SELMODRAFT_68340 (Selaginella moellendorffii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 SELMODRAFT_68340 T128508_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.762 0.867
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.762 0.867
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFJ32649 C2H2 ZF 107 129
EFJ32649 C2H2 ZF 128 159

Links

Other C2H2 ZF family TFs
Other Selaginella moellendorffii TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SELMODRAFT_58361 Selaginella moellendorffii SELMODRAFT_58361 I 0.827
SELMODRAFT_48276 Selaginella moellendorffii SELMODRAFT_48276 N 0.807
SELMODRAFT_58353 Selaginella moellendorffii SELMODRAFT_58353 N 0.798
SELMODRAFT_48272 Selaginella moellendorffii SELMODRAFT_48272 I 0.786
SELMODRAFT_58350 Selaginella moellendorffii SELMODRAFT_58350 I 0.786
PDK_20s1338731g001 Phoenix dactylifera PDK_20s1338731g001 I 0.782
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.772
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.772
Cla016623 Citrullus lanatus Cla016623 I 0.768
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.768
gw1.37.119.1 Physcomitrella patens gw1.37.119.1 N 0.768
STOP1 Arabidopsis thaliana AT1G34370 D 0.762
Bo8g027000 Brassica oleracea Bo8g027000 I 0.762
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.762
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.762
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.762
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.762
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.762
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.762
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.762
TCM_036719 Theobroma cacao TCM_036719 I 0.762
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.762
Ca_04300 Cicer arietinum Ca_04300 I 0.762
Pm022201 Prunus mume Pm022201 I 0.762
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.762
mgf000060m Mimulus guttatus mgf000060m I 0.762
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.762
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.762
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.762
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.762
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.762
MDP0000141403 Malus domestica MDP0000141403 I 0.762
MDP0000199559 Malus domestica MDP0000199559 I 0.762
MDP0000551046 Malus domestica MDP0000551046 I 0.762
MDP0000807856 Malus domestica MDP0000807856 I 0.762
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.762
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.762
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.762
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.762
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.762
PK23301.1 Cannabis sativa PK23301.1 I 0.762