CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10015674m.g
(
Capsella rubella
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Carubv10015674m.g
T142718_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT2G15740
M06810_2.00
Arabidopsis thaliana
WCGHHDYCGWY
RWCGRHDDCGW
Dap-seq
OMalley et al.(2016)
AT2G15740_col_a
0.768
0.826
AT5G22990
M06821_2.00
Arabidopsis thaliana
WCGWHDTCGWYNHNN
NNDNRWCGAHDWCGW
Dap-seq
OMalley et al.(2016)
AT5G22990_col_a
0.766
0.870
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10015674m
C2H2 ZF
35
57
YTCPKCNGMFDTCQKFAAHISSH
Links
Other
C2H2 ZF
family TFs
Other
Capsella rubella
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AT2G15740
Arabidopsis thaliana
AT2G15740
D
0.768
Bra039606
Brassica rapa
Bra039606
I
0.768
scaffold_303767.1
Arabidopsis lyrata
scaffold_303767.1
I
0.768
Cagra.6034s0007
Capsella grandiflora
Cagra.6034s0007
I
0.768
Carubv10015875m.g
Capsella rubella
Carubv10015875m.g
I
0.768
Carubv10016477m.g
Capsella rubella
Carubv10016477m.g
I
0.768
Thhalv10023174m.g
Eutrema salsugineum
Thhalv10023174m.g
I
0.768
AT2G18490
Arabidopsis thaliana
AT2G18490
I
0.766
AT5G22990
Arabidopsis thaliana
AT5G22990
D
0.766
Bo7g010020
Brassica oleracea
Bo7g010020
I
0.766
Bo9g147060
Brassica oleracea
Bo9g147060
I
0.766
scaffold_602360.1
Arabidopsis lyrata
scaffold_602360.1
I
0.766
Bostr.10199s0147
Boechera stricta
Bostr.10199s0147
I
0.766
Cagra.3954s0034
Capsella grandiflora
Cagra.3954s0034
I
0.766
Carubv10002800m.g
Capsella rubella
Carubv10002800m.g
I
0.766
Thhalv10015522m.g
Eutrema salsugineum
Thhalv10015522m.g
I
0.766