CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Cla006093
(
Citrullus lanatus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cla006093
T133934_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla006093
C2H2 ZF
43
65
YECVFCKRGFTTAQALGGHMNIH
Links
Other
C2H2 ZF
family TFs
Other
Citrullus lanatus
TFs
79 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MTR_1g070250
Medicago truncatula
MTR_1g070250
N
0.827
Cucsa.016990
Cucumis sativus
Cucsa.016990
N
0.827
Ciclev10022375m.g
Citrus clementina
Ciclev10022375m.g
N
0.827
orange1.1g044013m.g
Citrus sinensis
orange1.1g044013m.g
N
0.827
PK22236.1
Cannabis sativa
PK22236.1
N
0.827
AMTR_s00009p00194700
Amborella trichopoda
AMTR_s00009p00194700
N
0.817
AMTR_s00012p00258620
Amborella trichopoda
AMTR_s00012p00258620
N
0.817
VIT_06s0004g05260
Vitis vinifera
VIT_06s0004g05260
N
0.817
PDK_20s1360411g002
Phoenix dactylifera
PDK_20s1360411g002
N
0.817
BGIOSGA025569
Oryza indica
BGIOSGA025569
N
0.814
Bo7g065530
Brassica oleracea
Bo7g065530
N
0.814
Bo9g059250
Brassica oleracea
Bo9g059250
N
0.814
Bra027500
Brassica rapa
Bra027500
N
0.814
Bra033683
Brassica rapa
Bra033683
N
0.814
BRADI1G52490
Brachypodium distachyon
BRADI1G52490
I
0.814
GLYMA10G32810
Glycine max
GLYMA10G32810
N
0.814
GLYMA12G06340
Glycine max
GLYMA12G06340
N
0.814
GLYMA20G34840
Glycine max
GLYMA20G34840
N
0.814
GRMZM2G409452
Zea mays
GRMZM2G409452
I
0.814
GRMZM2G443109
Zea mays
GRMZM2G443109
I
0.814
GSMUA_Achr8G14360_001
Musa acuminata
GSMUA_Achr8G14360_001
N
0.814
LPERR07G09750
Leersia perrieri
LPERR07G09750
N
0.814
MTR_1g075430
Medicago truncatula
MTR_1g075430
N
0.814
MTR_4g064873
Medicago truncatula
MTR_4g064873
N
0.814
OB07G18110
Oryza brachyantha
OB07G18110
N
0.814
OBART07G11660
Oryza barthii
OBART07G11660
N
0.814
OGLUM07G11160
Oryza glumaepatula
OGLUM07G11160
N
0.814
OLONG_012182
Oryza longistaminata
OLONG_012182
N
0.814
ONIVA07G09630
Oryza nivara
ONIVA07G09630
N
0.814
ONIVA07G09640
Oryza nivara
ONIVA07G09640
N
0.814
OPUNC07G10480
Oryza punctata
OPUNC07G10480
N
0.814
ORGLA07G0099100
Oryza glaberrima
ORGLA07G0099100
N
0.814
ORUFI07G11810
Oryza rufipogon
ORUFI07G11810
N
0.814
OS07G0417400
Oryza sativa
OS07G0417400
N
0.814
PRUPE_ppa016491mg
Prunus persica
PRUPE_ppa016491mg
N
0.814
PRUPE_ppa021945mg
Prunus persica
PRUPE_ppa021945mg
N
0.814
Sb02g009930
Sorghum bicolor
Sb02g009930
I
0.814
scaffold_800693.1
Arabidopsis lyrata
scaffold_800693.1
N
0.814
Si032478m.g
Setaria italica
Si032478m.g
I
0.814
TCM_020819
Theobroma cacao
TCM_020819
N
0.814
Traes_2AS_099955797
Triticum aestivum
Traes_2AS_099955797
I
0.814
Traes_2BS_0544D9D4B
Triticum aestivum
Traes_2BS_0544D9D4B
I
0.814
Traes_2DS_035AA95E3
Triticum aestivum
Traes_2DS_035AA95E3
I
0.814
TRIUR3_25222
Triticum urartu
TRIUR3_25222
I
0.814
Cla008348
Citrullus lanatus
Cla008348
N
0.814
Cla021877
Citrullus lanatus
Cla021877
N
0.814
Pm009419
Prunus mume
Pm009419
N
0.814
cassava32634.m1
Manihot esculenta
cassava32634.m1
N
0.814
Cucsa.117650
Cucumis sativus
Cucsa.117650
N
0.814
Bostr.3148s0115
Boechera stricta
Bostr.3148s0115
N
0.814
Cagra.19122s0001
Capsella grandiflora
Cagra.19122s0001
N
0.814
Carubv10028256m.g
Capsella rubella
Carubv10028256m.g
N
0.814
Ciclev10006751m.g
Citrus clementina
Ciclev10006751m.g
N
0.814
Eucgr.H00184
Eucalyptus grandis
Eucgr.H00184
N
0.814
evm.TU.supercontig_44.98
Carica papaya
evm.TU.supercontig_44.98
N
0.814
gene30215-v1.0-hybrid
Fragaria vesca
gene30215-v1.0-hybrid
N
0.814
Gorai.011G172000
Gossypium raimondii
Gorai.011G172000
N
0.814
Lus10021213.g
Linum usitatissimum
Lus10021213.g
I
0.814
Lus10022204.g
Linum usitatissimum
Lus10022204.g
I
0.814
MDP0000143134
Malus domestica
MDP0000143134
N
0.814
orange1.1g037433m.g
Citrus sinensis
orange1.1g037433m.g
N
0.814
Pavir.Ba02387
Panicum virgatum
Pavir.Ba02387
I
0.814
Pavir.Bb00955
Panicum virgatum
Pavir.Bb00955
I
0.814
SapurV1A.0007s0800
Salix purpurea
SapurV1A.0007s0800
I
0.814
SapurV1A.0292s0190
Salix purpurea
SapurV1A.0292s0190
I
0.814
F775_00917
Aegilops tauschii
F775_00917
I
0.794
GSMUA_Achr11G02150_001
Musa acuminata
GSMUA_Achr11G02150_001
N
0.794
GLYMA07G16290
Glycine max
GLYMA07G16290
I
0.766
MTR_7g063220
Medicago truncatula
MTR_7g063220
I
0.766
POPTR_0016s10480
Populus trichocarpa
POPTR_0016s10480
I
0.766
PRUPE_ppb012667mg
Prunus persica
PRUPE_ppb012667mg
N
0.766
Pm002649
Prunus mume
Pm002649
N
0.766
mgf024356m
Mimulus guttatus
mgf024356m
I
0.766
chr1.CM0147.870.nc
Lotus japonicus
chr1.CM0147.870.nc
I
0.766
TCM_021876
Theobroma cacao
TCM_021876
N
0.764
28345.m000111
Ricinus communis
28345.m000111
N
0.764
cassava4410.m1
Manihot esculenta
cassava4410.m1
N
0.764
Aquca_003_00162
Aquilegia coerulea
Aquca_003_00162
N
0.764
Gorai.002G256500
Gossypium raimondii
Gorai.002G256500
N
0.764