CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ONIVA05G20190
(
Oryza nivara
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ONIVA05G20190
T124965_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.773
0.783
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.761
0.739
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ONIVA05G20190.1
C2H2 ZF
33
55
FRCKTCSKTFTSFQALGGHRTGH
ONIVA05G20190.1
C2H2 ZF
90
112
HLCAVCGVEFRMGQALGGHMRRH
Links
Other
C2H2 ZF
family TFs
Other
Oryza nivara
TFs
103 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OBART05G19310
Oryza barthii
OBART05G19310
I
0.827
OGLUM05G20400
Oryza glumaepatula
OGLUM05G20400
I
0.827
ORGLA05G0167500
Oryza glaberrima
ORGLA05G0167500
I
0.827
ORUFI05G20520
Oryza rufipogon
ORUFI05G20520
I
0.827
OS05G0460900
Oryza sativa
OS05G0460900
I
0.827
OMERI05G16850
Oryza meridionalis
OMERI05G16850
I
0.803
GRMZM2G002815
Zea mays
GRMZM2G002815
I
0.787
OPUNC05G16930
Oryza punctata
OPUNC05G16930
I
0.779
OPUNC05G16960
Oryza punctata
OPUNC05G16960
I
0.779
Sb05g027450
Sorghum bicolor
Sb05g027450
I
0.777
ZAT8
Arabidopsis thaliana
AT3G46080
I
0.773
ZAT7
Arabidopsis thaliana
AT3G46090
D
0.773
fgenesh2_kg.5__981__AT3G46090.1
Arabidopsis lyrata
fgenesh2_kg.5__981__AT3G46090.1
I
0.773
Bostr.18473s0333
Boechera stricta
Bostr.18473s0333
I
0.773
Cagra.7309s0001
Capsella grandiflora
Cagra.7309s0001
I
0.773
Carubv10018142m.g
Capsella rubella
Carubv10018142m.g
I
0.773
Pavir.Da00814
Panicum virgatum
Pavir.Da00814
I
0.773
Pavir.Da00815
Panicum virgatum
Pavir.Da00815
I
0.773
Pavir.J30713
Panicum virgatum
Pavir.J30713
I
0.773
BRADI2G23160
Brachypodium distachyon
BRADI2G23160
I
0.772
GRMZM2G338056
Zea mays
GRMZM2G338056
I
0.772
Si026973m.g
Setaria italica
Si026973m.g
I
0.772
Si027432m.g
Setaria italica
Si027432m.g
I
0.772
Pavir.Da01563
Panicum virgatum
Pavir.Da01563
I
0.772
Pavir.Ha00194
Panicum virgatum
Pavir.Ha00194
I
0.772
Pavir.Hb00003
Panicum virgatum
Pavir.Hb00003
I
0.772
Pavir.Hb00056
Panicum virgatum
Pavir.Hb00056
I
0.772
Pavir.J14296
Panicum virgatum
Pavir.J14296
I
0.772
BGIOSGA004768
Oryza indica
BGIOSGA004768
I
0.770
OGLUM01G40530
Oryza glumaepatula
OGLUM01G40530
I
0.770
OMERI01G33710
Oryza meridionalis
OMERI01G33710
I
0.770
ONIVA01G41740
Oryza nivara
ONIVA01G41740
I
0.770
OPUNC01G35440
Oryza punctata
OPUNC01G35440
I
0.770
OPUNC01G35470
Oryza punctata
OPUNC01G35470
I
0.770
ORGLA01G0304700
Oryza glaberrima
ORGLA01G0304700
I
0.770
OS01G0839100
Oryza sativa
OS01G0839100
I
0.770
BRADI2G54500
Brachypodium distachyon
BRADI2G54500
I
0.769
GRMZM2G112799
Zea mays
GRMZM2G112799
I
0.769
GRMZM2G376061
Zea mays
GRMZM2G376061
I
0.769
LPERR01G31500
Leersia perrieri
LPERR01G31500
I
0.769
Sb03g039270
Sorghum bicolor
Sb03g039270
I
0.769
TRAES3BF127400030CFD_g
Triticum aestivum
TRAES3BF127400030CFD_g
I
0.769
Pavir.Eb03660
Panicum virgatum
Pavir.Eb03660
I
0.769
Pavir.J14338
Panicum virgatum
Pavir.J14338
I
0.769
Si003051m.g
Setaria italica
Si003051m.g
I
0.768
Pavir.J03079
Panicum virgatum
Pavir.J03079
I
0.767
BRADI1G03780
Brachypodium distachyon
BRADI1G03780
I
0.763
F775_17661
Aegilops tauschii
F775_17661
I
0.763
MLOC_14920
Hordeum vulgare
MLOC_14920
I
0.763
MLOC_67028
Hordeum vulgare
MLOC_67028
I
0.763
Si037251m.g
Setaria italica
Si037251m.g
I
0.763
Traes_5BL_B038BE0A3
Triticum aestivum
Traes_5BL_B038BE0A3
I
0.763
TRIUR3_12166
Triticum urartu
TRIUR3_12166
I
0.763
TRIUR3_15911
Triticum urartu
TRIUR3_15911
I
0.763
Pavir.Ia00291
Panicum virgatum
Pavir.Ia00291
I
0.763
Pavir.J00893
Panicum virgatum
Pavir.J00893
I
0.763
Thhalv10002839m.g
Eutrema salsugineum
Thhalv10002839m.g
I
0.763
Bo1g067420
Brassica oleracea
Bo1g067420
I
0.762
Bra019477
Brassica rapa
Bra019477
I
0.762
Cagra.7309s0002
Capsella grandiflora
Cagra.7309s0002
I
0.762
Carubv10018774m.g
Capsella rubella
Carubv10018774m.g
I
0.762
AT3G46070
Arabidopsis thaliana
AT3G46070
D
0.761
BRADI1G03770
Brachypodium distachyon
BRADI1G03770
I
0.761
GSMUA_Achr10G13530_001
Musa acuminata
GSMUA_Achr10G13530_001
I
0.761
Traes_5BL_3B50B6963
Triticum aestivum
Traes_5BL_3B50B6963
I
0.761
Traes_5BL_56E52A2FC
Triticum aestivum
Traes_5BL_56E52A2FC
N
0.761
Traes_5DL_9D713AD9C
Triticum aestivum
Traes_5DL_9D713AD9C
I
0.761
Traes_5DL_F269EF70D
Triticum aestivum
Traes_5DL_F269EF70D
I
0.761
scaffold_501490.1
Arabidopsis lyrata
scaffold_501490.1
I
0.759
GRMZM2G002805
Zea mays
GRMZM2G002805
I
0.758
GRMZM2G061626
Zea mays
GRMZM2G061626
I
0.758
TRIUR3_01057
Triticum urartu
TRIUR3_01057
N
0.758
BGIOSGA013832
Oryza indica
BGIOSGA013832
I
0.757
BRADI1G03790
Brachypodium distachyon
BRADI1G03790
I
0.757
F775_18608
Aegilops tauschii
F775_18608
I
0.757
LPERR03G33240
Leersia perrieri
LPERR03G33240
I
0.757
MLOC_63032
Hordeum vulgare
MLOC_63032
I
0.757
OB03G46010
Oryza brachyantha
OB03G46010
I
0.757
OBART03G39050
Oryza barthii
OBART03G39050
I
0.757
OGLUM03G38910
Oryza glumaepatula
OGLUM03G38910
I
0.757
OMERI03G35880
Oryza meridionalis
OMERI03G35880
I
0.757
ONIVA03G40720
Oryza nivara
ONIVA03G40720
I
0.757
ORGLA03G0358200
Oryza glaberrima
ORGLA03G0358200
I
0.757
OS03G0820400
Oryza sativa
OS03G0820400
I
0.757
PGSC0003DMG401030312
Solanum tuberosum
PGSC0003DMG401030312
I
0.757
Sb01g003280
Sorghum bicolor
Sb01g003280
I
0.757
Si037672m.g
Setaria italica
Si037672m.g
I
0.757
Solyc06g075780.1
Solanum lycopersicum
Solyc06g075780.1
I
0.757
Traes_5BL_8DB8274DB1
Triticum aestivum
Traes_5BL_8DB8274DB1
I
0.757
Traes_5DL_4B4927090
Triticum aestivum
Traes_5DL_4B4927090
I
0.757
Traes_5DL_50E35B4F3
Triticum aestivum
Traes_5DL_50E35B4F3
I
0.757
Eucgr.B02398
Eucalyptus grandis
Eucgr.B02398
I
0.757
Pavir.Ia00294
Panicum virgatum
Pavir.Ia00294
I
0.757
Pavir.Ib04509
Panicum virgatum
Pavir.Ib04509
I
0.757
GSMUA_Achr10G06730_001
Musa acuminata
GSMUA_Achr10G06730_001
I
0.756
GSMUA_Achr11G02250_001
Musa acuminata
GSMUA_Achr11G02250_001
I
0.756
GSMUA_Achr11G21920_001
Musa acuminata
GSMUA_Achr11G21920_001
I
0.756
GSMUA_Achr1G06720_001
Musa acuminata
GSMUA_Achr1G06720_001
I
0.756
Sb10g031270
Sorghum bicolor
Sb10g031270
I
0.756
Si008395m.g
Setaria italica
Si008395m.g
I
0.756
Solyc11g073060.1
Solanum lycopersicum
Solyc11g073060.1
I
0.756
Traes_5BL_BB99746DD
Triticum aestivum
Traes_5BL_BB99746DD
I
0.756
Pavir.J04850
Panicum virgatum
Pavir.J04850
I
0.756