Carubv10012266m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10012266m.g T142716_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012266m C2H2 ZF 222 243
Carubv10012266m C2H2 ZF 242 268

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A5JTT1_WHEAT Triticum aestivum A5JTT1_WHEAT D
ERF1A Arabidopsis thaliana AT4G17500 D
ERF115 Arabidopsis thaliana AT5G07310 D
ERF113 Arabidopsis thaliana AT5G13330 D
ERF2 Arabidopsis thaliana AT5G47220 D
ERF2_TOBAC Nicotiana tabacum ERF2_TOBAC D
ERF114 Arabidopsis thaliana AT5G61890 I
BGIOSGA005915 Oryza indica BGIOSGA005915 I
BGIOSGA014605 Oryza indica BGIOSGA014605 I
Bo1g017590 Brassica oleracea Bo1g017590 I
Bo2g008570 Brassica oleracea Bo2g008570 I
Bo2g011200 Brassica oleracea Bo2g011200 I
Bo2g132270 Brassica oleracea Bo2g132270 I
Bo2g161710 Brassica oleracea Bo2g161710 I
Bo3g004290 Brassica oleracea Bo3g004290 I
Bo3g109240 Brassica oleracea Bo3g109240 I
Bo8g049470 Brassica oleracea Bo8g049470 I
Bo9g175390 Brassica oleracea Bo9g175390 I
Bra005932 Brassica rapa Bra005932 I
Bra009272 Brassica rapa Bra009272 I
Bra021047 Brassica rapa Bra021047 I
Bra021048 Brassica rapa Bra021048 I
Bra022115 Brassica rapa Bra022115 I
Bra023404 Brassica rapa Bra023404 I
Bra028703 Brassica rapa Bra028703 I
Bra029302 Brassica rapa Bra029302 I
BRADI3G50490 Brachypodium distachyon BRADI3G50490 I
Rap2.6L Arabidopsis lyrata fgenesh2_kg.6__1285__AT5G13330.1 I
fgenesh2_kg.6__690__AT5G07310.1 Arabidopsis lyrata fgenesh2_kg.6__690__AT5G07310.1 I
ATERF-1 Arabidopsis lyrata fgenesh2_kg.7__2559__AT4G17500.1 I
ATERF2 Arabidopsis lyrata fgenesh2_kg.8__70__AT5G47220.1 I
GLYMA01G41520 Glycine max GLYMA01G41520 I
GLYMA02G07310 Glycine max GLYMA02G07310 I
GLYMA05G05180 Glycine max GLYMA05G05180 I
GLYMA06G17180 Glycine max GLYMA06G17180 I
GLYMA11G03910 Glycine max GLYMA11G03910 I
GLYMA16G05190 Glycine max GLYMA16G05190 I
GLYMA16G26320 Glycine max GLYMA16G26320 I
GLYMA17G15480 Glycine max GLYMA17G15480 I
GLYMA19G27790 Glycine max GLYMA19G27790 I
GRMZM2G016434 Zea mays GRMZM2G016434 I
GRMZM2G055180 Zea mays GRMZM2G055180 I
GRMZM2G080516 Zea mays GRMZM2G080516 I
GRMZM2G466044 Zea mays GRMZM2G466044 I
GSMUA_Achr11G20930_001 Musa acuminata GSMUA_Achr11G20930_001 I
GSMUA_Achr2G17810_001 Musa acuminata GSMUA_Achr2G17810_001 I
GSMUA_Achr5G21050_001 Musa acuminata GSMUA_Achr5G21050_001 I
GSMUA_Achr6G27040_001 Musa acuminata GSMUA_Achr6G27040_001 I
LPERR02G21460 Leersia perrieri LPERR02G21460 I
LPERR04G16740 Leersia perrieri LPERR04G16740 I
LPERR11G03740 Leersia perrieri LPERR11G03740 I
MTR_2g015050 Medicago truncatula MTR_2g015050 I
MTR_3g098580 Medicago truncatula MTR_3g098580 I
MTR_4g100380 Medicago truncatula MTR_4g100380 I
MTR_6g033255 Medicago truncatula MTR_6g033255 I
OGLUM02G26840 Oryza glumaepatula OGLUM02G26840 I
OGLUM04G20600 Oryza glumaepatula OGLUM04G20600 I
OMERI02G25760 Oryza meridionalis OMERI02G25760 I
OMERI04G17100 Oryza meridionalis OMERI04G17100 I
ONIVA02G28810 Oryza nivara ONIVA02G28810 I
ONIVA04G18900 Oryza nivara ONIVA04G18900 I
OPUNC02G24070 Oryza punctata OPUNC02G24070 I
OPUNC04G18300 Oryza punctata OPUNC04G18300 I
ORGLA02G0226500 Oryza glaberrima ORGLA02G0226500 I
ORGLA04G0177100 Oryza glaberrima ORGLA04G0177100 I
ORUFI02G27830 Oryza rufipogon ORUFI02G27830 I
ORUFI04G22230 Oryza rufipogon ORUFI04G22230 I
OS02G0654700 Oryza sativa OS02G0654700 I
OS04G0546800 Oryza sativa OS04G0546800 I
PGSC0003DMG400010750 Solanum tuberosum PGSC0003DMG400010750 I
PGSC0003DMG400016006 Solanum tuberosum PGSC0003DMG400016006 I
PGSC0003DMG400026260 Solanum tuberosum PGSC0003DMG400026260 I
POPTR_0001s15390 Populus trichocarpa POPTR_0001s15390 I
POPTR_0003s07910 Populus trichocarpa POPTR_0003s07910 I
POPTR_0003s15030 Populus trichocarpa POPTR_0003s15030 I
POPTR_0011s06010 Populus trichocarpa POPTR_0011s06010 I
POPTR_0012s11030 Populus trichocarpa POPTR_0012s11030 I
PRUPE_ppa008772mg Prunus persica PRUPE_ppa008772mg I
PRUPE_ppa009707mg Prunus persica PRUPE_ppa009707mg I
PRUPE_ppa010186mg Prunus persica PRUPE_ppa010186mg I
Sb04g033105 Sorghum bicolor Sb04g033105 I
Sb06g024355 Sorghum bicolor Sb06g024355 I
scaffold_802838.1 Arabidopsis lyrata scaffold_802838.1 I
SELMODRAFT_68470 Selaginella moellendorffii SELMODRAFT_68470 I
SELMODRAFT_73164 Selaginella moellendorffii SELMODRAFT_73164 I
SELMODRAFT_73169 Selaginella moellendorffii SELMODRAFT_73169 I
SELMODRAFT_86738 Selaginella moellendorffii SELMODRAFT_86738 I
Si017941m.g Setaria italica Si017941m.g I
Si030692m.g Setaria italica Si030692m.g I
Solyc03g093610.1 Solanum lycopersicum Solyc03g093610.1 I
Solyc05g052050.1 Solanum lycopersicum Solyc05g052050.1 I
Solyc08g078170.1 Solanum lycopersicum Solyc08g078170.1 I
Solyc12g042210.1 Solanum lycopersicum Solyc12g042210.1 I
TCM_008334 Theobroma cacao TCM_008334 I
TCM_014762 Theobroma cacao TCM_014762 I
TCM_014845 Theobroma cacao TCM_014845 I
TCM_015898 Theobroma cacao TCM_015898 I
TCM_015902 Theobroma cacao TCM_015902 I
TCM_017352 Theobroma cacao TCM_017352 I
TCM_026233 Theobroma cacao TCM_026233 I
Traes_2AL_158F8EE88 Triticum aestivum Traes_2AL_158F8EE88 I
Traes_2BL_CF47A74CC Triticum aestivum Traes_2BL_CF47A74CC I
VIT_02s0234g00130 Vitis vinifera VIT_02s0234g00130 I
VIT_14s0068g01040 Vitis vinifera VIT_14s0068g01040 I
VIT_16s0013g00890 Vitis vinifera VIT_16s0013g00890 I
Ca_01387 Cicer arietinum Ca_01387 I
Ca_12775 Cicer arietinum Ca_12775 I
Ca_19135 Cicer arietinum Ca_19135 I
Ca_21773 Cicer arietinum Ca_21773 I
Cla003706 Citrullus lanatus Cla003706 I
Cla005705 Citrullus lanatus Cla005705 I
Cla007205 Citrullus lanatus Cla007205 I
Cla019618 Citrullus lanatus Cla019618 I
Pm019546 Prunus mume Pm019546 I
Pm023376 Prunus mume Pm023376 I
Pm024604 Prunus mume Pm024604 I
28192.m000255 Ricinus communis 28192.m000255 I
29900.m001561 Ricinus communis 29900.m001561 I
30131.m006971 Ricinus communis 30131.m006971 I
30147.m014331 Ricinus communis 30147.m014331 I
30147.m014403 Ricinus communis 30147.m014403 I
cassava10717.m1 Manihot esculenta cassava10717.m1 I
cassava19959.m1 Manihot esculenta cassava19959.m1 I
cassava45576.m1 Manihot esculenta cassava45576.m1 I
cassava47034.m1 Manihot esculenta cassava47034.m1 I
cassava4871.m1 Manihot esculenta cassava4871.m1 I
Cucsa.129630 Cucumis sativus Cucsa.129630 I
Cucsa.156890 Cucumis sativus Cucsa.156890 I
Cucsa.321150 Cucumis sativus Cucsa.321150 I
Cucsa.321160 Cucumis sativus Cucsa.321160 I
Cucsa.349200 Cucumis sativus Cucsa.349200 I
e_gw1.357.22.1 Physcomitrella patens e_gw1.357.22.1 I
gw1.13.222.1 Physcomitrella patens gw1.13.222.1 I
gw1.2.361.1 Physcomitrella patens gw1.2.361.1 I
gw1.25.154.1 Physcomitrella patens gw1.25.154.1 I
gw1.38.156.1 Physcomitrella patens gw1.38.156.1 I
mgf020878m Mimulus guttatus mgf020878m I
mgf023779m Mimulus guttatus mgf023779m I
mgf026054m Mimulus guttatus mgf026054m I
Aquca_043_00039 Aquilegia coerulea Aquca_043_00039 I
Aquca_067_00004 Aquilegia coerulea Aquca_067_00004 I
Bostr.13129s0235 Boechera stricta Bostr.13129s0235 I
Bostr.14419s0016 Boechera stricta Bostr.14419s0016 I
Bostr.26833s0047 Boechera stricta Bostr.26833s0047 I
Bostr.2902s0068 Boechera stricta Bostr.2902s0068 I
Bostr.30275s0207 Boechera stricta Bostr.30275s0207 I
Cagra.2662s0009 Capsella grandiflora Cagra.2662s0009 I
Cagra.3356s0041 Capsella grandiflora Cagra.3356s0041 I
Cagra.3675s0007 Capsella grandiflora Cagra.3675s0007 I
Cagra.4553s0019 Capsella grandiflora Cagra.4553s0019 I
Carubv10001831m.g Capsella rubella Carubv10001831m.g I
Carubv10002723m.g Capsella rubella Carubv10002723m.g I
Carubv10005497m.g Capsella rubella Carubv10005497m.g I
Carubv10027012m.g Capsella rubella Carubv10027012m.g I
Carubv10027108m.g Capsella rubella Carubv10027108m.g I
Ciclev10003903m.g Citrus clementina Ciclev10003903m.g I
Ciclev10005891m.g Citrus clementina Ciclev10005891m.g I
Ciclev10018158m.g Citrus clementina Ciclev10018158m.g I
Ciclev10021652m.g Citrus clementina Ciclev10021652m.g I
Ciclev10032575m.g Citrus clementina Ciclev10032575m.g I
Eucgr.A02924 Eucalyptus grandis Eucgr.A02924 I
Eucgr.G01970 Eucalyptus grandis Eucgr.G01970 I
Eucgr.I00292 Eucalyptus grandis Eucgr.I00292 I
evm.TU.supercontig_13.175 Carica papaya evm.TU.supercontig_13.175 I
evm.TU.supercontig_13.250 Carica papaya evm.TU.supercontig_13.250 I
gene06407-v1.0-hybrid Fragaria vesca gene06407-v1.0-hybrid I
gene10841-v1.0-hybrid Fragaria vesca gene10841-v1.0-hybrid I
Gorai.001G051300 Gossypium raimondii Gorai.001G051300 I
Gorai.003G176200 Gossypium raimondii Gorai.003G176200 I
Gorai.004G195000 Gossypium raimondii Gorai.004G195000 I
Gorai.004G195100 Gossypium raimondii Gorai.004G195100 I
Gorai.004G195200 Gossypium raimondii Gorai.004G195200 I
Gorai.004G195300 Gossypium raimondii Gorai.004G195300 I
Gorai.005G197100 Gossypium raimondii Gorai.005G197100 I
Gorai.006G214100 Gossypium raimondii Gorai.006G214100 I
Gorai.007G045100 Gossypium raimondii Gorai.007G045100 I
Gorai.007G046000 Gossypium raimondii Gorai.007G046000 I
Gorai.007G281000 Gossypium raimondii Gorai.007G281000 I
Gorai.008G075600 Gossypium raimondii Gorai.008G075600 I
Gorai.008G210600 Gossypium raimondii Gorai.008G210600 I
Gorai.008G232500 Gossypium raimondii Gorai.008G232500 I
Gorai.013G186700 Gossypium raimondii Gorai.013G186700 I
Lus10004368.g Linum usitatissimum Lus10004368.g I
Lus10022426.g Linum usitatissimum Lus10022426.g I
MDP0000299277 Malus domestica MDP0000299277 I
MDP0000322279 Malus domestica MDP0000322279 I
MDP0000517257 Malus domestica MDP0000517257 I
MDP0000665685 Malus domestica MDP0000665685 I
MDP0000668122 Malus domestica MDP0000668122 I
MDP0000787281 Malus domestica MDP0000787281 I
MDP0000894895 Malus domestica MDP0000894895 I
orange1.1g005229m.g Citrus sinensis orange1.1g005229m.g I
orange1.1g028566m.g Citrus sinensis orange1.1g028566m.g I
orange1.1g036963m.g Citrus sinensis orange1.1g036963m.g I
orange1.1g044938m.g Citrus sinensis orange1.1g044938m.g I
Pavir.Aa01184 Panicum virgatum Pavir.Aa01184 I
Pavir.Ab02556 Panicum virgatum Pavir.Ab02556 I
Pavir.Ga01099 Panicum virgatum Pavir.Ga01099 I
Pavir.Gb00956 Panicum virgatum Pavir.Gb00956 I
SapurV1A.0059s0630 Salix purpurea SapurV1A.0059s0630 I
SapurV1A.0107s0450 Salix purpurea SapurV1A.0107s0450 I
SapurV1A.0517s0130 Salix purpurea SapurV1A.0517s0130 I
SapurV1A.0886s0020 Salix purpurea SapurV1A.0886s0020 I
SapurV1A.1153s0050 Salix purpurea SapurV1A.1153s0050 I
SapurV1A.3099s0010 Salix purpurea SapurV1A.3099s0010 I
Thhalv10001003m.g Eutrema salsugineum Thhalv10001003m.g I
Thhalv10005416m.g Eutrema salsugineum Thhalv10005416m.g I
Thhalv10014575m.g Eutrema salsugineum Thhalv10014575m.g I
Thhalv10015583m.g Eutrema salsugineum Thhalv10015583m.g I
Thhalv10027401m.g Eutrema salsugineum Thhalv10027401m.g I
PK28774.1 Cannabis sativa PK28774.1 I
PK29475.1 Cannabis sativa PK29475.1 I
chr1.CM0094.670.nd Lotus japonicus chr1.CM0094.670.nd I
chr1.CM1880.220.nd Lotus japonicus chr1.CM1880.220.nd I
chr4.CM0175.50.nd Lotus japonicus chr4.CM0175.50.nd I
LjSGA_146586.1 Lotus japonicus LjSGA_146586.1 I
PDK_20s1354201g001 Phoenix dactylifera PDK_20s1354201g001 I
gw1.38.157.1 Physcomitrella patens gw1.38.157.1 N