fgenesh2_pg.scaffold_78000088 (Physcomitrella patens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 fgenesh2_pg.scaffold_78000088 T139671_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_191000049
M01473_2.00 		Physcomitrella patens
NNNSCGCCRN
NYGGCGSNNN		 PBM
Najafabadi et al.(2015a)
pTH11165 		0.773 0.821
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_78000088 C2H2 ZF 247 271
fgenesh2_pg.scaffold_78000088 C2H2 ZF 302 325
fgenesh2_pg.scaffold_78000088 C2H2 ZF 354 379

Links

Other C2H2 ZF family TFs
Other Physcomitrella patens TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_pg.C_3030026 Physcomitrella patens estExt_fgenesh1_pg.C_3030026 I 0.773
estExt_fgenesh1_pg.C_330060 Physcomitrella patens estExt_fgenesh1_pg.C_330060 I 0.773
estExt_fgenesh1_pg.C_4070009 Physcomitrella patens estExt_fgenesh1_pg.C_4070009 I 0.773
fgenesh1_pg.scaffold_191000049 Physcomitrella patens fgenesh1_pg.scaffold_191000049 D 0.773
fgenesh1_pg.scaffold_39000134 Physcomitrella patens fgenesh1_pg.scaffold_39000134 I 0.773