CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold607-EXSNAP2012.2
(
Pristionchus exspectatus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
scaffold607-EXSNAP2012.2
T156117_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold607-EXSNAP2012.2
C2H2 ZF
226
248
YKCKQCSKSFGQLSNLKVHLRTH
scaffold607-EXSNAP2012.2
C2H2 ZF
254
276
FKCEECGKEFTQLAHLQKHNLVH
scaffold607-EXSNAP2012.2
C2H2 ZF
282
304
HSCSICDKKFSSTSNLKTHLRLH
scaffold607-EXSNAP2012.2
C2H2 ZF
310
332
YSCDTCGAKFTQFVHLKLHKRLH
scaffold607-EXSNAP2012.2
C2H2 ZF
338
359
YNCGQCGKKYISPSGLRTHWKS
Links
Other
C2H2 ZF
family TFs
Other
Pristionchus exspectatus
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28779.m000140
Ricinus communis
28779.m000140
I
Aquca_027_00443
Aquilegia coerulea
Aquca_027_00443
I
AT1G19490
Arabidopsis thaliana
AT1G19490
D
Bo5g027510
Brassica oleracea
Bo5g027510
I
Bostr.7128s0552
Boechera stricta
Bostr.7128s0552
I
Bra025743
Brassica rapa
Bra025743
I
Cagra.1961s0053
Capsella grandiflora
Cagra.1961s0053
I
Carubv10011417m.g
Capsella rubella
Carubv10011417m.g
I
cassava31755.valid.m1
Manihot esculenta
cassava31755.valid.m1
I
Ca_00780
Cicer arietinum
Ca_00780
I
Ciclev10013541m.g
Citrus clementina
Ciclev10013541m.g
I
Cla017983
Citrullus lanatus
Cla017983
I
Cucsa.240980
Cucumis sativus
Cucsa.240980
I
evm.TU.supercontig_5.51
Carica papaya
evm.TU.supercontig_5.51
I
gene30252-v1.0-hybrid
Fragaria vesca
gene30252-v1.0-hybrid
I
GLYMA03G35101
Glycine max
GLYMA03G35101
I
GLYMA19G37801
Glycine max
GLYMA19G37801
I
Gorai.009G405400
Gossypium raimondii
Gorai.009G405400
I
GSMUA_Achr5G17460_001
Musa acuminata
GSMUA_Achr5G17460_001
N
GSMUA_Achr9G02570_001
Musa acuminata
GSMUA_Achr9G02570_001
N
Lus10003255.g
Linum usitatissimum
Lus10003255.g
I
Lus10035597.g
Linum usitatissimum
Lus10035597.g
I
MDP0000121603
Malus domestica
MDP0000121603
N
MDP0000147745
Malus domestica
MDP0000147745
I
MDP0000203904
Malus domestica
MDP0000203904
I
MDP0000374836
Malus domestica
MDP0000374836
N
MTR_7g104190
Medicago truncatula
MTR_7g104190
I
orange1.1g011345m.g
Citrus sinensis
orange1.1g011345m.g
I
PK09783.1
Cannabis sativa
PK09783.1
I
POPTR_0006s11550
Populus trichocarpa
POPTR_0006s11550
I
PRUPE_ppa003901mg
Prunus persica
PRUPE_ppa003901mg
I
SapurV1A.0208s0130
Salix purpurea
SapurV1A.0208s0130
I
Solyc09g009760.1
Solanum lycopersicum
Solyc09g009760.1
I
TCM_022516
Theobroma cacao
TCM_022516
I
Thhalv10009681m.g
Eutrema salsugineum
Thhalv10009681m.g
I
VIT_08s0007g03640
Vitis vinifera
VIT_08s0007g03640
I