cassava22193.valid.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava22193.valid.m1 T137840_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.807 0.933
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.807 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava22193.valid.m1 C2H2 ZF 251 273
cassava22193.valid.m1 C2H2 ZF 272 303

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
STOP1 Arabidopsis thaliana AT1G34370 D 0.807
Bo8g027000 Brassica oleracea Bo8g027000 I 0.807
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.807
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.807
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.807
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.807
Ca_04300 Cicer arietinum Ca_04300 I 0.807
Pm022201 Prunus mume Pm022201 I 0.807
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.807
mgf000060m Mimulus guttatus mgf000060m I 0.807
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.807
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.807
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.807
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.807
MDP0000141403 Malus domestica MDP0000141403 I 0.807
MDP0000199559 Malus domestica MDP0000199559 I 0.807
MDP0000551046 Malus domestica MDP0000551046 I 0.807
MDP0000807856 Malus domestica MDP0000807856 I 0.807
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.807
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.807
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.807
PK23301.1 Cannabis sativa PK23301.1 I 0.807
Cla016623 Citrullus lanatus Cla016623 I 0.801
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.801
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.798
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.798
TCM_036719 Theobroma cacao TCM_036719 I 0.798
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.798
PGSC0003DMG400026081 Solanum tuberosum PGSC0003DMG400026081 I 0.793
Solyc06g065440.1 Solanum lycopersicum Solyc06g065440.1 I 0.793
BGIOSGA004888 Oryza indica BGIOSGA004888 I 0.784
Bra040971 Brassica rapa Bra040971 I 0.784
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I 0.784
F775_04088 Aegilops tauschii F775_04088 I 0.784
GRMZM2G075956 Zea mays GRMZM2G075956 I 0.784
GRMZM2G129428 Zea mays GRMZM2G129428 I 0.784
LPERR01G33350 Leersia perrieri LPERR01G33350 I 0.784
MLOC_10987 Hordeum vulgare MLOC_10987 I 0.784
OB01G47470 Oryza brachyantha OB01G47470 I 0.784
OBART01G38810 Oryza barthii OBART01G38810 I 0.784
OLONG_020555 Oryza longistaminata OLONG_020555 I 0.784
ONIVA01G43630 Oryza nivara ONIVA01G43630 I 0.784
OPUNC01G37530 Oryza punctata OPUNC01G37530 I 0.784
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I 0.784
ORUFI01G42150 Oryza rufipogon ORUFI01G42150 I 0.784
OS01G0871200 Oryza sativa OS01G0871200 I 0.784
Sb03g041170 Sorghum bicolor Sb03g041170 I 0.784
Si001053m.g Setaria italica Si001053m.g I 0.784
Traes_3AL_00FAACD5D Triticum aestivum Traes_3AL_00FAACD5D I 0.784
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I 0.784
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I 0.784
TRIUR3_13796 Triticum urartu TRIUR3_13796 I 0.784
Ciclev10000850m.g Citrus clementina Ciclev10000850m.g I 0.784
orange1.1g009831m.g Citrus sinensis orange1.1g009831m.g I 0.784
Pavir.J14096 Panicum virgatum Pavir.J14096 I 0.784
LPERR03G34390 Leersia perrieri LPERR03G34390 I 0.783
OB03G47410 Oryza brachyantha OB03G47410 I 0.783
Sb01g001950 Sorghum bicolor Sb01g001950 I 0.783
Si036555m.g Setaria italica Si036555m.g I 0.783
Pavir.Ia00191 Panicum virgatum Pavir.Ia00191 I 0.783
Pavir.J01834 Panicum virgatum Pavir.J01834 I 0.783
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.778
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.778
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.778
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.778
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.778
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.778
Gorai.006G131700 Gossypium raimondii Gorai.006G131700 I 0.774
MDP0000453148 Malus domestica MDP0000453148 I 0.774
SELMODRAFT_48276 Selaginella moellendorffii SELMODRAFT_48276 N 0.762
SELMODRAFT_58353 Selaginella moellendorffii SELMODRAFT_58353 N 0.762
Lus10009435.g Linum usitatissimum Lus10009435.g I 0.760