CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava22028.m1
(
Manihot esculenta
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
cassava22028.m1
T137839_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RBE
M01858_2.00
Arabidopsis thaliana
NNNASWN
NWSTNNN
PBM
Weirauch et al.(2014)
pTH7538
0.769
0.870
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava22028.m1
C2H2 ZF
19
41
YFCNFCGREFRSAQALGGHMNVH
Links
Other
C2H2 ZF
family TFs
Other
Manihot esculenta
TFs
143 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AT4G17810
Arabidopsis thaliana
AT4G17810
I
0.779
Bo1g017920
Brassica oleracea
Bo1g017920
I
0.779
Bra013257
Brassica rapa
Bra013257
I
0.779
GLYMA11G34285
Glycine max
GLYMA11G34285
I
0.779
Cla021878
Citrullus lanatus
Cla021878
I
0.779
Cucsa.255130
Cucumis sativus
Cucsa.255130
I
0.779
Bostr.30275s0246
Boechera stricta
Bostr.30275s0246
I
0.779
Cagra.3356s0074
Capsella grandiflora
Cagra.3356s0074
I
0.779
Carubv10006881m.g
Capsella rubella
Carubv10006881m.g
I
0.779
Lus10000705.g
Linum usitatissimum
Lus10000705.g
I
0.777
Lus10024875.g
Linum usitatissimum
Lus10024875.g
I
0.777
e_gw1.14.264.1
Physcomitrella patens
e_gw1.14.264.1
I
0.776
e_gw1.186.49.1
Physcomitrella patens
e_gw1.186.49.1
I
0.776
Al_scaffold_0409_3
Arabidopsis lyrata
Al_scaffold_0409_3
I
0.769
ZFP11
Arabidopsis thaliana
AT2G42410
I
0.769
SUP
Arabidopsis thaliana
AT3G23130
I
0.769
RBE
Arabidopsis thaliana
AT5G06070
D
0.769
BGIOSGA018378
Oryza indica
BGIOSGA018378
I
0.769
BGIOSGA033510
Oryza indica
BGIOSGA033510
I
0.769
Bo1g102390
Brassica oleracea
Bo1g102390
I
0.769
Bo3g003640
Brassica oleracea
Bo3g003640
I
0.769
Bo9g176590
Brassica oleracea
Bo9g176590
I
0.769
Bra005874
Brassica rapa
Bra005874
I
0.769
Bra009160
Brassica rapa
Bra009160
I
0.769
Bra023759
Brassica rapa
Bra023759
I
0.769
SUP
Arabidopsis lyrata
fgenesh2_kg.3__2524__AT3G23130.1
I
0.769
RBE
Arabidopsis lyrata
fgenesh2_kg.6__542__AT5G06070.1
I
0.769
GRMZM2G000126
Zea mays
GRMZM2G000126
I
0.769
GSMUA_Achr7G26850_001
Musa acuminata
GSMUA_Achr7G26850_001
I
0.769
LPERR05G08090
Leersia perrieri
LPERR05G08090
I
0.769
MLOC_76482
Hordeum vulgare
MLOC_76482
I
0.769
MTR_1g070265
Medicago truncatula
MTR_1g070265
I
0.769
OB02G10110
Oryza brachyantha
OB02G10110
I
0.769
OB05G18710
Oryza brachyantha
OB05G18710
I
0.769
OBART05G10090
Oryza barthii
OBART05G10090
I
0.769
OBART11G23770
Oryza barthii
OBART11G23770
I
0.769
OGLUM05G10360
Oryza glumaepatula
OGLUM05G10360
I
0.769
OGLUM11G22950
Oryza glumaepatula
OGLUM11G22950
I
0.769
OLONG_005038
Oryza longistaminata
OLONG_005038
I
0.769
OLONG_023754
Oryza longistaminata
OLONG_023754
I
0.769
OMERI07G13080
Oryza meridionalis
OMERI07G13080
I
0.769
ONIVA06G26970
Oryza nivara
ONIVA06G26970
I
0.769
ONIVA11G23290
Oryza nivara
ONIVA11G23290
I
0.769
OPUNC05G08760
Oryza punctata
OPUNC05G08760
I
0.769
OPUNC11G05640
Oryza punctata
OPUNC11G05640
I
0.769
ORGLA05G0088100
Oryza glaberrima
ORGLA05G0088100
I
0.769
ORUFI05G10920
Oryza rufipogon
ORUFI05G10920
I
0.769
ORUFI11G25670
Oryza rufipogon
ORUFI11G25670
I
0.769
OS05G0286100
Oryza sativa
OS05G0286100
I
0.769
OS11G0707300
Oryza sativa
OS11G0707300
I
0.769
PGSC0003DMG400017271
Solanum tuberosum
PGSC0003DMG400017271
I
0.769
PGSC0003DMG400040225
Solanum tuberosum
PGSC0003DMG400040225
I
0.769
POPTR_0002s04260
Populus trichocarpa
POPTR_0002s04260
I
0.769
POPTR_0008s16390
Populus trichocarpa
POPTR_0008s16390
I
0.769
POPTR_0010s08530
Populus trichocarpa
POPTR_0010s08530
I
0.769
PRUPE_ppa015007mg
Prunus persica
PRUPE_ppa015007mg
I
0.769
scaffold_403098.1
Arabidopsis lyrata
scaffold_403098.1
I
0.769
Si019050m.g
Setaria italica
Si019050m.g
I
0.769
Si024070m.g
Setaria italica
Si024070m.g
I
0.769
Solyc06g053720.1
Solanum lycopersicum
Solyc06g053720.1
I
0.769
Solyc09g089590.1
Solanum lycopersicum
Solyc09g089590.1
I
0.769
TCM_021875
Theobroma cacao
TCM_021875
I
0.769
Traes_1AL_80D0BD0DC
Triticum aestivum
Traes_1AL_80D0BD0DC
I
0.769
Traes_1BL_4026DC5011
Triticum aestivum
Traes_1BL_4026DC5011
I
0.769
TRIUR3_03721
Triticum urartu
TRIUR3_03721
I
0.769
TRIUR3_04794
Triticum urartu
TRIUR3_04794
I
0.769
VIT_05s0049g00070
Vitis vinifera
VIT_05s0049g00070
I
0.769
VIT_05s0049g00080
Vitis vinifera
VIT_05s0049g00080
I
0.769
Cla008944
Citrullus lanatus
Cla008944
I
0.769
Pm009420
Prunus mume
Pm009420
I
0.769
29603.m000536
Ricinus communis
29603.m000536
I
0.769
cassava14614.m1
Manihot esculenta
cassava14614.m1
I
0.769
cassava3359.m1
Manihot esculenta
cassava3359.m1
I
0.769
cassava40050.m1
Manihot esculenta
cassava40050.m1
I
0.769
Cucsa.321760
Cucumis sativus
Cucsa.321760
I
0.769
Bostr.13129s0367
Boechera stricta
Bostr.13129s0367
I
0.769
Bostr.19424s0332
Boechera stricta
Bostr.19424s0332
I
0.769
Bostr.25993s0539
Boechera stricta
Bostr.25993s0539
I
0.769
Cagra.2117s0055
Capsella grandiflora
Cagra.2117s0055
I
0.769
Cagra.2636s0028
Capsella grandiflora
Cagra.2636s0028
I
0.769
Cagra.3462s0001
Capsella grandiflora
Cagra.3462s0001
I
0.769
Carubv10002935m.g
Capsella rubella
Carubv10002935m.g
I
0.769
Carubv10016073m.g
Capsella rubella
Carubv10016073m.g
I
0.769
Carubv10024766m.g
Capsella rubella
Carubv10024766m.g
I
0.769
Ciclev10006961m.g
Citrus clementina
Ciclev10006961m.g
I
0.769
evm.TU.supercontig_44.99
Carica papaya
evm.TU.supercontig_44.99
I
0.769
gene08240-v1.0-hybrid
Fragaria vesca
gene08240-v1.0-hybrid
I
0.769
Gorai.005G047800
Gossypium raimondii
Gorai.005G047800
I
0.769
Gorai.006G247700
Gossypium raimondii
Gorai.006G247700
I
0.769
Gorai.008G226800
Gossypium raimondii
Gorai.008G226800
I
0.769
Gorai.012G106300
Gossypium raimondii
Gorai.012G106300
I
0.769
Lus10022206.g
Linum usitatissimum
Lus10022206.g
I
0.769
MDP0000225209
Malus domestica
MDP0000225209
I
0.769
orange1.1g041626m.g
Citrus sinensis
orange1.1g041626m.g
I
0.769
Pavir.Aa03593
Panicum virgatum
Pavir.Aa03593
I
0.769
Pavir.Ab00024
Panicum virgatum
Pavir.Ab00024
I
0.769
SapurV1A.0006s1030
Salix purpurea
SapurV1A.0006s1030
I
0.769
SapurV1A.0007s0790
Salix purpurea
SapurV1A.0007s0790
I
0.769
SapurV1A.0292s0200
Salix purpurea
SapurV1A.0292s0200
I
0.769
SapurV1A.0378s0150
Salix purpurea
SapurV1A.0378s0150
I
0.769
Thhalv10015420m.g
Eutrema salsugineum
Thhalv10015420m.g
I
0.769
Thhalv10017870m.g
Eutrema salsugineum
Thhalv10017870m.g
I
0.769
Thhalv10021992m.g
Eutrema salsugineum
Thhalv10021992m.g
I
0.769
LjSGA_038753.2
Lotus japonicus
LjSGA_038753.2
I
0.769
PDK_20s1313421g001
Phoenix dactylifera
PDK_20s1313421g001
I
0.769
PDK_20s1360411g001
Phoenix dactylifera
PDK_20s1360411g001
I
0.769
cassava38976.m1
Manihot esculenta
cassava38976.m1
N
0.768
GLYMA12G35930
Glycine max
GLYMA12G35930
I
0.767
GLYMA13G34450
Glycine max
GLYMA13G34450
I
0.767
Ca_12901
Cicer arietinum
Ca_12901
I
0.767
mg013419m
Mimulus guttatus
mg013419m
I
0.767
BRADI3G55760
Brachypodium distachyon
BRADI3G55760
I
0.766
F775_00917
Aegilops tauschii
F775_00917
I
0.766
GRMZM2G344974
Zea mays
GRMZM2G344974
I
0.766
OB02G44430
Oryza brachyantha
OB02G44430
I
0.766
Sb04g037590
Sorghum bicolor
Sb04g037590
I
0.766
Si019563m.g
Setaria italica
Si019563m.g
I
0.766
e_gw1.1.457.1
Physcomitrella patens
e_gw1.1.457.1
I
0.766
e_gw1.6.268.1
Physcomitrella patens
e_gw1.6.268.1
I
0.766
Pavir.Ab03315
Panicum virgatum
Pavir.Ab03315
I
0.766
BGIOSGA015610
Oryza indica
BGIOSGA015610
I
0.757
F775_21953
Aegilops tauschii
F775_21953
I
0.757
GLYMA12G06340
Glycine max
GLYMA12G06340
N
0.757
GRMZM2G137736
Zea mays
GRMZM2G137736
I
0.757
LPERR04G01660
Leersia perrieri
LPERR04G01660
I
0.757
MTR_4g064873
Medicago truncatula
MTR_4g064873
N
0.757
OB04G12040
Oryza brachyantha
OB04G12040
I
0.757
OBART04G02370
Oryza barthii
OBART04G02370
I
0.757
OGLUM04G02100
Oryza glumaepatula
OGLUM04G02100
I
0.757
OLONG_022667
Oryza longistaminata
OLONG_022667
I
0.757
OMERI04G02610
Oryza meridionalis
OMERI04G02610
I
0.757
ONIVA04G01910
Oryza nivara
ONIVA04G01910
I
0.757
ORUFI04G03150
Oryza rufipogon
ORUFI04G03150
I
0.757
OS04G0168100
Oryza sativa
OS04G0168100
I
0.757
Sb06g001730
Sorghum bicolor
Sb06g001730
I
0.757
Si011797m.g
Setaria italica
Si011797m.g
I
0.757
Cla008348
Citrullus lanatus
Cla008348
N
0.757
Cla016442
Citrullus lanatus
Cla016442
I
0.757
cassava32634.m1
Manihot esculenta
cassava32634.m1
N
0.757
Cucsa.117650
Cucumis sativus
Cucsa.117650
N
0.757
Cucsa.313240
Cucumis sativus
Cucsa.313240
I
0.757
Pavir.Gb02516
Panicum virgatum
Pavir.Gb02516
I
0.757
Pavir.J31403
Panicum virgatum
Pavir.J31403
I
0.757