CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OB04G28040
(
Oryza brachyantha
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
OB04G28040
T124587_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN
NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.786
0.844
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH
DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.786
0.822
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN
NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.785
0.800
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN
NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.769
0.667
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.765
0.667
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.764
0.644
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.764
0.644
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OB04G28040.1
C2H2 ZF
173
195
FQCPACKKVFRSYQALGGHRASH
OB04G28040.1
C2H2 ZF
237
258
HECPHCFRVFASGQALGGHKRS
Links
Other
C2H2 ZF
family TFs
Other
Oryza brachyantha
TFs
166 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28152.m000908
Ricinus communis
28152.m000908
I
0.769
29661.m000908
Ricinus communis
29661.m000908
I
0.770
30170.m013751
Ricinus communis
30170.m013751
I
0.770
30174.m008818
Ricinus communis
30174.m008818
I
0.786
ZAT1
Arabidopsis thaliana
AT1G02030
D
0.785
ZAT4
Arabidopsis thaliana
AT2G45120
D
0.786
AZF2
Arabidopsis thaliana
AT3G19580
D
0.769
ZAT9
Arabidopsis thaliana
AT3G60580
D
0.786
AT5G03510
Arabidopsis thaliana
AT5G03510
D
0.765
AT5G04390
Arabidopsis thaliana
AT5G04390
D
0.764
BGIOSGA008755
Oryza indica
BGIOSGA008755
I
0.811
BGIOSGA016894
Oryza indica
BGIOSGA016894
I
0.821
Bo1g113530
Brassica oleracea
Bo1g113530
I
0.769
Bo3g037560
Brassica oleracea
Bo3g037560
I
0.762
Bo4g104940
Brassica oleracea
Bo4g104940
I
0.786
Bo4g195370
Brassica oleracea
Bo4g195370
I
0.762
Bo5g113850
Brassica oleracea
Bo5g113850
I
0.769
Bo6g077190
Brassica oleracea
Bo6g077190
I
0.786
Bo8g095300
Brassica oleracea
Bo8g095300
I
0.786
Bostr.13158s0058
Boechera stricta
Bostr.13158s0058
I
0.786
Bostr.19424s0704
Boechera stricta
Bostr.19424s0704
I
0.769
Bostr.25993s0262
Boechera stricta
Bostr.25993s0262
I
0.786
Bostr.5325s0123
Boechera stricta
Bostr.5325s0123
I
0.785
Bra000372
Brassica rapa
Bra000372
I
0.762
Bra003422
Brassica rapa
Bra003422
I
0.786
Bra007545
Brassica rapa
Bra007545
I
0.786
Bra014483
Brassica rapa
Bra014483
I
0.786
Bra022436
Brassica rapa
Bra022436
I
0.769
Bra038219
Brassica rapa
Bra038219
I
0.769
Bra040325
Brassica rapa
Bra040325
I
0.762
BRADI1G14750
Brachypodium distachyon
BRADI1G14750
I
0.769
BRADI3G33100
Brachypodium distachyon
BRADI3G33100
I
0.810
BRADI4G03410
Brachypodium distachyon
BRADI4G03410
I
0.769
Cagra.0239s0063
Capsella grandiflora
Cagra.0239s0063
I
0.786
Cagra.6011s0004
Capsella grandiflora
Cagra.6011s0004
I
0.786
Cagra.6943s0031
Capsella grandiflora
Cagra.6943s0031
I
0.769
Carubv10014391m.g
Capsella rubella
Carubv10014391m.g
I
0.769
Carubv10017660m.g
Capsella rubella
Carubv10017660m.g
I
0.786
Carubv10023569m.g
Capsella rubella
Carubv10023569m.g
I
0.786
cassava12475.valid.m1
Manihot esculenta
cassava12475.valid.m1
I
0.770
cassava14164.m1
Manihot esculenta
cassava14164.m1
I
0.776
cassava15802.m1
Manihot esculenta
cassava15802.m1
I
0.764
cassava19892.m1
Manihot esculenta
cassava19892.m1
I
0.786
cassava35732.valid.m1
Manihot esculenta
cassava35732.valid.m1
I
0.769
cassava43667.valid.m1
Manihot esculenta
cassava43667.valid.m1
I
0.769
Ca_01586
Cicer arietinum
Ca_01586
I
0.769
Ca_05641
Cicer arietinum
Ca_05641
I
0.769
Ca_18364
Cicer arietinum
Ca_18364
I
0.769
Ca_23672
Cicer arietinum
Ca_23672
I
0.776
chr5.CM0096.480.nc
Lotus japonicus
chr5.CM0096.480.nc
I
0.769
chr5.CM0200.550.nc
Lotus japonicus
chr5.CM0200.550.nc
I
0.769
Ciclev10002297m.g
Citrus clementina
Ciclev10002297m.g
I
0.769
Ciclev10020499m.g
Citrus clementina
Ciclev10020499m.g
I
0.776
Ciclev10029065m.g
Citrus clementina
Ciclev10029065m.g
I
0.769
Eucgr.D02083
Eucalyptus grandis
Eucgr.D02083
N
0.759
Eucgr.D02497
Eucalyptus grandis
Eucgr.D02497
I
0.785
Eucgr.F02262
Eucalyptus grandis
Eucgr.F02262
I
0.774
Eucgr.G01247
Eucalyptus grandis
Eucgr.G01247
I
0.769
Eucgr.K00165
Eucalyptus grandis
Eucgr.K00165
I
0.766
evm.TU.supercontig_2070.1
Carica papaya
evm.TU.supercontig_2070.1
I
0.786
evm.TU.supercontig_249.7
Carica papaya
evm.TU.supercontig_249.7
I
0.769
AZF2
Arabidopsis lyrata
fgenesh2_kg.3__2173__AT3G19580.2
I
0.769
fgenesh2_kg.4__2705__AT2G45120.1
Arabidopsis lyrata
fgenesh2_kg.4__2705__AT2G45120.1
I
0.786
gene02558-v1.0-hybrid
Fragaria vesca
gene02558-v1.0-hybrid
I
0.769
GLYMA01G18606
Glycine max
GLYMA01G18606
I
0.776
GLYMA01G32981
Glycine max
GLYMA01G32981
I
0.776
GLYMA03G03950
Glycine max
GLYMA03G03950
I
0.776
GLYMA04G04760
Glycine max
GLYMA04G04760
I
0.769
GLYMA06G04840
Glycine max
GLYMA06G04840
I
0.769
GLYMA10G40400
Glycine max
GLYMA10G40400
I
0.769
GLYMA14G09760
Glycine max
GLYMA14G09760
I
0.769
GLYMA17G35430
Glycine max
GLYMA17G35430
I
0.769
Gorai.001G175400
Gossypium raimondii
Gorai.001G175400
I
0.786
Gorai.002G132600
Gossypium raimondii
Gorai.002G132600
I
0.769
Gorai.004G164000
Gossypium raimondii
Gorai.004G164000
I
0.785
Gorai.008G020700
Gossypium raimondii
Gorai.008G020700
I
0.769
Gorai.008G106500
Gossypium raimondii
Gorai.008G106500
I
0.785
Gorai.010G025200
Gossypium raimondii
Gorai.010G025200
I
0.769
Gorai.013G050100
Gossypium raimondii
Gorai.013G050100
I
0.769
GRMZM2G170520
Zea mays
GRMZM2G170520
I
0.797
GSMUA_Achr11G21040_001
Musa acuminata
GSMUA_Achr11G21040_001
I
0.810
GSMUA_Achr1G01550_001
Musa acuminata
GSMUA_Achr1G01550_001
I
0.816
GSMUA_Achr4G12160_001
Musa acuminata
GSMUA_Achr4G12160_001
I
0.786
GSMUA_Achr4G26920_001
Musa acuminata
GSMUA_Achr4G26920_001
I
0.816
GSMUA_Achr5G08730_001
Musa acuminata
GSMUA_Achr5G08730_001
I
0.759
GSMUA_Achr5G15450_001
Musa acuminata
GSMUA_Achr5G15450_001
I
0.806
GSMUA_AchrUn_randomG03030_001
Musa acuminata
GSMUA_AchrUn_randomG03030_001
I
0.786
LPERR03G21480
Leersia perrieri
LPERR03G21480
I
0.759
Lus10009278.g
Linum usitatissimum
Lus10009278.g
I
0.786
Lus10015888.g
Linum usitatissimum
Lus10015888.g
I
0.776
MDP0000198015
Malus domestica
MDP0000198015
I
0.769
MDP0000319225
Malus domestica
MDP0000319225
I
0.769
MDP0000573176
Malus domestica
MDP0000573176
I
0.769
MDP0000762756
Malus domestica
MDP0000762756
I
0.769
mgf006006m
Mimulus guttatus
mgf006006m
I
0.770
mgf017082m
Mimulus guttatus
mgf017082m
I
0.776
mgf021094m
Mimulus guttatus
mgf021094m
I
0.775
mgf021789m
Mimulus guttatus
mgf021789m
I
0.760
MLOC_51405
Hordeum vulgare
MLOC_51405
I
0.769
MLOC_54674
Hordeum vulgare
MLOC_54674
I
0.769
MTR_0160s0030
Medicago truncatula
MTR_0160s0030
I
0.776
MTR_1g018420
Medicago truncatula
MTR_1g018420
I
0.770
MTR_1g106730
Medicago truncatula
MTR_1g106730
I
0.769
MTR_3g102980
Medicago truncatula
MTR_3g102980
I
0.769
MTR_4g027440
Medicago truncatula
MTR_4g027440
I
0.776
OBART02G26700
Oryza barthii
OBART02G26700
I
0.811
OBART04G21020
Oryza barthii
OBART04G21020
I
0.821
OGLUM02G27190
Oryza glumaepatula
OGLUM02G27190
I
0.811
OLONG_016061
Oryza longistaminata
OLONG_016061
I
0.827
OMERI02G26030
Oryza meridionalis
OMERI02G26030
I
0.811
OMERI04G17450
Oryza meridionalis
OMERI04G17450
I
0.821
ONIVA02G29150
Oryza nivara
ONIVA02G29150
I
0.811
ONIVA04G19260
Oryza nivara
ONIVA04G19260
I
0.821
OPUNC04G18700
Oryza punctata
OPUNC04G18700
I
0.821
OPUNC12G15600
Oryza punctata
OPUNC12G15600
I
0.769
orange1.1g024499m.g
Citrus sinensis
orange1.1g024499m.g
I
0.769
orange1.1g038669m.g
Citrus sinensis
orange1.1g038669m.g
I
0.769
orange1.1g044606m.g
Citrus sinensis
orange1.1g044606m.g
I
0.776
ORGLA02G0229600
Oryza glaberrima
ORGLA02G0229600
I
0.811
ORGLA04G0180800
Oryza glaberrima
ORGLA04G0180800
I
0.821
ORUFI02G28150
Oryza rufipogon
ORUFI02G28150
I
0.811
ORUFI04G22610
Oryza rufipogon
ORUFI04G22610
I
0.821
OS02G0659500
Oryza sativa
OS02G0659500
I
0.811
OS04G0552700
Oryza sativa
OS04G0552700
I
0.821
OS12G0583700
Oryza sativa
OS12G0583700
I
0.769
Pavir.Ab02618
Panicum virgatum
Pavir.Ab02618
I
0.798
PGSC0003DMG400002383
Solanum tuberosum
PGSC0003DMG400002383
I
0.769
PGSC0003DMG400011548
Solanum tuberosum
PGSC0003DMG400011548
I
0.769
PGSC0003DMG400020929
Solanum tuberosum
PGSC0003DMG400020929
I
0.780
PGSC0003DMG400024550
Solanum tuberosum
PGSC0003DMG400024550
I
0.785
PGSC0003DMG400026020
Solanum tuberosum
PGSC0003DMG400026020
I
0.762
PGSC0003DMG400028275
Solanum tuberosum
PGSC0003DMG400028275
I
0.759
PGSC0003DMG400041467
Solanum tuberosum
PGSC0003DMG400041467
I
0.769
PK10188.1
Cannabis sativa
PK10188.1
I
0.769
Pm005390
Prunus mume
Pm005390
I
0.769
Pm021284
Prunus mume
Pm021284
I
0.769
POPTR_0002s12010
Populus trichocarpa
POPTR_0002s12010
I
0.770
POPTR_0002s14460
Populus trichocarpa
POPTR_0002s14460
I
0.786
POPTR_0006s12340
Populus trichocarpa
POPTR_0006s12340
I
0.764
POPTR_0009s09250
Populus trichocarpa
POPTR_0009s09250
I
0.769
POPTR_0014s01760
Populus trichocarpa
POPTR_0014s01760
I
0.769
PRUPE_ppa009924mg
Prunus persica
PRUPE_ppa009924mg
I
0.769
PRUPE_ppa011060mg
Prunus persica
PRUPE_ppa011060mg
I
0.769
SapurV1A.0005s0440
Salix purpurea
SapurV1A.0005s0440
I
0.769
SapurV1A.0019s0280
Salix purpurea
SapurV1A.0019s0280
I
0.769
SapurV1A.0033s0440
Salix purpurea
SapurV1A.0033s0440
I
0.785
SapurV1A.0248s0230
Salix purpurea
SapurV1A.0248s0230
I
0.786
SapurV1A.0845s0100
Salix purpurea
SapurV1A.0845s0100
I
0.769
scaffold_503291.1
Arabidopsis lyrata
scaffold_503291.1
I
0.786
Si010615m.g
Setaria italica
Si010615m.g
I
0.797
Si023013m.g
Setaria italica
Si023013m.g
I
0.769
Solyc01g090840.2
Solanum lycopersicum
Solyc01g090840.2
I
0.762
Solyc03g115450.1
Solanum lycopersicum
Solyc03g115450.1
I
0.785
Solyc12g088390.1
Solanum lycopersicum
Solyc12g088390.1
I
0.770
TCM_007214
Theobroma cacao
TCM_007214
I
0.769
TCM_034720
Theobroma cacao
TCM_034720
I
0.769
Thhalv10001538m.g
Eutrema salsugineum
Thhalv10001538m.g
I
0.762
Thhalv10006508m.g
Eutrema salsugineum
Thhalv10006508m.g
I
0.786
Thhalv10009894m.g
Eutrema salsugineum
Thhalv10009894m.g
I
0.772
Thhalv10021307m.g
Eutrema salsugineum
Thhalv10021307m.g
I
0.769
Traes_4BS_FE945D2FC
Triticum aestivum
Traes_4BS_FE945D2FC
I
0.769
TRIUR3_29692
Triticum urartu
TRIUR3_29692
I
0.806
VIT_03s0091g00690
Vitis vinifera
VIT_03s0091g00690
I
0.770
VIT_07s0129g00240
Vitis vinifera
VIT_07s0129g00240
I
0.770
VIT_15s0021g02720
Vitis vinifera
VIT_15s0021g02720
I
0.786
VIT_18s0001g09230
Vitis vinifera
VIT_18s0001g09230
I
0.769