CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10012266m.g
(
Capsella rubella
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Carubv10012266m.g
T142716_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10012266m
C2H2 ZF
222
243
YSCRICGKLLAVKGDWRTHEKN
Carubv10012266m
C2H2 ZF
242
268
KNCGKRWVCICGSDFKHKRSLKDHVKA
Links
Other
C2H2 ZF
family TFs
Other
Capsella rubella
TFs
136 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A5JTT1_WHEAT
Triticum aestivum
A5JTT1_WHEAT
D
ERF1A
Arabidopsis thaliana
AT4G17500
D
ERF115
Arabidopsis thaliana
AT5G07310
D
ERF113
Arabidopsis thaliana
AT5G13330
D
ERF2
Arabidopsis thaliana
AT5G47220
D
ERF2_TOBAC
Nicotiana tabacum
ERF2_TOBAC
D
ERF114
Arabidopsis thaliana
AT5G61890
I
BGIOSGA005915
Oryza indica
BGIOSGA005915
I
BGIOSGA014605
Oryza indica
BGIOSGA014605
I
Bo1g017590
Brassica oleracea
Bo1g017590
I
Bo2g008570
Brassica oleracea
Bo2g008570
I
Bo2g011200
Brassica oleracea
Bo2g011200
I
Bo2g132270
Brassica oleracea
Bo2g132270
I
Bo2g161710
Brassica oleracea
Bo2g161710
I
Bo3g004290
Brassica oleracea
Bo3g004290
I
Bo3g109240
Brassica oleracea
Bo3g109240
I
Bo8g049470
Brassica oleracea
Bo8g049470
I
Bo9g175390
Brassica oleracea
Bo9g175390
I
Bra005932
Brassica rapa
Bra005932
I
Bra009272
Brassica rapa
Bra009272
I
Bra021047
Brassica rapa
Bra021047
I
Bra021048
Brassica rapa
Bra021048
I
Bra022115
Brassica rapa
Bra022115
I
Bra023404
Brassica rapa
Bra023404
I
Bra028703
Brassica rapa
Bra028703
I
Bra029302
Brassica rapa
Bra029302
I
BRADI3G50490
Brachypodium distachyon
BRADI3G50490
I
Rap2.6L
Arabidopsis lyrata
fgenesh2_kg.6__1285__AT5G13330.1
I
fgenesh2_kg.6__690__AT5G07310.1
Arabidopsis lyrata
fgenesh2_kg.6__690__AT5G07310.1
I
ATERF-1
Arabidopsis lyrata
fgenesh2_kg.7__2559__AT4G17500.1
I
ATERF2
Arabidopsis lyrata
fgenesh2_kg.8__70__AT5G47220.1
I
GLYMA01G41520
Glycine max
GLYMA01G41520
I
GLYMA02G07310
Glycine max
GLYMA02G07310
I
GLYMA05G05180
Glycine max
GLYMA05G05180
I
GLYMA06G17180
Glycine max
GLYMA06G17180
I
GLYMA11G03910
Glycine max
GLYMA11G03910
I
GLYMA16G05190
Glycine max
GLYMA16G05190
I
GLYMA16G26320
Glycine max
GLYMA16G26320
I
GLYMA17G15480
Glycine max
GLYMA17G15480
I
GLYMA19G27790
Glycine max
GLYMA19G27790
I
GRMZM2G016434
Zea mays
GRMZM2G016434
I
GRMZM2G055180
Zea mays
GRMZM2G055180
I
GRMZM2G080516
Zea mays
GRMZM2G080516
I
GRMZM2G466044
Zea mays
GRMZM2G466044
I
GSMUA_Achr11G20930_001
Musa acuminata
GSMUA_Achr11G20930_001
I
GSMUA_Achr2G17810_001
Musa acuminata
GSMUA_Achr2G17810_001
I
GSMUA_Achr5G21050_001
Musa acuminata
GSMUA_Achr5G21050_001
I
GSMUA_Achr6G27040_001
Musa acuminata
GSMUA_Achr6G27040_001
I
LPERR02G21460
Leersia perrieri
LPERR02G21460
I
LPERR04G16740
Leersia perrieri
LPERR04G16740
I
LPERR11G03740
Leersia perrieri
LPERR11G03740
I
MTR_2g015050
Medicago truncatula
MTR_2g015050
I
MTR_3g098580
Medicago truncatula
MTR_3g098580
I
MTR_4g100380
Medicago truncatula
MTR_4g100380
I
MTR_6g033255
Medicago truncatula
MTR_6g033255
I
OGLUM02G26840
Oryza glumaepatula
OGLUM02G26840
I
OGLUM04G20600
Oryza glumaepatula
OGLUM04G20600
I
OMERI02G25760
Oryza meridionalis
OMERI02G25760
I
OMERI04G17100
Oryza meridionalis
OMERI04G17100
I
ONIVA02G28810
Oryza nivara
ONIVA02G28810
I
ONIVA04G18900
Oryza nivara
ONIVA04G18900
I
OPUNC02G24070
Oryza punctata
OPUNC02G24070
I
OPUNC04G18300
Oryza punctata
OPUNC04G18300
I
ORGLA02G0226500
Oryza glaberrima
ORGLA02G0226500
I
ORGLA04G0177100
Oryza glaberrima
ORGLA04G0177100
I
ORUFI02G27830
Oryza rufipogon
ORUFI02G27830
I
ORUFI04G22230
Oryza rufipogon
ORUFI04G22230
I
OS02G0654700
Oryza sativa
OS02G0654700
I
OS04G0546800
Oryza sativa
OS04G0546800
I
PGSC0003DMG400010750
Solanum tuberosum
PGSC0003DMG400010750
I
PGSC0003DMG400016006
Solanum tuberosum
PGSC0003DMG400016006
I
PGSC0003DMG400026260
Solanum tuberosum
PGSC0003DMG400026260
I
POPTR_0001s15390
Populus trichocarpa
POPTR_0001s15390
I
POPTR_0003s07910
Populus trichocarpa
POPTR_0003s07910
I
POPTR_0003s15030
Populus trichocarpa
POPTR_0003s15030
I
POPTR_0011s06010
Populus trichocarpa
POPTR_0011s06010
I
POPTR_0012s11030
Populus trichocarpa
POPTR_0012s11030
I
PRUPE_ppa008772mg
Prunus persica
PRUPE_ppa008772mg
I
PRUPE_ppa009707mg
Prunus persica
PRUPE_ppa009707mg
I
PRUPE_ppa010186mg
Prunus persica
PRUPE_ppa010186mg
I
Sb04g033105
Sorghum bicolor
Sb04g033105
I
Sb06g024355
Sorghum bicolor
Sb06g024355
I
scaffold_802838.1
Arabidopsis lyrata
scaffold_802838.1
I
SELMODRAFT_68470
Selaginella moellendorffii
SELMODRAFT_68470
I
SELMODRAFT_73164
Selaginella moellendorffii
SELMODRAFT_73164
I
SELMODRAFT_73169
Selaginella moellendorffii
SELMODRAFT_73169
I
SELMODRAFT_86738
Selaginella moellendorffii
SELMODRAFT_86738
I
Si017941m.g
Setaria italica
Si017941m.g
I
Si030692m.g
Setaria italica
Si030692m.g
I
Solyc03g093610.1
Solanum lycopersicum
Solyc03g093610.1
I
Solyc05g052050.1
Solanum lycopersicum
Solyc05g052050.1
I
Solyc08g078170.1
Solanum lycopersicum
Solyc08g078170.1
I
Solyc12g042210.1
Solanum lycopersicum
Solyc12g042210.1
I
TCM_008334
Theobroma cacao
TCM_008334
I
TCM_014762
Theobroma cacao
TCM_014762
I
TCM_014845
Theobroma cacao
TCM_014845
I
TCM_015898
Theobroma cacao
TCM_015898
I
TCM_015902
Theobroma cacao
TCM_015902
I
TCM_017352
Theobroma cacao
TCM_017352
I
TCM_026233
Theobroma cacao
TCM_026233
I
Traes_2AL_158F8EE88
Triticum aestivum
Traes_2AL_158F8EE88
I
Traes_2BL_CF47A74CC
Triticum aestivum
Traes_2BL_CF47A74CC
I
VIT_02s0234g00130
Vitis vinifera
VIT_02s0234g00130
I
VIT_14s0068g01040
Vitis vinifera
VIT_14s0068g01040
I
VIT_16s0013g00890
Vitis vinifera
VIT_16s0013g00890
I
Ca_01387
Cicer arietinum
Ca_01387
I
Ca_12775
Cicer arietinum
Ca_12775
I
Ca_19135
Cicer arietinum
Ca_19135
I
Ca_21773
Cicer arietinum
Ca_21773
I
Cla003706
Citrullus lanatus
Cla003706
I
Cla005705
Citrullus lanatus
Cla005705
I
Cla007205
Citrullus lanatus
Cla007205
I
Cla019618
Citrullus lanatus
Cla019618
I
Pm019546
Prunus mume
Pm019546
I
Pm023376
Prunus mume
Pm023376
I
Pm024604
Prunus mume
Pm024604
I
28192.m000255
Ricinus communis
28192.m000255
I
29900.m001561
Ricinus communis
29900.m001561
I
30131.m006971
Ricinus communis
30131.m006971
I
30147.m014331
Ricinus communis
30147.m014331
I
30147.m014403
Ricinus communis
30147.m014403
I
cassava10717.m1
Manihot esculenta
cassava10717.m1
I
cassava19959.m1
Manihot esculenta
cassava19959.m1
I
cassava45576.m1
Manihot esculenta
cassava45576.m1
I
cassava47034.m1
Manihot esculenta
cassava47034.m1
I
cassava4871.m1
Manihot esculenta
cassava4871.m1
I
Cucsa.129630
Cucumis sativus
Cucsa.129630
I
Cucsa.156890
Cucumis sativus
Cucsa.156890
I
Cucsa.321150
Cucumis sativus
Cucsa.321150
I
Cucsa.321160
Cucumis sativus
Cucsa.321160
I
Cucsa.349200
Cucumis sativus
Cucsa.349200
I
e_gw1.357.22.1
Physcomitrella patens
e_gw1.357.22.1
I
gw1.13.222.1
Physcomitrella patens
gw1.13.222.1
I
gw1.2.361.1
Physcomitrella patens
gw1.2.361.1
I
gw1.25.154.1
Physcomitrella patens
gw1.25.154.1
I
gw1.38.156.1
Physcomitrella patens
gw1.38.156.1
I
mgf020878m
Mimulus guttatus
mgf020878m
I
mgf023779m
Mimulus guttatus
mgf023779m
I
mgf026054m
Mimulus guttatus
mgf026054m
I
Aquca_043_00039
Aquilegia coerulea
Aquca_043_00039
I
Aquca_067_00004
Aquilegia coerulea
Aquca_067_00004
I
Bostr.13129s0235
Boechera stricta
Bostr.13129s0235
I
Bostr.14419s0016
Boechera stricta
Bostr.14419s0016
I
Bostr.26833s0047
Boechera stricta
Bostr.26833s0047
I
Bostr.2902s0068
Boechera stricta
Bostr.2902s0068
I
Bostr.30275s0207
Boechera stricta
Bostr.30275s0207
I
Cagra.2662s0009
Capsella grandiflora
Cagra.2662s0009
I
Cagra.3356s0041
Capsella grandiflora
Cagra.3356s0041
I
Cagra.3675s0007
Capsella grandiflora
Cagra.3675s0007
I
Cagra.4553s0019
Capsella grandiflora
Cagra.4553s0019
I
Carubv10001831m.g
Capsella rubella
Carubv10001831m.g
I
Carubv10002723m.g
Capsella rubella
Carubv10002723m.g
I
Carubv10005497m.g
Capsella rubella
Carubv10005497m.g
I
Carubv10027012m.g
Capsella rubella
Carubv10027012m.g
I
Carubv10027108m.g
Capsella rubella
Carubv10027108m.g
I
Ciclev10003903m.g
Citrus clementina
Ciclev10003903m.g
I
Ciclev10005891m.g
Citrus clementina
Ciclev10005891m.g
I
Ciclev10018158m.g
Citrus clementina
Ciclev10018158m.g
I
Ciclev10021652m.g
Citrus clementina
Ciclev10021652m.g
I
Ciclev10032575m.g
Citrus clementina
Ciclev10032575m.g
I
Eucgr.A02924
Eucalyptus grandis
Eucgr.A02924
I
Eucgr.G01970
Eucalyptus grandis
Eucgr.G01970
I
Eucgr.I00292
Eucalyptus grandis
Eucgr.I00292
I
evm.TU.supercontig_13.175
Carica papaya
evm.TU.supercontig_13.175
I
evm.TU.supercontig_13.250
Carica papaya
evm.TU.supercontig_13.250
I
gene06407-v1.0-hybrid
Fragaria vesca
gene06407-v1.0-hybrid
I
gene10841-v1.0-hybrid
Fragaria vesca
gene10841-v1.0-hybrid
I
Gorai.001G051300
Gossypium raimondii
Gorai.001G051300
I
Gorai.003G176200
Gossypium raimondii
Gorai.003G176200
I
Gorai.004G195000
Gossypium raimondii
Gorai.004G195000
I
Gorai.004G195100
Gossypium raimondii
Gorai.004G195100
I
Gorai.004G195200
Gossypium raimondii
Gorai.004G195200
I
Gorai.004G195300
Gossypium raimondii
Gorai.004G195300
I
Gorai.005G197100
Gossypium raimondii
Gorai.005G197100
I
Gorai.006G214100
Gossypium raimondii
Gorai.006G214100
I
Gorai.007G045100
Gossypium raimondii
Gorai.007G045100
I
Gorai.007G046000
Gossypium raimondii
Gorai.007G046000
I
Gorai.007G281000
Gossypium raimondii
Gorai.007G281000
I
Gorai.008G075600
Gossypium raimondii
Gorai.008G075600
I
Gorai.008G210600
Gossypium raimondii
Gorai.008G210600
I
Gorai.008G232500
Gossypium raimondii
Gorai.008G232500
I
Gorai.013G186700
Gossypium raimondii
Gorai.013G186700
I
Lus10004368.g
Linum usitatissimum
Lus10004368.g
I
Lus10022426.g
Linum usitatissimum
Lus10022426.g
I
MDP0000299277
Malus domestica
MDP0000299277
I
MDP0000322279
Malus domestica
MDP0000322279
I
MDP0000517257
Malus domestica
MDP0000517257
I
MDP0000665685
Malus domestica
MDP0000665685
I
MDP0000668122
Malus domestica
MDP0000668122
I
MDP0000787281
Malus domestica
MDP0000787281
I
MDP0000894895
Malus domestica
MDP0000894895
I
orange1.1g005229m.g
Citrus sinensis
orange1.1g005229m.g
I
orange1.1g028566m.g
Citrus sinensis
orange1.1g028566m.g
I
orange1.1g036963m.g
Citrus sinensis
orange1.1g036963m.g
I
orange1.1g044938m.g
Citrus sinensis
orange1.1g044938m.g
I
Pavir.Aa01184
Panicum virgatum
Pavir.Aa01184
I
Pavir.Ab02556
Panicum virgatum
Pavir.Ab02556
I
Pavir.Ga01099
Panicum virgatum
Pavir.Ga01099
I
Pavir.Gb00956
Panicum virgatum
Pavir.Gb00956
I
SapurV1A.0059s0630
Salix purpurea
SapurV1A.0059s0630
I
SapurV1A.0107s0450
Salix purpurea
SapurV1A.0107s0450
I
SapurV1A.0517s0130
Salix purpurea
SapurV1A.0517s0130
I
SapurV1A.0886s0020
Salix purpurea
SapurV1A.0886s0020
I
SapurV1A.1153s0050
Salix purpurea
SapurV1A.1153s0050
I
SapurV1A.3099s0010
Salix purpurea
SapurV1A.3099s0010
I
Thhalv10001003m.g
Eutrema salsugineum
Thhalv10001003m.g
I
Thhalv10005416m.g
Eutrema salsugineum
Thhalv10005416m.g
I
Thhalv10014575m.g
Eutrema salsugineum
Thhalv10014575m.g
I
Thhalv10015583m.g
Eutrema salsugineum
Thhalv10015583m.g
I
Thhalv10027401m.g
Eutrema salsugineum
Thhalv10027401m.g
I
PK28774.1
Cannabis sativa
PK28774.1
I
PK29475.1
Cannabis sativa
PK29475.1
I
chr1.CM0094.670.nd
Lotus japonicus
chr1.CM0094.670.nd
I
chr1.CM1880.220.nd
Lotus japonicus
chr1.CM1880.220.nd
I
chr4.CM0175.50.nd
Lotus japonicus
chr4.CM0175.50.nd
I
LjSGA_146586.1
Lotus japonicus
LjSGA_146586.1
I
PDK_20s1354201g001
Phoenix dactylifera
PDK_20s1354201g001
I
gw1.38.157.1
Physcomitrella patens
gw1.38.157.1
N