CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10009617m.g
(
Capsella rubella
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Carubv10009617m.g
T142712_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10009617m
C2H2 ZF
274
295
FSCGKCGKALAVKGDWRTHEKN
Carubv10009617m
C2H2 ZF
294
320
KNCGKLWYCTCGSDFKHKRSLKDHIRS
Links
Other
C2H2 ZF
family TFs
Other
Capsella rubella
TFs
131 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
WIP3
Arabidopsis thaliana
AT1G08290
N
0.827
BGIOSGA031001
Oryza indica
BGIOSGA031001
N
0.769
Bo5g008880
Brassica oleracea
Bo5g008880
N
0.817
Bo8g112550
Brassica oleracea
Bo8g112550
N
0.817
Bra018638
Brassica rapa
Bra018638
N
0.817
Bra031621
Brassica rapa
Bra031621
N
0.817
BRADI3G39820
Brachypodium distachyon
BRADI3G39820
N
0.769
BRADI4G33557
Brachypodium distachyon
BRADI4G33557
N
0.763
F775_14972
Aegilops tauschii
F775_14972
N
0.763
WIP3
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1000684
N
0.827
TT1
Arabidopsis lyrata
fgenesh2_kg.1__3606__AT1G34790.1
N
0.790
GLYMA08G16390
Glycine max
GLYMA08G16390
N
0.759
GLYMA11G19060
Glycine max
GLYMA11G19060
N
0.785
GLYMA12G09400
Glycine max
GLYMA12G09400
N
0.785
GLYMA12G30930
Glycine max
GLYMA12G30930
N
0.785
GLYMA12G36660
Glycine max
GLYMA12G36660
N
0.759
GLYMA13G01720
Glycine max
GLYMA13G01720
N
0.773
GLYMA13G27371
Glycine max
GLYMA13G27371
N
0.759
GLYMA13G39370
Glycine max
GLYMA13G39370
N
0.785
GLYMA14G35140
Glycine max
GLYMA14G35140
N
0.773
GLYMA15G42870
Glycine max
GLYMA15G42870
N
0.759
GRMZM2G071101
Zea mays
GRMZM2G071101
N
0.769
GRMZM2G084014
Zea mays
GRMZM2G084014
N
0.763
GRMZM2G445684
Zea mays
GRMZM2G445684
N
0.769
GSMUA_Achr3G03850_001
Musa acuminata
GSMUA_Achr3G03850_001
N
0.759
GSMUA_Achr4G01560_001
Musa acuminata
GSMUA_Achr4G01560_001
N
0.769
GSMUA_Achr9G12600_001
Musa acuminata
GSMUA_Achr9G12600_001
N
0.759
LPERR08G16620
Leersia perrieri
LPERR08G16620
N
0.769
LPERR09G10700
Leersia perrieri
LPERR09G10700
N
0.769
MLOC_2787
Hordeum vulgare
MLOC_2787
N
0.763
OB08G26650
Oryza brachyantha
OB08G26650
N
0.769
OBART08G19670
Oryza barthii
OBART08G19670
N
0.769
OGLUM08G20830
Oryza glumaepatula
OGLUM08G20830
N
0.769
OGLUM09G15150
Oryza glumaepatula
OGLUM09G15150
N
0.769
OMERI08G16450
Oryza meridionalis
OMERI08G16450
N
0.769
OMERI09G11270
Oryza meridionalis
OMERI09G11270
N
0.769
ONIVA08G21960
Oryza nivara
ONIVA08G21960
N
0.769
ONIVA09G15100
Oryza nivara
ONIVA09G15100
N
0.769
OPUNC08G17810
Oryza punctata
OPUNC08G17810
N
0.769
OPUNC09G12930
Oryza punctata
OPUNC09G12930
N
0.769
ORGLA08G0173000
Oryza glaberrima
ORGLA08G0173000
N
0.769
ORGLA09G0111700
Oryza glaberrima
ORGLA09G0111700
N
0.769
ORUFI09G15680
Oryza rufipogon
ORUFI09G15680
N
0.769
OS08G0504000
Oryza sativa
OS08G0504000
N
0.769
OS09G0485600
Oryza sativa
OS09G0485600
N
0.769
PGSC0003DMG400006808
Solanum tuberosum
PGSC0003DMG400006808
N
0.769
PGSC0003DMG400007112
Solanum tuberosum
PGSC0003DMG400007112
N
0.803
PGSC0003DMG400030803
Solanum tuberosum
PGSC0003DMG400030803
N
0.782
POPTR_0001s27490
Populus trichocarpa
POPTR_0001s27490
N
0.759
POPTR_0002s09840
Populus trichocarpa
POPTR_0002s09840
N
0.782
POPTR_0004s19460
Populus trichocarpa
POPTR_0004s19460
N
0.785
POPTR_0009s06700
Populus trichocarpa
POPTR_0009s06700
N
0.759
POPTR_0009s14590
Populus trichocarpa
POPTR_0009s14590
N
0.785
PRUPE_ppa023619mg
Prunus persica
PRUPE_ppa023619mg
N
0.785
Sb02g028220
Sorghum bicolor
Sb02g028220
N
0.763
Sb07g028010
Sorghum bicolor
Sb07g028010
N
0.769
Si013819m.g
Setaria italica
Si013819m.g
N
0.769
Si029897m.g
Setaria italica
Si029897m.g
N
0.763
Solyc01g087050.2
Solanum lycopersicum
Solyc01g087050.2
N
0.769
Solyc04g074320.1
Solanum lycopersicum
Solyc04g074320.1
N
0.782
TCM_005892
Theobroma cacao
TCM_005892
N
0.759
TCM_034881
Theobroma cacao
TCM_034881
N
0.773
TCM_041441
Theobroma cacao
TCM_041441
N
0.785
Traes_5BL_6888AE9CB
Triticum aestivum
Traes_5BL_6888AE9CB
N
0.763
Traes_5DL_51643AC9F
Triticum aestivum
Traes_5DL_51643AC9F
N
0.763
Traes_7AS_8054DC45D
Triticum aestivum
Traes_7AS_8054DC45D
N
0.763
TRIUR3_30490
Triticum urartu
TRIUR3_30490
N
0.763
DOT5
Vitis vinifera
VIT_01s0011g03100
N
0.763
WIP3
Vitis vinifera
VIT_06s0080g00270
N
0.785
TT1
Vitis vinifera
VIT_18s0001g05860
N
0.773
Ca_07051
Cicer arietinum
Ca_07051
N
0.785
Ca_16482
Cicer arietinum
Ca_16482
N
0.785
Ca_27078
Cicer arietinum
Ca_27078
N
0.773
Cla000184
Citrullus lanatus
Cla000184
N
0.792
Cla002714
Citrullus lanatus
Cla002714
N
0.763
Cla015481
Citrullus lanatus
Cla015481
N
0.759
Pm001374
Prunus mume
Pm001374
N
0.785
29908.m006047
Ricinus communis
29908.m006047
N
0.773
30055.m001542
Ricinus communis
30055.m001542
N
0.785
30061.m000294
Ricinus communis
30061.m000294
N
0.759
cassava13451.valid.m1
Manihot esculenta
cassava13451.valid.m1
N
0.785
cassava16214.m1
Manihot esculenta
cassava16214.m1
N
0.779
cassava39829.m1
Manihot esculenta
cassava39829.m1
N
0.759
cassava44390.m1
Manihot esculenta
cassava44390.m1
N
0.773
Cucsa.050260
Cucumis sativus
Cucsa.050260
N
0.759
Cucsa.065460
Cucumis sativus
Cucsa.065460
N
0.765
Cucsa.199850
Cucumis sativus
Cucsa.199850
N
0.792
Cucsa.248320
Cucumis sativus
Cucsa.248320
N
0.763
mgf022319m
Mimulus guttatus
mgf022319m
N
0.759
mgf022981m
Mimulus guttatus
mgf022981m
N
0.806
Aquca_004_00109
Aquilegia coerulea
Aquca_004_00109
N
0.803
Aquca_006_00227
Aquilegia coerulea
Aquca_006_00227
N
0.803
Aquca_040_00077
Aquilegia coerulea
Aquca_040_00077
N
0.803
Bostr.1040s0072
Boechera stricta
Bostr.1040s0072
N
0.790
Bostr.25219s0116
Boechera stricta
Bostr.25219s0116
N
0.821
Cagra.0764s0003
Capsella grandiflora
Cagra.0764s0003
N
0.790
Cagra.4395s0018
Capsella grandiflora
Cagra.4395s0018
N
0.827
Carubv10012266m.g
Capsella rubella
Carubv10012266m.g
N
0.790
Ciclev10003648m.g
Citrus clementina
Ciclev10003648m.g
N
0.773
Ciclev10028757m.g
Citrus clementina
Ciclev10028757m.g
N
0.785
Eucgr.B03870
Eucalyptus grandis
Eucgr.B03870
N
0.785
Eucgr.F00336
Eucalyptus grandis
Eucgr.F00336
N
0.782
evm.TU.contig_31438
Carica papaya
evm.TU.contig_31438
N
0.769
evm.TU.contig_35924
Carica papaya
evm.TU.contig_35924
N
0.785
evm.TU.supercontig_1.215
Carica papaya
evm.TU.supercontig_1.215
N
0.763
gene22042-v1.0-hybrid
Fragaria vesca
gene22042-v1.0-hybrid
N
0.779
Gorai.001G121700
Gossypium raimondii
Gorai.001G121700
N
0.785
Gorai.004G037000
Gossypium raimondii
Gorai.004G037000
N
0.759
Gorai.004G065400
Gossypium raimondii
Gorai.004G065400
N
0.759
Gorai.006G111400
Gossypium raimondii
Gorai.006G111400
N
0.785
Gorai.007G177300
Gossypium raimondii
Gorai.007G177300
N
0.759
Gorai.010G039600
Gossypium raimondii
Gorai.010G039600
N
0.773
Lus10004887.g
Linum usitatissimum
Lus10004887.g
N
0.809
Lus10020597.g
Linum usitatissimum
Lus10020597.g
N
0.809
Lus10029525.g
Linum usitatissimum
Lus10029525.g
N
0.769
Lus10033454.g
Linum usitatissimum
Lus10033454.g
N
0.773
Lus10039613.g
Linum usitatissimum
Lus10039613.g
N
0.769
MDP0000131949
Malus domestica
MDP0000131949
N
0.785
MDP0000300013
Malus domestica
MDP0000300013
N
0.785
MDP0000573922
Malus domestica
MDP0000573922
N
0.770
orange1.1g037179m.g
Citrus sinensis
orange1.1g037179m.g
N
0.773
orange1.1g039549m.g
Citrus sinensis
orange1.1g039549m.g
N
0.785
Pavir.Ba01731
Panicum virgatum
Pavir.Ba01731
N
0.763
Pavir.Fa00506
Panicum virgatum
Pavir.Fa00506
N
0.769
Pavir.Fb01879
Panicum virgatum
Pavir.Fb01879
N
0.769
SapurV1A.0080s0360
Salix purpurea
SapurV1A.0080s0360
N
0.785
SapurV1A.0219s0040
Salix purpurea
SapurV1A.0219s0040
N
0.785
Thhalv10008125m.g
Eutrema salsugineum
Thhalv10008125m.g
N
0.827
PK05257.1
Cannabis sativa
PK05257.1
N
0.779
chr3.CM1144.10.nc
Lotus japonicus
chr3.CM1144.10.nc
N
0.779
LjSGA_032817.1
Lotus japonicus
LjSGA_032817.1
N
0.773