CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.006G190500
(
Gossypium raimondii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gorai.006G190500
T143030_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SGR5
M06805_2.00
Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW
Dap-seq
OMalley et al.(2016)
SGR5_col_a
0.806
0.909
SGR5
M06806_2.00
Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW
Dap-seq
OMalley et al.(2016)
SGR5_colamp_a
0.806
0.909
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.006G190500.1
C2H2 ZF
133
154
WVCQKCSKGYAVQSDYKAHLKT
Gorai.006G190500.1
C2H2 ZF
154
182
TCGTRGHSCDCGRVFSRVESFIEHQDACH
Links
Other
C2H2 ZF
family TFs
Other
Gossypium raimondii
TFs
114 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.007G002600
Gossypium raimondii
Gorai.007G002600
I
0.827
TCM_039880
Theobroma cacao
TCM_039880
I
0.822
Gorai.005G134600
Gossypium raimondii
Gorai.005G134600
I
0.822
Bra024841
Brassica rapa
Bra024841
I
0.812
GLYMA05G26780
Glycine max
GLYMA05G26780
I
0.812
GLYMA08G09760
Glycine max
GLYMA08G09760
I
0.812
GSMUA_Achr7G18610_001
Musa acuminata
GSMUA_Achr7G18610_001
I
0.812
PGSC0003DMG400026959
Solanum tuberosum
PGSC0003DMG400026959
I
0.812
PGSC0003DMG400031049
Solanum tuberosum
PGSC0003DMG400031049
I
0.812
POPTR_0008s13980
Populus trichocarpa
POPTR_0008s13980
I
0.812
POPTR_0010s11160
Populus trichocarpa
POPTR_0010s11160
I
0.812
POPTR_0012s03730
Populus trichocarpa
POPTR_0012s03730
I
0.812
POPTR_0015s05180
Populus trichocarpa
POPTR_0015s05180
I
0.812
PRUPE_ppa004447mg
Prunus persica
PRUPE_ppa004447mg
I
0.812
PRUPE_ppa005331mg
Prunus persica
PRUPE_ppa005331mg
I
0.812
Solyc06g072360.2
Solanum lycopersicum
Solyc06g072360.2
I
0.812
TCM_011210
Theobroma cacao
TCM_011210
I
0.812
VIT_01s0011g06400
Vitis vinifera
VIT_01s0011g06400
I
0.812
VIT_17s0000g01870
Vitis vinifera
VIT_17s0000g01870
I
0.812
Ca_05083
Cicer arietinum
Ca_05083
I
0.812
Cla018945
Citrullus lanatus
Cla018945
I
0.812
Pm005926
Prunus mume
Pm005926
I
0.812
Pm025274
Prunus mume
Pm025274
I
0.812
28952.m000016
Ricinus communis
28952.m000016
I
0.812
cassava18079.valid.m1
Manihot esculenta
cassava18079.valid.m1
I
0.812
cassava1947.valid.m1
Manihot esculenta
cassava1947.valid.m1
I
0.812
cassava36596.valid.m1
Manihot esculenta
cassava36596.valid.m1
I
0.812
Cucsa.112090
Cucumis sativus
Cucsa.112090
I
0.812
Cucsa.122150
Cucumis sativus
Cucsa.122150
I
0.812
Aquca_002_01252
Aquilegia coerulea
Aquca_002_01252
I
0.812
Ciclev10015315m.g
Citrus clementina
Ciclev10015315m.g
I
0.812
Ciclev10020125m.g
Citrus clementina
Ciclev10020125m.g
I
0.812
evm.TU.supercontig_2.118
Carica papaya
evm.TU.supercontig_2.118
I
0.812
evm.TU.supercontig_7.131
Carica papaya
evm.TU.supercontig_7.131
I
0.812
gene00618-v1.0-hybrid
Fragaria vesca
gene00618-v1.0-hybrid
I
0.812
gene09325-v1.0-hybrid
Fragaria vesca
gene09325-v1.0-hybrid
I
0.812
Gorai.002G171100
Gossypium raimondii
Gorai.002G171100
I
0.812
Gorai.008G293000
Gossypium raimondii
Gorai.008G293000
I
0.812
Gorai.009G329200
Gossypium raimondii
Gorai.009G329200
I
0.812
Lus10026369.g
Linum usitatissimum
Lus10026369.g
I
0.812
Lus10031314.g
Linum usitatissimum
Lus10031314.g
I
0.812
Lus10031882.g
Linum usitatissimum
Lus10031882.g
I
0.812
orange1.1g014184m.g
Citrus sinensis
orange1.1g014184m.g
I
0.812
orange1.1g037502m.g
Citrus sinensis
orange1.1g037502m.g
I
0.812
SapurV1A.0055s0020
Salix purpurea
SapurV1A.0055s0020
I
0.812
SapurV1A.0074s0350
Salix purpurea
SapurV1A.0074s0350
I
0.812
SapurV1A.1169s0070
Salix purpurea
SapurV1A.1169s0070
I
0.812
PK25720.1
Cannabis sativa
PK25720.1
I
0.812
chr4.CM0387.280.nc
Lotus japonicus
chr4.CM0387.280.nc
I
0.812
AtIDD16
Arabidopsis thaliana
AT1G25250
I
0.806
SGR5
Arabidopsis thaliana
AT2G01940
D
0.806
BGIOSGA011151
Oryza indica
BGIOSGA011151
I
0.806
Bo2g134790
Brassica oleracea
Bo2g134790
I
0.806
Bo3g139880
Brassica oleracea
Bo3g139880
I
0.806
Bo5g043540
Brassica oleracea
Bo5g043540
I
0.806
Bo9g070370
Brassica oleracea
Bo9g070370
I
0.806
Bra010981
Brassica rapa
Bra010981
I
0.806
Bra017432
Brassica rapa
Bra017432
I
0.806
Bra024771
Brassica rapa
Bra024771
I
0.806
Bra026624
Brassica rapa
Bra026624
I
0.806
BRADI1G68730
Brachypodium distachyon
BRADI1G68730
I
0.806
F775_43255
Aegilops tauschii
F775_43255
I
0.806
SGR5
Arabidopsis lyrata
fgenesh2_kg.5__108__AT2G01940.1
I
0.806
GLYMA05G33590
Glycine max
GLYMA05G33590
I
0.806
GLYMA07G12170
Glycine max
GLYMA07G12170
I
0.806
GLYMA08G06130
Glycine max
GLYMA08G06130
I
0.806
GLYMA09G30030
Glycine max
GLYMA09G30030
I
0.806
GRMZM2G074032
Zea mays
GRMZM2G074032
I
0.806
GRMZM2G465595
Zea mays
GRMZM2G465595
I
0.806
GSMUA_Achr6G02490_001
Musa acuminata
GSMUA_Achr6G02490_001
I
0.806
LPERR03G08760
Leersia perrieri
LPERR03G08760
I
0.806
OB09G18760
Oryza brachyantha
OB09G18760
I
0.806
OGLUM03G09920
Oryza glumaepatula
OGLUM03G09920
I
0.806
OMERI03G09110
Oryza meridionalis
OMERI03G09110
I
0.806
ONIVA03G10380
Oryza nivara
ONIVA03G10380
I
0.806
OPUNC03G09440
Oryza punctata
OPUNC03G09440
I
0.806
ORGLA03G0094200
Oryza glaberrima
ORGLA03G0094200
I
0.806
ORUFI03G10000
Oryza rufipogon
ORUFI03G10000
I
0.806
OS03G0237250
Oryza sativa
OS03G0237250
I
0.806
Traes_4AS_2718699A7
Triticum aestivum
Traes_4AS_2718699A7
I
0.806
Ca_22171
Cicer arietinum
Ca_22171
I
0.806
mgf008235m
Mimulus guttatus
mgf008235m
I
0.806
Bostr.0556s0022
Boechera stricta
Bostr.0556s0022
I
0.806
Bostr.15697s0010
Boechera stricta
Bostr.15697s0010
I
0.806
Cagra.2231s0014
Capsella grandiflora
Cagra.2231s0014
I
0.806
Cagra.3834s0006
Capsella grandiflora
Cagra.3834s0006
I
0.806
Carubv10009424m.g
Capsella rubella
Carubv10009424m.g
I
0.806
Carubv10017254m.g
Capsella rubella
Carubv10017254m.g
I
0.806
Eucgr.G02066
Eucalyptus grandis
Eucgr.G02066
I
0.806
Eucgr.H00574
Eucalyptus grandis
Eucgr.H00574
I
0.806
Eucgr.K02292
Eucalyptus grandis
Eucgr.K02292
I
0.806
Pavir.J12350
Panicum virgatum
Pavir.J12350
I
0.806
Thhalv10004221m.g
Eutrema salsugineum
Thhalv10004221m.g
I
0.806
Thhalv10009376m.g
Eutrema salsugineum
Thhalv10009376m.g
I
0.806
GSMUA_Achr10G29940_001
Musa acuminata
GSMUA_Achr10G29940_001
I
0.803
Gorai.008G169500
Gossypium raimondii
Gorai.008G169500
I
0.803
AMTR_s00024p00098860
Amborella trichopoda
AMTR_s00024p00098860
I
0.788
GSMUA_Achr5G23130_001
Musa acuminata
GSMUA_Achr5G23130_001
I
0.788
Solyc01g005060.2
Solanum lycopersicum
Solyc01g005060.2
I
0.788
SapurV1A.0015s0850
Salix purpurea
SapurV1A.0015s0850
I
0.788
Cla005913
Citrullus lanatus
Cla005913
I
0.783
IDD14
Arabidopsis thaliana
AT1G68130
I
0.782
Bo6g097320
Brassica oleracea
Bo6g097320
I
0.782
Bo6g106560
Brassica oleracea
Bo6g106560
I
0.782
Bra004050
Brassica rapa
Bra004050
I
0.782
Bra004283
Brassica rapa
Bra004283
I
0.782
AtIDD14
Arabidopsis lyrata
fgenesh2_kg.2__1036__AT1G68130.1
I
0.782
Bostr.26959s0085
Boechera stricta
Bostr.26959s0085
I
0.782
Cagra.1111s0006
Capsella grandiflora
Cagra.1111s0006
I
0.782
Carubv10020337m.g
Capsella rubella
Carubv10020337m.g
I
0.782
Thhalv10018614m.g
Eutrema salsugineum
Thhalv10018614m.g
I
0.782
PK17145.1
Cannabis sativa
PK17145.1
I
0.782
Gorai.005G154300
Gossypium raimondii
Gorai.005G154300
I
0.779
estExt_Genewise1.C_2180024
Physcomitrella patens
estExt_Genewise1.C_2180024
N
0.759