CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OB11G27860
(
Oryza brachyantha
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
OB11G27860
T124607_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.773
0.696
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.773
0.696
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.772
0.674
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OB11G27860.1
C2H2 ZF
46
68
FQCRTCGRRFSTFQALGGHRTSH
OB11G27860.1
C2H2 ZF
101
123
HRCDMCGKVFSTGQALGGHMRRH
Links
Other
C2H2 ZF
family TFs
Other
Oryza brachyantha
TFs
138 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA033524
Oryza indica
BGIOSGA033524
I
0.827
OBART11G23480
Oryza barthii
OBART11G23480
I
0.827
OPUNC11G19830
Oryza punctata
OPUNC11G19830
I
0.827
ORGLA11G0188100
Oryza glaberrima
ORGLA11G0188100
I
0.827
ORUFI11G25330
Oryza rufipogon
ORUFI11G25330
I
0.827
OS11G0702400
Oryza sativa
OS11G0702400
I
0.827
Pavir.Cb00699
Panicum virgatum
Pavir.Cb00699
N
0.796
Pavir.J14296
Panicum virgatum
Pavir.J14296
I
0.796
Pavir.J30713
Panicum virgatum
Pavir.J30713
I
0.796
F775_14723
Aegilops tauschii
F775_14723
I
0.791
GRMZM2G338056
Zea mays
GRMZM2G338056
I
0.791
Si026973m.g
Setaria italica
Si026973m.g
I
0.791
Si027432m.g
Setaria italica
Si027432m.g
I
0.791
Traes_4DS_276818E4F
Triticum aestivum
Traes_4DS_276818E4F
I
0.791
Pavir.Da00814
Panicum virgatum
Pavir.Da00814
I
0.791
Pavir.Da00815
Panicum virgatum
Pavir.Da00815
I
0.791
Pavir.Da01563
Panicum virgatum
Pavir.Da01563
I
0.791
Pavir.Ha00194
Panicum virgatum
Pavir.Ha00194
I
0.791
Pavir.Hb00003
Panicum virgatum
Pavir.Hb00003
I
0.791
Pavir.Hb00056
Panicum virgatum
Pavir.Hb00056
I
0.791
MLOC_76196
Hordeum vulgare
MLOC_76196
I
0.786
Sb05g027450
Sorghum bicolor
Sb05g027450
I
0.786
BRADI4G09410
Brachypodium distachyon
BRADI4G09410
I
0.785
F775_30896
Aegilops tauschii
F775_30896
I
0.784
GSMUA_Achr11G23970_001
Musa acuminata
GSMUA_Achr11G23970_001
I
0.784
TRIUR3_01060
Triticum urartu
TRIUR3_01060
I
0.784
MLOC_14920
Hordeum vulgare
MLOC_14920
I
0.783
Traes_5DL_4B4927090
Triticum aestivum
Traes_5DL_4B4927090
I
0.783
GSMUA_Achr10G06730_001
Musa acuminata
GSMUA_Achr10G06730_001
I
0.782
F775_08752
Aegilops tauschii
F775_08752
I
0.778
AC205250.3_FG004
Zea mays
AC205250.3_FG004
I
0.774
OPUNC03G12210
Oryza punctata
OPUNC03G12210
I
0.774
AT5G04390
Arabidopsis thaliana
AT5G04390
D
0.773
POPTR_0006s12340
Populus trichocarpa
POPTR_0006s12340
I
0.773
cassava15802.m1
Manihot esculenta
cassava15802.m1
I
0.773
Lus10040312.g
Linum usitatissimum
Lus10040312.g
I
0.773
AT5G03510
Arabidopsis thaliana
AT5G03510
D
0.772
SapurV1A.0008s0970
Salix purpurea
SapurV1A.0008s0970
I
0.772
Pavir.Da01393
Panicum virgatum
Pavir.Da01393
I
0.767
Pavir.Ha00193
Panicum virgatum
Pavir.Ha00193
I
0.767
Pavir.Hb00023
Panicum virgatum
Pavir.Hb00023
I
0.767
GRMZM2G002805
Zea mays
GRMZM2G002805
I
0.764
GRMZM2G061626
Zea mays
GRMZM2G061626
I
0.764
TRIUR3_01057
Triticum urartu
TRIUR3_01057
N
0.764
F775_18611
Aegilops tauschii
F775_18611
I
0.762
F775_30269
Aegilops tauschii
F775_30269
I
0.762
F775_52290
Aegilops tauschii
F775_52290
I
0.762
GSMUA_Achr7G20260_001
Musa acuminata
GSMUA_Achr7G20260_001
N
0.762
Traes_5BL_630A8A142
Triticum aestivum
Traes_5BL_630A8A142
I
0.762
Traes_5BL_63AE36D3A
Triticum aestivum
Traes_5BL_63AE36D3A
I
0.762
Traes_5BL_D53A846BE
Triticum aestivum
Traes_5BL_D53A846BE
I
0.762
Traes_5BL_F74D668D9
Triticum aestivum
Traes_5BL_F74D668D9
I
0.762
Traes_5DL_4E890ABF3
Triticum aestivum
Traes_5DL_4E890ABF3
I
0.762
TRIUR3_15912
Triticum urartu
TRIUR3_15912
I
0.762
Pavir.J03079
Panicum virgatum
Pavir.J03079
I
0.762
BGIOSGA013831
Oryza indica
BGIOSGA013831
I
0.760
BRADI1G03770
Brachypodium distachyon
BRADI1G03770
I
0.760
F775_18609
Aegilops tauschii
F775_18609
I
0.760
F775_30895
Aegilops tauschii
F775_30895
I
0.760
GSMUA_Achr10G13530_001
Musa acuminata
GSMUA_Achr10G13530_001
I
0.760
GSMUA_Achr10G31400_001
Musa acuminata
GSMUA_Achr10G31400_001
N
0.760
LPERR03G33230
Leersia perrieri
LPERR03G33230
I
0.760
MLOC_19822
Hordeum vulgare
MLOC_19822
I
0.760
OGLUM03G38900
Oryza glumaepatula
OGLUM03G38900
I
0.760
OMERI03G35870
Oryza meridionalis
OMERI03G35870
I
0.760
ONIVA03G40710
Oryza nivara
ONIVA03G40710
I
0.760
ORGLA03G0358100
Oryza glaberrima
ORGLA03G0358100
I
0.760
ORUFI03G40740
Oryza rufipogon
ORUFI03G40740
I
0.760
OS03G0820300
Oryza sativa
OS03G0820300
I
0.760
Traes_5BL_3A9D3CEEF
Triticum aestivum
Traes_5BL_3A9D3CEEF
I
0.760
Traes_5BL_3B50B6963
Triticum aestivum
Traes_5BL_3B50B6963
I
0.760
Traes_5BL_56E52A2FC
Triticum aestivum
Traes_5BL_56E52A2FC
N
0.760
Traes_5BL_6F2D345E2
Triticum aestivum
Traes_5BL_6F2D345E2
I
0.760
Traes_5BL_9C687EE11
Triticum aestivum
Traes_5BL_9C687EE11
I
0.760
Traes_5BL_BB99746DD
Triticum aestivum
Traes_5BL_BB99746DD
I
0.760
Traes_5DL_90F570468
Triticum aestivum
Traes_5DL_90F570468
I
0.760
Traes_5DL_9D713AD9C
Triticum aestivum
Traes_5DL_9D713AD9C
I
0.760
TRIUR3_01063
Triticum urartu
TRIUR3_01063
I
0.760
TRIUR3_01065
Triticum urartu
TRIUR3_01065
I
0.760
BGIOSGA013832
Oryza indica
BGIOSGA013832
I
0.759
BRADI1G03780
Brachypodium distachyon
BRADI1G03780
I
0.759
BRADI1G03790
Brachypodium distachyon
BRADI1G03790
I
0.759
F775_17661
Aegilops tauschii
F775_17661
I
0.759
F775_18608
Aegilops tauschii
F775_18608
I
0.759
F775_22659
Aegilops tauschii
F775_22659
I
0.759
GRMZM2G002815
Zea mays
GRMZM2G002815
I
0.759
GRMZM2G307402
Zea mays
GRMZM2G307402
I
0.759
LPERR03G33240
Leersia perrieri
LPERR03G33240
I
0.759
MLOC_63032
Hordeum vulgare
MLOC_63032
I
0.759
MLOC_67028
Hordeum vulgare
MLOC_67028
I
0.759
OB03G46010
Oryza brachyantha
OB03G46010
I
0.759
OBART03G39050
Oryza barthii
OBART03G39050
I
0.759
OGLUM03G38910
Oryza glumaepatula
OGLUM03G38910
I
0.759
OMERI03G35880
Oryza meridionalis
OMERI03G35880
I
0.759
ONIVA03G40720
Oryza nivara
ONIVA03G40720
I
0.759
ORGLA03G0358200
Oryza glaberrima
ORGLA03G0358200
I
0.759
OS03G0820400
Oryza sativa
OS03G0820400
I
0.759
PGSC0003DMG401030312
Solanum tuberosum
PGSC0003DMG401030312
I
0.759
Sb01g003280
Sorghum bicolor
Sb01g003280
I
0.759
Si003051m.g
Setaria italica
Si003051m.g
I
0.759
Si037251m.g
Setaria italica
Si037251m.g
I
0.759
Si037672m.g
Setaria italica
Si037672m.g
I
0.759
Solyc06g075780.1
Solanum lycopersicum
Solyc06g075780.1
I
0.759
Traes_5BL_8DB8274DB1
Triticum aestivum
Traes_5BL_8DB8274DB1
I
0.759
Traes_5BL_B038BE0A3
Triticum aestivum
Traes_5BL_B038BE0A3
I
0.759
Traes_5DL_50E35B4F3
Triticum aestivum
Traes_5DL_50E35B4F3
I
0.759
Traes_5DL_F269EF70D
Triticum aestivum
Traes_5DL_F269EF70D
I
0.759
TRIUR3_12166
Triticum urartu
TRIUR3_12166
I
0.759
TRIUR3_15911
Triticum urartu
TRIUR3_15911
I
0.759
Eucgr.B02398
Eucalyptus grandis
Eucgr.B02398
I
0.759
Pavir.Ia00291
Panicum virgatum
Pavir.Ia00291
I
0.759
Pavir.Ia00292
Panicum virgatum
Pavir.Ia00292
I
0.759
Pavir.J00893
Panicum virgatum
Pavir.J00893
I
0.759
Pavir.J00894
Panicum virgatum
Pavir.J00894
I
0.759
BGIOSGA004768
Oryza indica
BGIOSGA004768
I
0.758
BRADI2G54500
Brachypodium distachyon
BRADI2G54500
I
0.758
GRMZM2G112799
Zea mays
GRMZM2G112799
I
0.758
GRMZM2G376061
Zea mays
GRMZM2G376061
I
0.758
GSMUA_Achr11G02250_001
Musa acuminata
GSMUA_Achr11G02250_001
I
0.758
GSMUA_Achr11G21920_001
Musa acuminata
GSMUA_Achr11G21920_001
I
0.758
GSMUA_Achr1G06720_001
Musa acuminata
GSMUA_Achr1G06720_001
I
0.758
LPERR01G31500
Leersia perrieri
LPERR01G31500
I
0.758
OGLUM01G40530
Oryza glumaepatula
OGLUM01G40530
I
0.758
OMERI01G33710
Oryza meridionalis
OMERI01G33710
I
0.758
ONIVA01G41740
Oryza nivara
ONIVA01G41740
I
0.758
OPUNC01G35440
Oryza punctata
OPUNC01G35440
I
0.758
OPUNC01G35470
Oryza punctata
OPUNC01G35470
I
0.758
ORGLA01G0304700
Oryza glaberrima
ORGLA01G0304700
I
0.758
OS01G0839100
Oryza sativa
OS01G0839100
I
0.758
Sb03g039270
Sorghum bicolor
Sb03g039270
I
0.758
Sb10g031270
Sorghum bicolor
Sb10g031270
I
0.758
Si008395m.g
Setaria italica
Si008395m.g
I
0.758
Solyc11g073060.1
Solanum lycopersicum
Solyc11g073060.1
I
0.758
TRAES3BF127400030CFD_g
Triticum aestivum
TRAES3BF127400030CFD_g
I
0.758
Pavir.Eb03660
Panicum virgatum
Pavir.Eb03660
I
0.758
Pavir.J04850
Panicum virgatum
Pavir.J04850
I
0.758
Pavir.J14338
Panicum virgatum
Pavir.J14338
I
0.758
LPERR05G15220
Leersia perrieri
LPERR05G15220
I
0.756