CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000121370
(
Malus domestica
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
MDP0000121370
T143163_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZFP5
M01851_2.00
Arabidopsis thaliana
DSWTNNNN
NNNNAWSH
PBM
Weirauch et al.(2014)
pTH7539
0.812
0.652
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000121370
C2H2 ZF
24
46
FECHYCDRKFKSSQAWGGHQNAH
Links
Other
C2H2 ZF
family TFs
Other
Malus domestica
TFs
103 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MDP0000165710
Malus domestica
MDP0000165710
I
0.827
GRMZM2G703281
Zea mays
GRMZM2G703281
I
0.824
PGSC0003DMG400011450
Solanum tuberosum
PGSC0003DMG400011450
I
0.824
Solyc10g078990.1
Solanum lycopersicum
Solyc10g078990.1
I
0.824
Pm008291
Prunus mume
Pm008291
I
0.824
Carubv10018785m.g
Capsella rubella
Carubv10018785m.g
I
0.824
evm.TU.supercontig_1307.1
Carica papaya
evm.TU.supercontig_1307.1
I
0.824
Lus10017229.g
Linum usitatissimum
Lus10017229.g
I
0.824
Solyc10g078970.1
Solanum lycopersicum
Solyc10g078970.1
I
0.814
cassava45710.m1
Manihot esculenta
cassava45710.m1
I
0.814
chr5.LjT04G07.90.nd
Lotus japonicus
chr5.LjT04G07.90.nd
I
0.814
ZFP5
Arabidopsis thaliana
AT1G10480
D
0.812
Bo8g109510
Brassica oleracea
Bo8g109510
I
0.812
30076.m004693
Ricinus communis
30076.m004693
I
0.812
Bostr.13671s0437
Boechera stricta
Bostr.13671s0437
I
0.812
SapurV1A.0052s0050
Salix purpurea
SapurV1A.0052s0050
I
0.812
Thhalv10008773m.g
Eutrema salsugineum
Thhalv10008773m.g
I
0.812
MDP0000166683
Malus domestica
MDP0000166683
I
0.808
e_gw1.34.233.1
Physcomitrella patens
e_gw1.34.233.1
I
0.805
SELMODRAFT_450817
Selaginella moellendorffii
SELMODRAFT_450817
I
0.780
SELMODRAFT_450828
Selaginella moellendorffii
SELMODRAFT_450828
I
0.780
SELMODRAFT_450830
Selaginella moellendorffii
SELMODRAFT_450830
I
0.780
GIS2
Arabidopsis thaliana
AT5G06650
I
0.776
Bo2g007320
Brassica oleracea
Bo2g007320
I
0.776
Bra028724
Brassica rapa
Bra028724
I
0.776
GIS2
Arabidopsis lyrata
fgenesh2_kg.6__609__AT5G06650.1
I
0.776
GLYMA03G37610
Glycine max
GLYMA03G37610
I
0.776
GLYMA19G40220
Glycine max
GLYMA19G40220
I
0.776
Bostr.13129s0308
Boechera stricta
Bostr.13129s0308
I
0.776
Carubv10003820m.g
Capsella rubella
Carubv10003820m.g
I
0.776
gene05169-v1.0-hybrid
Fragaria vesca
gene05169-v1.0-hybrid
I
0.776
Ca_08116
Cicer arietinum
Ca_08116
I
0.774
Bo9g011450
Brassica oleracea
Bo9g011450
I
0.769
BRADI4G37760
Brachypodium distachyon
BRADI4G37760
I
0.769
F775_42450
Aegilops tauschii
F775_42450
I
0.769
GRMZM2G161255
Zea mays
GRMZM2G161255
I
0.769
SELMODRAFT_405785
Selaginella moellendorffii
SELMODRAFT_405785
I
0.769
SELMODRAFT_450813
Selaginella moellendorffii
SELMODRAFT_450813
I
0.769
SELMODRAFT_450832
Selaginella moellendorffii
SELMODRAFT_450832
I
0.769
SELMODRAFT_450839
Selaginella moellendorffii
SELMODRAFT_450839
I
0.769
Si037914m.g
Setaria italica
Si037914m.g
I
0.769
Traes_5DL_DD8A0F6BE
Triticum aestivum
Traes_5DL_DD8A0F6BE
I
0.769
gene05263-v1.0-hybrid
Fragaria vesca
gene05263-v1.0-hybrid
I
0.769
Pavir.Ia03096
Panicum virgatum
Pavir.Ia03096
I
0.769
Pavir.Ib01803
Panicum virgatum
Pavir.Ib01803
I
0.769
BGIOSGA029710
Oryza indica
BGIOSGA029710
I
0.767
BRADI4G30920
Brachypodium distachyon
BRADI4G30920
I
0.767
F775_01070
Aegilops tauschii
F775_01070
I
0.767
GRMZM2G037574
Zea mays
GRMZM2G037574
I
0.767
GRMZM2G108818
Zea mays
GRMZM2G108818
I
0.767
LPERR09G07930
Leersia perrieri
LPERR09G07930
I
0.767
MLOC_4507
Hordeum vulgare
MLOC_4507
I
0.767
OB09G17800
Oryza brachyantha
OB09G17800
I
0.767
OBART09G11250
Oryza barthii
OBART09G11250
I
0.767
OGLUM09G11630
Oryza glumaepatula
OGLUM09G11630
I
0.767
OLONG_006424
Oryza longistaminata
OLONG_006424
I
0.767
OMERI09G08780
Oryza meridionalis
OMERI09G08780
I
0.767
ONIVA09G10990
Oryza nivara
ONIVA09G10990
I
0.767
OPUNC09G09720
Oryza punctata
OPUNC09G09720
I
0.767
ORGLA09G0084000
Oryza glaberrima
ORGLA09G0084000
I
0.767
ORUFI09G12050
Oryza rufipogon
ORUFI09G12050
I
0.767
OS09G0431900
Oryza sativa
OS09G0431900
I
0.767
Sb02g025390
Sorghum bicolor
Sb02g025390
I
0.767
Si031489m.g
Setaria italica
Si031489m.g
I
0.767
Traes_5AL_81EFE5211
Triticum aestivum
Traes_5AL_81EFE5211
I
0.767
Traes_5BL_3E6B0CD61
Triticum aestivum
Traes_5BL_3E6B0CD61
I
0.767
Traes_5DL_B97546DA11
Triticum aestivum
Traes_5DL_B97546DA11
I
0.767
TRIUR3_22340
Triticum urartu
TRIUR3_22340
I
0.767
Pavir.Bb02239
Panicum virgatum
Pavir.Bb02239
I
0.767
Pavir.J36164
Panicum virgatum
Pavir.J36164
I
0.767
AMTR_s00022p00165560
Amborella trichopoda
AMTR_s00022p00165560
I
0.766
Bo9g166240
Brassica oleracea
Bo9g166240
I
0.766
Bra008787
Brassica rapa
Bra008787
I
0.766
GLYMA06G14783
Glycine max
GLYMA06G14783
I
0.766
GRMZM2G115388
Zea mays
GRMZM2G115388
I
0.766
GRMZM2G403590
Zea mays
GRMZM2G403590
I
0.766
LPERR08G07840
Leersia perrieri
LPERR08G07840
I
0.766
Sb01g034110
Sorghum bicolor
Sb01g034110
I
0.766
TCM_044725
Theobroma cacao
TCM_044725
I
0.766
TRIUR3_34498
Triticum urartu
TRIUR3_34498
I
0.766
Bostr.2902s0137
Boechera stricta
Bostr.2902s0137
I
0.766
Cagra.3166s0007
Capsella grandiflora
Cagra.3166s0007
I
0.766
Carubv10002570m.g
Capsella rubella
Carubv10002570m.g
I
0.766
Ciclev10003844m.g
Citrus clementina
Ciclev10003844m.g
I
0.766
evm.TU.supercontig_116.88
Carica papaya
evm.TU.supercontig_116.88
I
0.766
orange1.1g046965m.g
Citrus sinensis
orange1.1g046965m.g
I
0.766
Pavir.Ia03263
Panicum virgatum
Pavir.Ia03263
I
0.766
Pavir.Ib01788
Panicum virgatum
Pavir.Ib01788
I
0.766
Pavir.Ib01877
Panicum virgatum
Pavir.Ib01877
I
0.766
Thhalv10015891m.g
Eutrema salsugineum
Thhalv10015891m.g
I
0.766
PK10012.1
Cannabis sativa
PK10012.1
I
0.766
Si028367m.g
Setaria italica
Si028367m.g
I
0.764
VIT_08s0040g00750
Vitis vinifera
VIT_08s0040g00750
I
0.764
30045.m000471
Ricinus communis
30045.m000471
I
0.764
cassava44297.m1
Manihot esculenta
cassava44297.m1
I
0.764
Cagra.1504s0017
Capsella grandiflora
Cagra.1504s0017
I
0.764
Carubv10003685m.g
Capsella rubella
Carubv10003685m.g
I
0.764
evm.TU.supercontig_51.84
Carica papaya
evm.TU.supercontig_51.84
I
0.764
Pavir.Ha01090
Panicum virgatum
Pavir.Ha01090
I
0.764
Bo2g155500
Brassica oleracea
Bo2g155500
N
0.762
Bra020571
Brassica rapa
Bra020571
N
0.762
fgenesh2_kg.6__2677__AT5G27880.1
Arabidopsis lyrata
fgenesh2_kg.6__2677__AT5G27880.1
N
0.762
Bostr.29827s0107
Boechera stricta
Bostr.29827s0107
N
0.762