CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SROB_0001223201
(
Schistosoma rodhaini
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SROB_0001223201
T156937_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SROB_0001223201-mRNA-1
C2H2 ZF
259
283
HPCNYRGCGKVFFSRTSLIYHKQCH
SROB_0001223201-mRNA-1
C2H2 ZF
289
313
YICTYPNCNLTFSNETLLKTHIQLH
SROB_0001223201-mRNA-1
C2H2 ZF
322
346
YSCTLPGCNKVFVTRECLIEHIRIH
SROB_0001223201-mRNA-1
C2H2 ZF
352
376
FLCDYPGCTHRFARRCNLFAHKRVH
SROB_0001223201-mRNA-1
C2H2 ZF
385
409
YHCIHDGCGKTFLYSRSLTEHMNVH
SROB_0001223201-mRNA-1
C2H2 ZF
415
439
YVCDYPGCEKSFTSKSYLYAHRRIH
Links
Other
C2H2 ZF
family TFs
Other
Schistosoma rodhaini
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Smp_046360
Schistosoma mansoni
Smp_046360
N
0.822
A_00150
Schistosoma haematobium
A_00150
N
0.768
SCUD_0001644601
Schistosoma curassoni
SCUD_0001644601
N
0.768
SMRZ_0002540101
Schistosoma margrebowiei
SMRZ_0002540101
N
0.768
SMTD_0000892601
Schistosoma mattheei
SMTD_0000892601
N
0.768
Sjc_0072480
Schistosoma japonicum
Sjc_0072480
N
0.765