MDP0000161241 (Malus domestica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 MDP0000161241 T143179_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G14580
M06797_2.00 		Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWWNNN		 Dap-seq
OMalley et al.(2016)
At1g14580_col_a 		0.827 0.929
AT1G14580
M06798_2.00 		Arabidopsis thaliana
NNTTTTGTCKTTTWSYD
HRSWAAAMGACAAAANN		 Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a 		0.827 0.929
IDD5
M06807_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTTSYD
HRSAAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
IDD5_colamp_a 		0.827 0.929
IDD5
M06808_2.00 		Arabidopsis thaliana
WTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAW		 Dap-seq
OMalley et al.(2016)
IDD5_col 		0.827 0.929
IDD7
M06803_2.00 		Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHHN		 Dap-seq
OMalley et al.(2016)
IDD7_col_a 		0.822 0.929
IDD4
M06809_2.00 		Arabidopsis thaliana
WWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWW		 Dap-seq
OMalley et al.(2016)
IDD4_col_a 		0.822 0.905
MGP
M06795_2.00 		Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAWHDND		 Dap-seq
OMalley et al.(2016)
MGP_col_a 		0.822 0.905
MGP
M06796_2.00 		Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHNN		 Dap-seq
OMalley et al.(2016)
MGP_colamp_a 		0.822 0.905
NUC
M06822_2.00 		Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD
HRVWARAMGACAAAANNNNN		 Dap-seq
OMalley et al.(2016)
NUC_col_a 		0.798 0.881
NUC
M06823_2.00 		Arabidopsis thaliana
NDTTTTGTCGTYTWNYD
HRNWARACGACAAAAHN		 Dap-seq
OMalley et al.(2016)
NUC_colamp_a 		0.798 0.881
JKD
M06818_2.00 		Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD		 Dap-seq
OMalley et al.(2016)
JKD_col_a 		0.792 0.905
IDD1
M06824_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTWBYD
HRVWAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a 		0.788 0.881
IDD1
M06825_2.00 		Arabidopsis thaliana
WDTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAHW		 Dap-seq
OMalley et al.(2016)
At5g66730_col 		0.788 0.881
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000161241 C2H2 ZF 145 166
MDP0000161241 C2H2 ZF 166 191

Links

Other C2H2 ZF family TFs
Other Malus domestica TFs

667 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000019668 Ailuropoda melanoleuca ENSAMEG00000019668 N
ZBTB38 Bos taurus ENSBTAG00000040061 N
ZBTB38 Canis familiaris ENSCAFG00000007664 N
ENSCSAG00000018910 Chlorocebus sabaeus ENSCSAG00000018910 N
ZBTB38 Dasypus novemcinctus ENSDNOG00000037832 N
ENSDORG00000005705 Dipodomys ordii ENSDORG00000005705 N
ZBTB38 Erinaceus europaeus ENSEEUG00000000264 N
ZBTB38 Felis catus ENSFCAG00000030922 N
ZBTB38 Homo sapiens ENSG00000177311 N
ZBTB38 Gorilla gorilla ENSGGOG00000023008 N
ZBTB38 Myotis lucifugus ENSMLUG00000012512 N
ZBTB38 Macaca mulatta ENSMMUG00000031526 N
ENSMPUG00000019344 Mustela putorius furo ENSMPUG00000019344 N
Zbtb38 Mus musculus ENSMUSG00000040433 N
ENSNLEG00000004569 Nomascus leucogenys ENSNLEG00000004569 N
ENSOARG00000015487 Ovis aries ENSOARG00000015487 N
ZBTB38 Otolemur garnettii ENSOGAG00000009394 N
ZBTB38 Ochotona princeps ENSOPRG00000009539 N
ENSP00000372635 Macaca fascicularis ENSP00000372635 N
ENSP00000406955-D1 Bos grunniens ENSP00000406955-D1 N
ENSPANG00000018989 Papio anubis ENSPANG00000018989 N
ZBTB38 Pan troglodytes ENSPTRG00000030108 N
ZBTB38 Pteropus vampyrus ENSPVAG00000017499 N
Zbtb38 Rattus norvegicus ENSRNOG00000012386 N
ENSSSCG00000021674 Sus scrofa ENSSSCG00000021674 N
ZBTB38 Sus scrofa ENSSSCG00000022073 N
ENSSTOG00000025333 Ictidomys tridecemlineatus ENSSTOG00000025333 N
ENSTSYG00000009951 Tarsius syrichta ENSTSYG00000009951 N
ZBTB38 Vicugna pacos ENSVPAG00000007353 N
Myotis_brandtii_ZBTB38_10028248 Myotis brandtii Myotis_brandtii_ZBTB38_10028248 N