CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10001157m.g
(
Capsella rubella
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Carubv10001157m.g
T142691_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YY1
M01443_2.00
Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN
PBM
Najafabadi et al.(2015a)
pTH11160
0.804
0.957
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10001157m
C2H2 ZF
79
103
FLCSYEGCGKTFFDVSALRKHSHIH
Carubv10001157m
C2H2 ZF
108
132
YVCDHAGCGKKFLDSSKLKRHYLIH
Carubv10001157m
C2H2 ZF
138
162
FVCTYEGCGKAFSLDFNLRSHMKTH
Carubv10001157m
C2H2 ZF
168
193
HLCPYSGCGKRYAHEYKLKNHVANYH
Carubv10001157m
C2H2 ZF
230
255
YACPYEGCEKAYIHEYKLKLHLKREH
Links
Other
C2H2 ZF
family TFs
Other
Capsella rubella
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh2_kg.6__2821__AT4G06634.1
Arabidopsis lyrata
fgenesh2_kg.6__2821__AT4G06634.1
I
0.814
YY1
Arabidopsis thaliana
AT4G06634
D
0.804
Bostr.3877s0062
Boechera stricta
Bostr.3877s0062
I
0.814
Bo00829s040
Brassica oleracea
Bo00829s040
I
0.814
Bo3g023850
Brassica oleracea
Bo3g023850
I
0.813
Bra029186
Brassica rapa
Bra029186
I
0.813
Bra035726
Brassica rapa
Bra035726
I
0.814
Cagra.2657s0002
Capsella grandiflora
Cagra.2657s0002
I
0.827
Thhalv10028723m.g
Eutrema salsugineum
Thhalv10028723m.g
I
0.812