CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SROB_0001927701
(
Schistosoma rodhaini
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SROB_0001927701
T156969_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
egrh-1
M00622_2.00
Caenorhabditis elegans
CSCCCMCR
YGKGGGSG
PBM
Narasimhan et al.(2015)
pTH9317
0.780
0.768
sr
M06072_2.00
Drosophila melanogaster
HVMCGCCCMCVYMH
DKRBGKGGGCGKBD
B1H
Zhu et al.(2011)
sr_SANGER_5_FBgn0003499
0.764
0.739
sr
M06073_2.00
Drosophila melanogaster
NNMCRCCCMCVHNN
NNDBGKGGGYGKNN
B1H
Zhu et al.(2011)
sr_SOLEXA_5_FBgn0003499
0.764
0.739
Egr1
M01864_2.00
Mus musculus
CCCMCGYNN
NNRCGKGGG
PBM
Weirauch et al.(2014)
pTH5337
0.761
0.768
Egr1
M00375_2.00
Mus musculus
NCCYMCDNN
NNHGKRGGN
PBM
Berger et al.(2006)
Zif268
0.761
0.768
EGR1
M02883_2.00
Homo sapiens
NMCGCCCMCGCANN
NNTGCGKGGGCGKN
SELEX
Jolma et al.(2013)
EGR1_1
0.761
0.768
EGR1
M02884_2.00
Homo sapiens
HMCGCCCACGCAHW
WDTGCGTGGGCGKD
SELEX
Jolma et al.(2013)
EGR1_2
0.761
0.768
Egr1
M02932_2.00
Mus musculus
HHMCGCCCMCBCAHHH
DDDTGVGKGGGCGKDD
SELEX
Jolma et al.(2013)
Egr1_1
0.761
0.768
EGR1
M04437_2.00
Homo sapiens
NNCRCCCMCRCNN
NNGYGKGGGYGNN
SELEX
Yin et al.(2017)
EGR1_eDBD_HT-SELEX
0.761
0.768
Egr1
M05860_2.00
Mus musculus
NNMCRCCCMCGCN
NGCGKGGGYGKNN
SMiLE-seq
Isakova et al.(2017)
EGR1
0.761
0.768
EGR1
M07927_2.00
Homo sapiens
NVBNNNNBCCGCCCMCGCNB
VNGCGKGGGCGGVNNNNVBN
ChIP-seq
Gerstein et al.(2012)
GM12878_EGR1_HudsonAlpha
0.761
0.768
EGR1
M07928_2.00
Homo sapiens
BNCCGCCCMCGCNBB
VVNGCGKGGGCGGNV
ChIP-seq
Gerstein et al.(2012)
H1-hESC_EGR1_HudsonAlpha
0.761
0.768
EGR1
M07929_2.00
Homo sapiens
NNNNNNBNNCCRCCCMCGCN
NGCGKGGGYGGNNVNNNNNN
ChIP-seq
Gerstein et al.(2012)
K562_EGR1_HudsonAlpha
0.761
0.768
EGR1
M08882_2.00
Homo sapiens
BHNCCDCCCMCDCHBNB
VNVDGHGKGGGHGGNDV
Misc
Kulakovskiy et al.(2013)
EGR1_HUMAN.H11MO.0.A
0.761
0.768
Egr1
M08996_2.00
Mus musculus
YYCCRCCCMCGCNB
VNGCGKGGGYGGRR
Misc
Kulakovskiy et al.(2013)
EGR1_MOUSE.H11MO.0.A
0.761
0.768
EGR1
M09506_2.00
Homo sapiens
CRCCCMCRCA
TGYGKGGGYG
Misc
Heinz et al.(2010)
K562-Egr1_GSE32465
0.761
0.768
EGR1
M10188_2.00
Homo sapiens
MCGCCYACGCAW
WTGCGTRGGCGK
Transfac
Matys et al.(2006)
V$EGR1_01
0.761
0.768
EGR1
M10189_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_02
0.761
0.768
EGR1
M10190_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_09
0.761
0.768
EGR1
M10191_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_11
0.761
0.768
EGR1
M10192_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_12
0.761
0.768
EGR1
M10193_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_13
0.761
0.768
EGR1
M10194_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_15
0.761
0.768
EGR1
M10195_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_Q3
0.761
0.768
EGR1
M10196_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_Q6
0.761
0.768
EGR1
M04438_2.00
Homo sapiens
NHCDCCCMCNYNN
NNRNGKGGGHGDN
SELEX
Yin et al.(2017)
EGR1_eDBD_Methyl-HT-SELEX
0.761
0.768
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SROB_0001927701-mRNA-1
C2H2 ZF
380
402
HKCTSCNKCFSRSDELTRHARIH
SROB_0001927701-mRNA-1
C2H2 ZF
408
430
FKCAECQREFSRSDHLTTHMRTH
SROB_0001927701-mRNA-1
C2H2 ZF
436
458
FVCDICGRSFARSDERKRHTKVH
Links
Other
C2H2 ZF
family TFs
Other
Schistosoma rodhaini
TFs
182 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Smp_026270
Schistosoma mansoni
Smp_026270
I
0.827
A_02157
Schistosoma haematobium
A_02157
I
0.827
SCUD_0000035401
Schistosoma curassoni
SCUD_0000035401
I
0.827
Sjc_0029840
Schistosoma japonicum
Sjc_0029840
I
0.824
csin104204
Clonorchis sinensis
csin104204
I
0.812
T265_07014
Opisthorchis viverrini
T265_07014
I
0.812
ECPE_0000155301
Echinostoma caproni
ECPE_0000155301
I
0.798
SBAD_0001187401
Soboliphyme baturini
SBAD_0001187401
I
0.796
D917_01971
Trichinella nativa
D917_01971
I
0.792
L596_g5772
Steinernema carpocapsae
L596_g5772
I
0.792
L892_g3913
Steinernema scapterisci
L892_g3913
I
0.792
L898_g4875
Steinernema monticolum
L898_g4875
I
0.792
D918_01649
Trichuris suis
D918_01649
I
0.788
L889_g30195
Steinernema feltiae
L889_g30195
I
0.788
L893_g26806
Steinernema glaseri
L893_g26806
I
0.788
TTRE_0000209701
Trichuris trichiura
TTRE_0000209701
I
0.788
D915_08008
Fasciola hepatica
D915_08008
I
0.787
PXEA_0003161501
Protopolystoma xenopodis
PXEA_0003161501
I
0.781
WUBG_00846
Wuchereria bancrofti
WUBG_00846
I
0.780
Bm2429
Brugia malayi
Bm2429
I
0.780
CBG07600
Caenorhabditis briggsae
CBG07600
I
0.780
CBN14580
Caenorhabditis brenneri
CBN14580
I
0.780
CJA07724
Caenorhabditis japonica
CJA07724
I
0.780
CRE15316
Caenorhabditis remanei
CRE15316
I
0.780
LOAG_00574
Loa loa
LOAG_00574
I
0.780
WBGene00241269
Onchocerca volvulus
WBGene00241269
I
0.780
BTMF_0000380401
Brugia timori
BTMF_0000380401
I
0.780
nAv.1.0.1.g06838
Acanthocheilonema viteae
nAv.1.0.1.g06838
I
0.780
nDi.2.2.2.g01941
Dirofilaria immitis
nDi.2.2.2.g01941
I
0.780
nDi.2.2.2.g04849
Dirofilaria immitis
nDi.2.2.2.g04849
I
0.780
nDi.2.2.2.g10231
Dirofilaria immitis
nDi.2.2.2.g10231
I
0.780
nDi.2.2.2.g10233
Dirofilaria immitis
nDi.2.2.2.g10233
I
0.780
nOo.2.0.1.g00761
Onchocerca ochengi
nOo.2.0.1.g00761
I
0.780
OFLC_0000114001
Onchocerca flexuosa
OFLC_0000114001
I
0.780
RSKR_0000852700
Rhabditophanes kr3021
RSKR_0000852700
I
0.780
PTRK_0000739300
Parastrongyloides trichosuri
PTRK_0000739300
I
0.777
SPAL_0001308900
Strongyloides papillosus
SPAL_0001308900
I
0.777
SSTP_0000848300
Strongyloides stercoralis
SSTP_0000848300
I
0.777
SVE_0359700
Strongyloides venezuelensis
SVE_0359700
I
0.777
CBG15303
Caenorhabditis briggsae
CBG15303
I
0.776
ACOC_0001010801
Angiostrongylus costaricensis
ACOC_0001010801
I
0.776
ANCCAN_00201
Ancylostoma caninum
ANCCAN_00201
I
0.776
ANCCEY_05459
Ancylostoma ceylanicum
ANCCEY_05459
I
0.776
ANCDUO_04687
Ancylostoma duodenale
ANCDUO_04687
I
0.776
ASU_03721
Ascaris suum
ASU_03721
I
0.776
BXY_0899900
Bursaphelenchus xylophilus
BXY_0899900
I
0.776
DICVIV_09967
Dictyocaulus viviparus
DICVIV_09967
I
0.776
EEL_0000568101
Elaeophora elaphi
EEL_0000568101
I
0.776
HCOI01030300
Haemonchus contortus
HCOI01030300
I
0.776
HPLM_0000563501
Haemonchus placei
HPLM_0000563501
I
0.776
NBR_0001794801
Nippostrongylus brasiliensis
NBR_0001794801
I
0.776
SVUK_0000950901
Strongylus vulgaris
SVUK_0000950901
I
0.776
TCNE_0000904301
Toxocara canis
TCNE_0000904301
I
0.776
DME_0000200401
Dracunculus medinensis
DME_0000200401
I
0.772
CapteG179417
Capitella teleta
CapteG179417
I
0.769
NECAME_02405
Necator americanus
NECAME_02405
I
0.769
nLs.2.1.2.g05421
Litomosoides sigmodontis
nLs.2.1.2.g05421
I
0.769
OESDEN_04362
Oesophagostomum dentatum
OESDEN_04362
I
0.769
ECANG7_02721
Echinococcus canadensis
ECANG7_02721
I
0.766
EmuJ_001017500
Echinococcus multilocularis
EmuJ_001017500
I
0.766
HDID_0000928001
Hymenolepis diminuta
HDID_0000928001
I
0.766
MCOS_0000604201
Mesocestoides corti
MCOS_0000604201
I
0.766
TASK_0000611101
Taenia asiatica
TASK_0000611101
I
0.766
TsM_000207500
Taenia solium
TsM_000207500
I
0.766
TTAC_0000857601
Hydatigera taeniaeformis
TTAC_0000857601
I
0.766
CpipJ_CPIJ010041
Culex pipiens
CpipJ_CPIJ010041
I
0.764
AGAP002773
Anopheles gambiae
AGAP002773
I
0.764
CGI_10022978
Crassostrea gigas
CGI_10022978
I
0.764
CPIJ010041
Culex quinquefasciatus
CPIJ010041
I
0.764
DAPPUDRAFT_96734
Daphnia pulex
DAPPUDRAFT_96734
I
0.764
sr
Drosophila melanogaster
FBgn0003499
D
0.764
GG22637
Drosophila erecta
FBgn0114808
I
0.764
GH15079
Drosophila grimshawi
FBgn0122554
I
0.764
GI23713
Drosophila mojavensis
FBgn0146438
I
0.764
GM15276
Drosophila sechellia
FBgn0170196
I
0.764
GD19200
Drosophila simulans
FBgn0190705
I
0.764
GJ23272
Drosophila virilis
FBgn0210374
I
0.764
GK11242
Drosophila willistoni
FBgn0213253
I
0.764
GA27565
Drosophila pseudoobscura
FBgn0248930
I
0.764
HMEL006505
Heliconius melpomene
HMEL006505
I
0.764
LotgiG89896
Lottia gigantea
LotgiG89896
I
0.764
SMAR001323
Strigamia maritima
SMAR001323
I
0.764
Ocbimv22022722m.g
Octopus bimaculoides
Ocbimv22022722m.g
I
0.764
HHAL003881-PA
Halyomorpha halys
HHAL003881-PA
I
0.764
LCUP004430
Lucilia cuprina
LCUP004430
I
0.764
AATE013203
Anopheles atroparvus
AATE013203
I
0.764
AFAF001692
Anopheles farauti
AFAF001692
I
0.764
AFUN008124
Anopheles funestus
AFUN008124
I
0.764
AMEC007413
Anopheles melas
AMEC007413
I
0.764
AMEM006159
Anopheles merus
AMEM006159
I
0.764
AQUA009765
Anopheles quadriannulatus
AQUA009765
I
0.764
ASTEI00025
Anopheles stephensi
ASTEI00025
I
0.764
MDOA011652
Musca domestica
MDOA011652
I
0.764
DILT_0001982301
Diphyllobothrium latum
DILT_0001982301
I
0.764
SMUV_0000838501
Syphacia muris
SMUV_0000838501
I
0.764
ENSAMEG00000016544
Ailuropoda melanoleuca
ENSAMEG00000016544
I
0.761
ENSAPLG00000002018
Anas platyrhynchos
ENSAPLG00000002018
I
0.761
EGR1
Bos taurus
ENSBTAG00000010069
I
0.761
EGR1
Canis familiaris
ENSCAFG00000001254
I
0.761
EGR1
Callithrix jacchus
ENSCJAG00000006771
I
0.761
EGR1
Cavia porcellus
ENSCPOG00000027141
I
0.761
ENSCSAG00000013111
Chlorocebus sabaeus
ENSCSAG00000013111
I
0.761
EGR1
Dasypus novemcinctus
ENSDNOG00000034151
I
0.761
EGR1
Equus caballus
ENSECAG00000014338
I
0.761
EGR1
Echinops telfairi
ENSETEG00000017735
I
0.761
ENSFALG00000003413
Ficedula albicollis
ENSFALG00000003413
I
0.761
EGR1
Felis catus
ENSFCAG00000025420
I
0.761
EGR1
Homo sapiens
ENSG00000120738
D
0.761
EGR1
Gallus gallus
ENSGALG00000007669
I
0.761
EGR1
Gorilla gorilla
ENSGGOG00000008122
I
0.761
ENSLACG00000005149
Latimeria chalumnae
ENSLACG00000005149
I
0.761
EGR1
Loxodonta africana
ENSLAFG00000016505
I
0.761
ENSMEUG00000012133
Macropus eugenii
ENSMEUG00000012133
I
0.761
EGR1
Meleagris gallopavo
ENSMGAG00000009526
I
0.761
EGR1
Microcebus murinus
ENSMICG00000012986
I
0.761
EGR1
Myotis lucifugus
ENSMLUG00000016841
I
0.761
EGR1
Macaca mulatta
ENSMMUG00000018025
I
0.761
ENSMPUG00000009343
Mustela putorius furo
ENSMPUG00000009343
I
0.761
Egr1
Mus musculus
ENSMUSG00000038418
D
0.761
ENSNLEG00000008963
Nomascus leucogenys
ENSNLEG00000008963
I
0.761
EGR1
Oryctolagus cuniculus
ENSOCUG00000008439
I
0.761
EGR1
Otolemur garnettii
ENSOGAG00000033961
I
0.761
ENSPANG00000012366
Papio anubis
ENSPANG00000012366
I
0.761
EGR1
Procavia capensis
ENSPCAG00000010699
I
0.761
ENSPSIG00000016357
Pelodiscus sinensis
ENSPSIG00000016357
I
0.761
EGR1
Pteropus vampyrus
ENSPVAG00000008351
I
0.761
Egr1
Rattus norvegicus
ENSRNOG00000019422
I
0.761
ENSSHAG00000012359
Sarcophilus harrisii
ENSSHAG00000012359
I
0.761
EGR1
Sus scrofa
ENSSSCG00000014336
I
0.761
ENSSTOG00000028129
Ictidomys tridecemlineatus
ENSSTOG00000028129
I
0.761
EGR1
Taeniopygia guttata
ENSTGUG00000000003
I
0.761
ENSTSYG00000011659
Tarsius syrichta
ENSTSYG00000011659
I
0.761
EGR1
Tursiops truncatus
ENSTTRG00000005503
I
0.761
Aan_R011027
Calypte anna
Aan_R011027
I
0.761
Afo_R012195
Aptenodytes forsteri
Afo_R012195
I
0.761
Cmyd_10006466
Chelonia mydas
Cmyd_10006466
I
0.761
ENSBTAP00000013284-D1
Bos grunniens
ENSBTAP00000013284-D1
I
0.761
ENSMMUP00000023682
Macaca fascicularis
ENSMMUP00000023682
I
0.761
Myotis_brandtii_EGR1_10027790
Myotis brandtii
Myotis_brandtii_EGR1_10027790
I
0.761
Ogr18097
Ophisaurus gracilis
Ogr18097
I
0.761
Pvit_11315
Pogona vitticeps
Pvit_11315
I
0.761
AAT71995
Xenopus tropicalis
AAT71995
I
0.761
egr1.S
Xenopus laevis
XB-GENE-6252570
I
0.761
egr1
Xenopus tropicalis
XB-GENE-853412
I
0.761
egr1.L
Xenopus laevis
XB-GENE-853419
I
0.761
MhA1_Contig770.frz3.gene18
Meloidogyne hapla
MhA1_Contig770.frz3.gene18
I
0.761
ACEP23410
Atta cephalotes
ACEP23410
I
0.760
ACYPI000882
Acyrthosiphon pisum
ACYPI000882
I
0.760
Aqu1.227156
Amphimedon queenslandica
Aqu1.227156
I
0.760
BGIBMGA011498
Bombyx mori
BGIBMGA011498
I
0.760
GB50091
Apis mellifera
GB50091
I
0.760
ISCW010121
Ixodes scapularis
ISCW010121
I
0.760
KGM_18675
Danaus plexippus
KGM_18675
I
0.760
L798_06466
Zootermopsis nevadensis
L798_06466
I
0.760
MCINX002158
Melitaea cinxia
MCINX002158
I
0.760
NV19003
Nasonia vitripennis
NV19003
I
0.760
PHUM239230
Pediculus humanus
PHUM239230
I
0.760
RPRC014701
Rhodnius prolixus
RPRC014701
I
0.760
SINV20926
Solenopsis invicta
SINV20926
I
0.760
TC004846
Tribolium castaneum
TC004846
I
0.760
tetur09g02570
Tetranychus urticae
tetur09g02570
I
0.760
YQE_08157
Dendroctonus ponderosae
YQE_08157
I
0.760
CLEC002574
Cimex lectularius
CLEC002574
I
0.760
BGLB005339
Biomphalaria glabrata
BGLB005339
I
0.760
PPAI005020
Phlebotomus papatasi
PPAI005020
I
0.760
GPLIN_000308100
Globodera pallida
GPLIN_000308100
I
0.760
GPUH_0001720001
Gongylonema pulchrum
GPUH_0001720001
I
0.760
GPUH_0001765101
Gongylonema pulchrum
GPUH_0001765101
I
0.760
scaffold4-EXSNAP2012.32
Pristionchus exspectatus
scaffold4-EXSNAP2012.32
I
0.760
SMU15014531
Schmidtea mediterranea
SMU15014531
N
0.757
ENSAMXG00000007269
Astyanax mexicanus
ENSAMXG00000007269
I
0.756
egr3
Danio rerio
ENSDARG00000089156
I
0.756
egr3
Gasterosteus aculeatus
ENSGACG00000010820
I
0.756
ENSGMOG00000005595
Gadus morhua
ENSGMOG00000005595
I
0.756
ENSLOCG00000014936
Lepisosteus oculatus
ENSLOCG00000014936
I
0.756
ENSONIG00000011752
Oreochromis niloticus
ENSONIG00000011752
I
0.756
egr3
Oryzias latipes
ENSORLG00000010985
I
0.756
ENSPFOG00000009968
Poecilia formosa
ENSPFOG00000009968
I
0.756
ENSPFOG00000009991
Poecilia formosa
ENSPFOG00000009991
I
0.756
egr3
Tetraodon nigroviridis
ENSTNIG00000010816
I
0.756
egr3
Takifugu rubripes
ENSTRUG00000002142
I
0.756
ENSXMAG00000001144
Xiphophorus maculatus
ENSXMAG00000001144
I
0.756