Carubv10014808m.g
I
Carubv10018109m.g
Capsella rubella
Carubv10018109m.g
I
Ciclev10002782m.g
Citrus clementina
Ciclev10002782m.g
I
Ciclev10012868m.g
Citrus clementina
Ciclev10012868m.g
I
Ciclev10026715m.g
Citrus clementina
Ciclev10026715m.g
I
Ciclev10032930m.g
Citrus clementina
Ciclev10032930m.g
I
Eucgr.A00506
Eucalyptus grandis
Eucgr.A00506
I
Eucgr.F03571
Eucalyptus grandis
Eucgr.F03571
I
Eucgr.J02535
Eucalyptus grandis
Eucgr.J02535
I
evm.TU.supercontig_11.167
Carica papaya
evm.TU.supercontig_11.167
I
evm.TU.supercontig_19.183
Carica papaya
evm.TU.supercontig_19.183
I
evm.TU.supercontig_26.174
Carica papaya
evm.TU.supercontig_26.174
I
evm.TU.supercontig_365.4
Carica papaya
evm.TU.supercontig_365.4
I
gene13043-v1.0-hybrid
Fragaria vesca
gene13043-v1.0-hybrid
I
gene18862-v1.0-hybrid
Fragaria vesca
gene18862-v1.0-hybrid
I
gene20487-v1.0-hybrid
Fragaria vesca
gene20487-v1.0-hybrid
I
Gorai.001G198900
Gossypium raimondii
Gorai.001G198900
I
Gorai.002G115100
Gossypium raimondii
Gorai.002G115100
I
Gorai.002G263800
Gossypium raimondii
Gorai.002G263800
I
Gorai.005G114500
Gossypium raimondii
Gorai.005G114500
I
Gorai.006G181900
Gossypium raimondii
Gorai.006G181900
I
Gorai.009G186800
Gossypium raimondii
Gorai.009G186800
I
Gorai.013G018500
Gossypium raimondii
Gorai.013G018500
I
Lus10012252.g
Linum usitatissimum
Lus10012252.g
I
Lus10016025.g
Linum usitatissimum
Lus10016025.g
I
Lus10028298.g
Linum usitatissimum
Lus10028298.g
I
Lus10035511.g
Linum usitatissimum
Lus10035511.g
I
Lus10040192.g
Linum usitatissimum
Lus10040192.g
I
MDP0000242568
Malus domestica
MDP0000242568
I
MDP0000275042
Malus domestica
MDP0000275042
I
MDP0000362980
Malus domestica
MDP0000362980
I
MDP0000607529
Malus domestica
MDP0000607529
I
MDP0000757111
Malus domestica
MDP0000757111
I
orange1.1g029982m.g
Citrus sinensis
orange1.1g029982m.g
I
orange1.1g030283m.g
Citrus sinensis
orange1.1g030283m.g
I
orange1.1g031906m.g
Citrus sinensis
orange1.1g031906m.g
I
orange1.1g031973m.g
Citrus sinensis
orange1.1g031973m.g
I
Pavir.Ba01379
Panicum virgatum
Pavir.Ba01379
I
Pavir.Bb02550
Panicum virgatum
Pavir.Bb02550
I
Pavir.Db00040
Panicum virgatum
Pavir.Db00040
I
Pavir.Eb02691
Panicum virgatum
Pavir.Eb02691
I
Pavir.J04920
Panicum virgatum
Pavir.J04920
I
SapurV1A.0016s0600
Salix purpurea
SapurV1A.0016s0600
I
SapurV1A.0061s0170
Salix purpurea
SapurV1A.0061s0170
I
SapurV1A.0085s0030
Salix purpurea
SapurV1A.0085s0030
I
SapurV1A.0266s0310
Salix purpurea
SapurV1A.0266s0310
I
SapurV1A.0825s0160
Salix purpurea
SapurV1A.0825s0160
I
SapurV1A.2780s0020
Salix purpurea
SapurV1A.2780s0020
I
Thhalv10009371m.g
Eutrema salsugineum
Thhalv10009371m.g
I
Thhalv10009970m.g
Eutrema salsugineum
Thhalv10009970m.g
I
Thhalv10010751m.g
Eutrema salsugineum
Thhalv10010751m.g
I
Thhalv10022905m.g
Eutrema salsugineum
Thhalv10022905m.g
I
Thhalv10026524m.g
Eutrema salsugineum
Thhalv10026524m.g
I
PK11149.1
Cannabis sativa
PK11149.1
I
PK14705.1
Cannabis sativa
PK14705.1
I
PK27241.1
Cannabis sativa
PK27241.1
I
PK29786.1
Cannabis sativa
PK29786.1
I
chr1.CM0113.560.nc
Lotus japonicus
chr1.CM0113.560.nc
I
chr5.CM0180.220.nd
Lotus japonicus
chr5.CM0180.220.nd
I
LjT35D08.150.nd
Lotus japonicus
LjT35D08.150.nd
I
PDK_20s1306741g001
Phoenix dactylifera
PDK_20s1306741g001
I
PDK_20s1434871g001
Phoenix dactylifera
PDK_20s1434871g001
I
BGIOSGA008782
Oryza indica
BGIOSGA008782
N
BOTBODRAFT_30512
Botryobasidium botryosum
BOTBODRAFT_30512
N
BRADI3G51140
Brachypodium distachyon
BRADI3G51140
N
GRMZM2G024247
Zea mays
GRMZM2G024247
N
MLOC_7069
Hordeum vulgare
MLOC_7069
N
OB02G34710
Oryza brachyantha
OB02G34710
N
OBART02G27340
Oryza barthii
OBART02G27340
N
OGLUM02G27900
Oryza glumaepatula
OGLUM02G27900
N
OMERI02G26620
Oryza meridionalis
OMERI02G26620
N
ONIVA02G29880
Oryza nivara
ONIVA02G29880
N
OPUNC02G25020
Oryza punctata
OPUNC02G25020
N
ORUFI02G28820
Oryza rufipogon
ORUFI02G28820
N
OS02G0670400
Oryza sativa
OS02G0670400
N
Sb03g030540
Sorghum bicolor
Sb03g030540
N
Si003021m.g
Setaria italica
Si003021m.g
N
ECPE_0000536801
Echinostoma caproni
ECPE_0000536801
N