Lus10009435.g (Linum usitatissimum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Lus10009435.g T143106_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.779 0.953
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.779 0.953
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10009435 C2H2 ZF 309 331
Lus10009435 C2H2 ZF 332 361

Links

Other C2H2 ZF family TFs
Other Linum usitatissimum TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_04088 Aegilops tauschii F775_04088 I 0.803
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I 0.774
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I 0.774
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.779
STOP1 Arabidopsis thaliana AT1G34370 D 0.779
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.779
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I 0.803
Bo8g027000 Brassica oleracea Bo8g027000 I 0.779
Bra040971 Brassica rapa Bra040971 I 0.803
PK23301.1 Cannabis sativa PK23301.1 I 0.779
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.779
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.779
Ca_04300 Cicer arietinum Ca_04300 I 0.779
Cla016623 Citrullus lanatus Cla016623 I 0.773
Ciclev10000850m.g Citrus clementina Ciclev10000850m.g I 0.779
orange1.1g009831m.g Citrus sinensis orange1.1g009831m.g I 0.779
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.773
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.769
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.779
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.779
Gorai.006G131700 Gossypium raimondii Gorai.006G131700 I 0.793
MLOC_10987 Hordeum vulgare MLOC_10987 I 0.803
LPERR01G33350 Leersia perrieri LPERR01G33350 I 0.803
MDP0000141403 Malus domestica MDP0000141403 I 0.779
MDP0000199559 Malus domestica MDP0000199559 I 0.779
MDP0000453148 Malus domestica MDP0000453148 I 0.793
MDP0000551046 Malus domestica MDP0000551046 I 0.779
MDP0000807856 Malus domestica MDP0000807856 I 0.779
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.779
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I 0.760
mgf000060m Mimulus guttatus mgf000060m I 0.779
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.779
GSMUA_Achr10G15970_001 Musa acuminata GSMUA_Achr10G15970_001 I 0.768
OBART01G38810 Oryza barthii OBART01G38810 I 0.803
OB01G47470 Oryza brachyantha OB01G47470 I 0.803
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I 0.803
BGIOSGA004888 Oryza indica BGIOSGA004888 I 0.803
OLONG_020555 Oryza longistaminata OLONG_020555 I 0.803
ONIVA01G43630 Oryza nivara ONIVA01G43630 I 0.803
OPUNC01G37530 Oryza punctata OPUNC01G37530 I 0.803
ORUFI01G42150 Oryza rufipogon ORUFI01G42150 I 0.803
OS01G0871200 Oryza sativa OS01G0871200 I 0.803
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.779
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.779
Pavir.J14096 Panicum virgatum Pavir.J14096 I 0.803
Pm022201 Prunus mume Pm022201 I 0.779
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.779
Si001053m.g Setaria italica Si001053m.g I 0.803
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.769
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.769
Sb03g041170 Sorghum bicolor Sb03g041170 I 0.803
TCM_036719 Theobroma cacao TCM_036719 I 0.769
Traes_3AL_00FAACD5D Triticum aestivum Traes_3AL_00FAACD5D I 0.803
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I 0.803
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I 0.803
TRIUR3_13796 Triticum urartu TRIUR3_13796 I 0.803
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.779
GRMZM2G075956 Zea mays GRMZM2G075956 I 0.803
GRMZM2G129428 Zea mays GRMZM2G129428 I 0.803