Scas_Contig712.42 (Saccharomyces castellii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Scas_Contig712.42 T144974_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MIG2
M00027_2.00 		Saccharomyces cerevisiae
NNCCCCRBNN
NNVYGGGGNN		 PBM
Badis et al.(2008)
MIG2_2053 		0.822 0.891
MIG2
M01533_2.00 		Saccharomyces cerevisiae
NNCCCCRCNN
NNGYGGGGNN		 PBM
Zhu et al.(2009)
Mig2 		0.822 0.891
MIG2
M07457_2.00 		Saccharomyces cerevisiae
CCCCRCN
NGYGGGG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0338.1 		0.822 0.891
MIG2
M08525_2.00 		Saccharomyces cerevisiae
CCCCRCN
NGYGGGG		 Misc
DeBoer et al.(2011)
YGL209W_523 		0.822 0.891
MIG2
M10394_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MIG2_02 		0.822 0.891
MIG3
M00023_2.00 		Saccharomyces cerevisiae
NNCCCCGCAH
DTGCGGGGNN		 PBM
Badis et al.(2008)
MIG3_2054 		0.792 0.848
MIG3
M01529_2.00 		Saccharomyces cerevisiae
CYCCRBNNN
NNNVYGGRG		 PBM
Zhu et al.(2009)
Mig3 		0.792 0.848
MIG3
M07453_2.00 		Saccharomyces cerevisiae
CCCCRCN
NGYGGGG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0339.1 		0.792 0.848
MIG3
M08520_2.00 		Saccharomyces cerevisiae
CCCCRCN
NGYGGGG		 Misc
DeBoer et al.(2011)
YER028C_501 		0.792 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig712.42 C2H2 ZF 18 40
Scas_Contig712.42 C2H2 ZF 46 70

Links

Other C2H2 ZF family TFs
Other Saccharomyces castellii TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCAS_0E00610 Naumovozyma castellii NCAS_0E00610 I 0.827
SKUD_125302 Saccharomyces kudriavzevii SKUD_125302 I 0.822
MIG2 Saccharomyces cerevisiae YGL209W D 0.822
7028_YGL209W Saccharomyces mikatae 7028_YGL209W I 0.822
7577_YGL209W Saccharomyces paradoxus 7577_YGL209W I 0.822
8566_YGL209W Saccharomyces bayanus 8566_YGL209W I 0.817
KAFR_0I02370 Kazachstania africana KAFR_0I02370 I 0.792
MIG3 Saccharomyces cerevisiae YER028C D 0.792
ZYRO0E08426g Zygosaccharomyces rouxii ZYRO0E08426g I 0.792
NDAI_0I02900 Naumovozyma dairenensis NDAI_0I02900 I 0.787
SKUD_175702 Saccharomyces kudriavzevii SKUD_175702 I 0.786
CAGL0K09372g Candida glabrata CAGL0K09372g I 0.768
TBLA_0C04880 Tetrapisispora blattae TBLA_0C04880 I 0.768
6354_YER028C Saccharomyces bayanus 6354_YER028C I 0.768
TPHA_0D03400 Tetrapisispora phaffii TPHA_0D03400 I 0.766
TDEL_0D05860 Torulaspora delbrueckii TDEL_0D05860 I 0.762
ZBAI_04666 Zygosaccharomyces bailii ZBAI_04666 I 0.758
ZBAI_06707 Zygosaccharomyces bailii ZBAI_06707 I 0.758
CAGL0C02519g Candida glabrata CAGL0C02519g I 0.756
5988_YER028C Saccharomyces mikatae 5988_YER028C I 0.756