CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R015265
(
Geospiza fortis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gfo_R015265
T135872_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KLF11
M00242_2.00
Homo sapiens
MCGCCCCC
GGGGGCGK
PBM
Barrera et al.(2016)
KLF11_REF
0.782
0.884
KLF11
M04554_2.00
Homo sapiens
VMCMCRCCCMYNMCACGCCCMC
GKGGGCGTGKNRKGGGYGKGKB
SELEX
Yin et al.(2017)
KLF11_eDBD_HT-SELEX
0.782
0.884
KLF11
M10261_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FKLF_Q5
0.782
0.884
KLF11
M00241_2.00
Homo sapiens
MCGCCCMC
GKGGGCGK
PBM
Barrera et al.(2016)
KLF11_R402Q
0.782
0.884
KLF11
M04555_2.00
Homo sapiens
VMCMCRCCCHYNHCACGCCCMC
GKGGGCGTGDNRDGGGYGKGKB
SELEX
Yin et al.(2017)
KLF11_eDBD_Methyl-HT-SELEX
0.782
0.884
KLF10
M04489_2.00
Homo sapiens
RMCACRCCCMYVHCACRCCCMC
GKGGGYGTGDBRKGGGYGTGKY
SELEX
Yin et al.(2017)
KLF10_eDBD_HT-SELEX
0.777
0.797
KLF10
M08246_2.00
Homo sapiens
RCCMCRCCCH
DGGGYGKGGY
ChIP-seq
Najafabadi et al.(2015b)
KLF10
0.777
0.797
KLF10
M08317_2.00
Homo sapiens
SMCMCRCCCMYNBSN
NSVNRKGGGYGKGKS
ChIP-seq
Schmitges et al.(2016)
Q13118.MEME
0.777
0.797
KLF10
M10228_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TIEG1_Q6
0.777
0.797
KLF10
M04490_2.00
Homo sapiens
RMCACRCCCMYGMCACRCCCHC
GDGGGYGTGKCRKGGGYGTGKY
SELEX
Yin et al.(2017)
KLF10_eDBD_Methyl-HT-SELEX
0.777
0.797
KLF13
M02903_2.00
Homo sapiens
DDRMCACGCCCCYTTNDK
MHNAARGGGGCGTGKYHH
SELEX
Jolma et al.(2013)
KLF13_1
0.760
0.768
KLF13
M04537_2.00
Homo sapiens
NRCCACRCCCMCN
NGKGGGYGTGGYN
SELEX
Yin et al.(2017)
KLF13_eDBD_HT-SELEX
0.760
0.768
KLF13
M04539_2.00
Homo sapiens
NRCCACRCCCMYN
NRKGGGYGTGGYN
SELEX
Yin et al.(2017)
KLF13_FL_HT-SELEX
0.760
0.768
KLF13
M04538_2.00
Homo sapiens
NRCCACRCCCMCH
DGKGGGYGTGGYN
SELEX
Yin et al.(2017)
KLF13_eDBD_Methyl-HT-SELEX
0.760
0.768
KLF13
M04540_2.00
Homo sapiens
NRCCACRCCCMCH
DGKGGGYGTGGYN
SELEX
Yin et al.(2017)
KLF13_FL_Methyl-HT-SELEX
0.760
0.768
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R015265
C2H2 ZF
394
418
YVCDFPGCKKTYFKSSHLKAHLRTH
Gfo_R015265
C2H2 ZF
424
448
FSCNWEGCDKKFARSDELSRHRRTH
Gfo_R015265
C2H2 ZF
454
476
FSCPVCERRFMRSDHLTKHTRCH
Links
Other
C2H2 ZF
family TFs
Other
Geospiza fortis
TFs
170 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aan_R003929
Calypte anna
Aan_R003929
I
0.793
Aan_R015091
Calypte anna
Aan_R015091
I
0.768
Aan_R015392
Calypte anna
Aan_R015392
I
0.801
Afo_R002224
Aptenodytes forsteri
Afo_R002224
I
0.777
Afo_R014961
Aptenodytes forsteri
Afo_R014961
I
0.768
Afo_R015752
Aptenodytes forsteri
Afo_R015752
I
0.801
Alligator_sinensis_CCG001309.1
Alligator sinensis
Alligator_sinensis_CCG001309.1
I
0.777
Alligator_sinensis_CCG017491.1
Alligator sinensis
Alligator_sinensis_CCG017491.1
I
0.801
Brh_R008046
Buceros rhinoceros
Brh_R008046
I
0.777
Brh_R012523
Buceros rhinoceros
Brh_R012523
I
0.798
Cmyd_10010871
Chelonia mydas
Cmyd_10010871
I
0.777
DAPPUDRAFT_312628
Daphnia pulex
DAPPUDRAFT_312628
I
0.781
ENSAMEG00000011355
Ailuropoda melanoleuca
ENSAMEG00000011355
I
0.785
ENSAMEG00000014775
Ailuropoda melanoleuca
ENSAMEG00000014775
I
0.777
ENSAMXG00000004794
Astyanax mexicanus
ENSAMXG00000004794
I
0.798
ENSAMXG00000011768
Astyanax mexicanus
ENSAMXG00000011768
I
0.801
ENSAPLG00000004145
Anas platyrhynchos
ENSAPLG00000004145
I
0.793
ENSAPLG00000009146
Anas platyrhynchos
ENSAPLG00000009146
I
0.801
ENSBTAP00000019142-D1
Bos grunniens
ENSBTAP00000019142-D1
I
0.777
ENSCSAG00000006853
Chlorocebus sabaeus
ENSCSAG00000006853
I
0.760
ENSCSAG00000007163
Chlorocebus sabaeus
ENSCSAG00000007163
I
0.782
ENSCSAG00000011934
Chlorocebus sabaeus
ENSCSAG00000011934
I
0.777
ENSDORG00000012974
Dipodomys ordii
ENSDORG00000012974
I
0.766
ENSFALG00000005917
Ficedula albicollis
ENSFALG00000005917
I
0.777
ENSFALG00000006648
Ficedula albicollis
ENSFALG00000006648
I
0.817
ENSGALG00000016063
Gallus gallus
ENSGALG00000016063
I
0.793
ENSGALG00000026590
Gallus gallus
ENSGALG00000026590
I
0.760
ENSGMOG00000003463
Gadus morhua
ENSGMOG00000003463
I
0.795
ENSGMOG00000011144
Gadus morhua
ENSGMOG00000011144
I
0.794
ENSLACG00000010260
Latimeria chalumnae
ENSLACG00000010260
I
0.801
ENSLACG00000013560
Latimeria chalumnae
ENSLACG00000013560
I
0.777
ENSLOCG00000016837
Lepisosteus oculatus
ENSLOCG00000016837
I
0.795
ENSMEUG00000000662
Macropus eugenii
ENSMEUG00000000662
I
0.777
ENSMEUG00000015111
Macropus eugenii
ENSMEUG00000015111
I
0.762
ENSMICG00000002285
Microcebus murinus
ENSMICG00000002285
I
0.777
ENSMPUG00000013287
Mustela putorius furo
ENSMPUG00000013287
I
0.781
ENSMPUG00000015132
Mustela putorius furo
ENSMPUG00000015132
I
0.777
ENSNLEG00000003646
Nomascus leucogenys
ENSNLEG00000003646
I
0.777
ENSNLEG00000007555
Nomascus leucogenys
ENSNLEG00000007555
I
0.760
ENSNLEG00000013701
Nomascus leucogenys
ENSNLEG00000013701
I
0.798
ENSOARG00000015319
Ovis aries
ENSOARG00000015319
I
0.798
ENSOARG00000016409
Ovis aries
ENSOARG00000016409
I
0.760
ENSOARG00000017131
Ovis aries
ENSOARG00000017131
I
0.777
ENSOGAG00000026529
Otolemur garnettii
ENSOGAG00000026529
I
0.760
ENSONIG00000003704
Oreochromis niloticus
ENSONIG00000003704
I
0.798
ENSONIG00000016428
Oreochromis niloticus
ENSONIG00000016428
I
0.760
ENSONIG00000018808
Oreochromis niloticus
ENSONIG00000018808
I
0.795
ENSORLG00000003032
Oryzias latipes
ENSORLG00000003032
N
0.764
ENSP00000285407
Macaca fascicularis
ENSP00000285407
I
0.777
ENSP00000307023
Macaca fascicularis
ENSP00000307023
I
0.782
ENSP00000307023-D1
Bos grunniens
ENSP00000307023-D1
I
0.782
ENSPANG00000008644
Papio anubis
ENSPANG00000008644
I
0.782
ENSPANG00000009227
Papio anubis
ENSPANG00000009227
I
0.777
ENSPFOG00000005130
Poecilia formosa
ENSPFOG00000005130
I
0.781
ENSPFOG00000013334
Poecilia formosa
ENSPFOG00000013334
I
0.760
ENSPFOG00000015744
Poecilia formosa
ENSPFOG00000015744
I
0.795
ENSPMAG00000001515
Petromyzon marinus
ENSPMAG00000001515
I
0.758
ENSPPYG00000012659
Pongo abelii
ENSPPYG00000012659
I
0.782
ENSPPYG00000018800
Pongo abelii
ENSPPYG00000018800
I
0.777
ENSPSIG00000010816
Pelodiscus sinensis
ENSPSIG00000010816
I
0.785
ENSPSIG00000012678
Pelodiscus sinensis
ENSPSIG00000012678
I
0.777
ENSSHAG00000005846
Sarcophilus harrisii
ENSSHAG00000005846
I
0.782
ENSSHAG00000018290
Sarcophilus harrisii
ENSSHAG00000018290
I
0.777
ENSSSCG00000027819
Sus scrofa
ENSSSCG00000027819
I
0.777
ENSSTOG00000002442
Ictidomys tridecemlineatus
ENSSTOG00000002442
I
0.782
ENSSTOG00000022758
Ictidomys tridecemlineatus
ENSSTOG00000022758
I
0.760
ENSSTOG00000027022
Ictidomys tridecemlineatus
ENSSTOG00000027022
I
0.777
ENSTSYG00000003347
Tarsius syrichta
ENSTSYG00000003347
I
0.777
ENSXMAG00000002425
Xiphophorus maculatus
ENSXMAG00000002425
I
0.760
ENSXMAG00000009885
Xiphophorus maculatus
ENSXMAG00000009885
I
0.795
ENSXMAG00000010947
Xiphophorus maculatus
ENSXMAG00000010947
I
0.782
estExt_fgenesh2_pg.C_5760011
Branchiostoma floridae
estExt_fgenesh2_pg.C_5760011
I
0.774
Gfo_R006024
Geospiza fortis
Gfo_R006024
I
0.777
Gfo_R008822
Geospiza fortis
Gfo_R008822
I
0.768
KLF10
Anolis carolinensis
ENSACAG00000009177
I
0.793
KLF10
Bos taurus
ENSBTAG00000014396
I
0.777
KLF10
Canis familiaris
ENSCAFG00000000638
I
0.777
KLF10
Callithrix jacchus
ENSCJAG00000016069
I
0.777
KLF10
Cavia porcellus
ENSCPOG00000011105
I
0.777
KLF10
Dasypus novemcinctus
ENSDNOG00000017020
I
0.777
Klf10
Dipodomys ordii
ENSDORG00000015269
I
0.777
KLF10
Equus caballus
ENSECAG00000013153
I
0.777
KLF10
Erinaceus europaeus
ENSEEUG00000009077
I
0.777
KLF10
Echinops telfairi
ENSETEG00000016283
I
0.777
KLF10
Felis catus
ENSFCAG00000026958
I
0.777
KLF10
Homo sapiens
ENSG00000155090
D
0.777
KLF10
Gasterosteus aculeatus
ENSGACG00000004632
I
0.760
KLF10
Gorilla gorilla
ENSGGOG00000015206
I
0.777
KLF10
Loxodonta africana
ENSLAFG00000000037
I
0.777
KLF10
Meleagris gallopavo
ENSMGAG00000012319
I
0.793
KLF10
Myotis lucifugus
ENSMLUG00000012969
I
0.777
KLF10
Macaca mulatta
ENSMMUG00000018815
I
0.777
KLF10
Monodelphis domestica
ENSMODG00000005896
I
0.777
Klf10
Mus musculus
ENSMUSG00000037465
I
0.777
KLF10
Ornithorhynchus anatinus
ENSOANG00000013800
I
0.777
KLF10
Oryctolagus cuniculus
ENSOCUG00000016141
I
0.777
KLF10
Otolemur garnettii
ENSOGAG00000014528
I
0.777
KLF10
Ochotona princeps
ENSOPRG00000006656
I
0.777
KLF10
Pan troglodytes
ENSPTRG00000020484
I
0.777
KLF10
Pteropus vampyrus
ENSPVAG00000013271
I
0.777
Klf10
Rattus norvegicus
ENSRNOG00000006118
I
0.777
KLF10
Sus scrofa
ENSSSCG00000027480
I
0.777
KLF10
Taeniopygia guttata
ENSTGUG00000012120
I
0.784
KLF10
Tursiops truncatus
ENSTTRG00000000383
I
0.777
klf10
Xenopus tropicalis
XB-GENE-854761
I
0.793
klf10.L
Xenopus laevis
XB-GENE-17335049
I
0.793
klf10.S
Xenopus laevis
XB-GENE-866571
I
0.793
KLF11
Anolis carolinensis
ENSACAG00000000128
I
0.782
KLF11
Bos taurus
ENSBTAG00000046218
I
0.782
KLF11
Canis familiaris
ENSCAFG00000003405
I
0.769
KLF11
Dasypus novemcinctus
ENSDNOG00000035689
I
0.782
KLF11
Equus caballus
ENSECAG00000015820
I
0.798
KLF11
Erinaceus europaeus
ENSEEUG00000006894
I
0.782
KLF11
Echinops telfairi
ENSETEG00000002915
I
0.798
KLF11
Felis catus
ENSFCAG00000030965
I
0.782
KLF11
Homo sapiens
ENSG00000172059
D
0.782
KLF11
Gasterosteus aculeatus
ENSGACG00000001487
I
0.795
KLF11
Gasterosteus aculeatus
ENSGACG00000008836
I
0.798
KLF11
Gallus gallus
ENSGALG00000016440
I
0.801
KLF11
Gorilla gorilla
ENSGGOG00000012494
I
0.782
KLF11
Loxodonta africana
ENSLAFG00000032182
I
0.782
KLF11
Meleagris gallopavo
ENSMGAG00000014008
I
0.801
KLF11
Myotis lucifugus
ENSMLUG00000002295
I
0.798
KLF11
Macaca mulatta
ENSMMUG00000002054
I
0.782
KLF11
Monodelphis domestica
ENSMODG00000014758
I
0.782
Klf11
Mus musculus
ENSMUSG00000020653
I
0.782
KLF11
Ornithorhynchus anatinus
ENSOANG00000007790
I
0.782
KLF11
Oryctolagus cuniculus
ENSOCUG00000003809
I
0.782
KLF11
Otolemur garnettii
ENSOGAG00000026035
I
0.766
KLF11
Ochotona princeps
ENSOPRG00000013425
I
0.782
KLF11
Oryzias latipes
ENSORLG00000015191
I
0.798
KLF11
Oryzias latipes
ENSORLG00000018102
I
0.795
KLF11
Procavia capensis
ENSPCAG00000011366
I
0.782
KLF11
Pan troglodytes
ENSPTRG00000011645
I
0.782
KLF11
Pteropus vampyrus
ENSPVAG00000017463
I
0.765
Klf11
Rattus norvegicus
ENSRNOG00000054259
I
0.782
KLF11
Sorex araneus
ENSSARG00000004298
I
0.798
KLF11
Tupaia belangeri
ENSTBEG00000008268
I
0.794
KLF11
Taeniopygia guttata
ENSTGUG00000013041
I
0.821
KLF11
Tetraodon nigroviridis
ENSTNIG00000000881
I
0.795
KLF11
Takifugu rubripes
ENSTRUG00000008202
I
0.795
KLF11
Takifugu rubripes
ENSTRUG00000013598
I
0.798
KLF11
Tursiops truncatus
ENSTTRG00000017207
I
0.782
klf11
Xenopus tropicalis
XB-GENE-956858
I
0.801
klf11.L
Xenopus laevis
XB-GENE-956865
I
0.801
klf11.S
Xenopus laevis
XB-GENE-17345045
I
0.801
klf11a
Danio rerio
ENSDARG00000030844
I
0.798
klf11b
Danio rerio
ENSDARG00000013794
I
0.801
KLF13
Callithrix jacchus
ENSCJAG00000017617
I
0.760
KLF13
Echinops telfairi
ENSETEG00000014330
I
0.763
KLF13
Homo sapiens
ENSG00000169926
D
0.760
KLF13
Meleagris gallopavo
ENSMGAG00000004699
I
0.760
KLF13
Monodelphis domestica
ENSMODG00000011740
I
0.760
Klf13
Mus musculus
ENSMUSG00000052040
I
0.760
KLF13
Procavia capensis
ENSPCAG00000009647
I
0.760
KLF13
Pan troglodytes
ENSPTRG00000006860
I
0.760
KLF13
Sus scrofa
ENSSSCG00000026006
I
0.760
KLF13
Taeniopygia guttata
ENSTGUG00000005470
I
0.768
klf13
Xenopus tropicalis
XB-GENE-479837
I
0.760
Myotis_brandtii_KLF10_10032162
Myotis brandtii
Myotis_brandtii_KLF10_10032162
I
0.777
Myotis_brandtii_KLF11_10020832
Myotis brandtii
Myotis_brandtii_KLF11_10020832
I
0.798
Ogr04283
Ophisaurus gracilis
Ogr04283
I
0.766
PHUM248360
Pediculus humanus
PHUM248360
I
0.771
Pvit_03838
Pogona vitticeps
Pvit_03838
I
0.793
Pvit_14441
Pogona vitticeps
Pvit_14441
I
0.782
SPU_026418
Strongylocentrotus purpuratus
SPU_026418
I
0.758
Tal_R007530
Tyto alba
Tal_R007530
I
0.777
Tal_R011003
Tyto alba
Tal_R011003
I
0.768
Tal_R013154
Tyto alba
Tal_R013154
I
0.801
TriadG27838
Trichoplax adhaerens
TriadG27838
I
0.760