CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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29333.m001059
(
Ricinus communis
)
CBF/NF-Y
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02045 (CBFB_NFYA)
IPR001289
29333.m001059
T160559_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
29333.m001059
CBF/NF-Y
156
211
GPIFVNPKQYHGIIRRRKSRAKAELENRPIRKRKPYMHLSRHLHAMRRPRGTGGRF
Links
Other
CBF/NF-Y
family TFs
Other
Ricinus communis
TFs
190 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_09086
Aegilops tauschii
F775_09086
N
0.714
AMTR_s00004p00174960
Amborella trichopoda
AMTR_s00004p00174960
N
0.732
AMTR_s00103p00144230
Amborella trichopoda
AMTR_s00103p00144230
I
0.714
AMTR_s00155p00071520
Amborella trichopoda
AMTR_s00155p00071520
N
0.714
Aquca_009_00676
Aquilegia coerulea
Aquca_009_00676
N
0.786
Aquca_076_00118
Aquilegia coerulea
Aquca_076_00118
N
0.714
Al_scaffold_0481_2
Arabidopsis lyrata
Al_scaffold_0481_2
N
0.732
UNE8
Arabidopsis lyrata
fgenesh2_kg.3__563__AT3G05690.1
N
0.714
fgenesh2_kg.4__1496__AT2G34720.1
Arabidopsis lyrata
fgenesh2_kg.4__1496__AT2G34720.1
N
0.732
NF-YA9
Arabidopsis lyrata
scaffold_302497.1
N
0.714
NF-YA10
Arabidopsis lyrata
scaffold_600636.1
N
0.792
NFYA4
Arabidopsis thaliana
AT2G34720
N
0.732
UNE8
Arabidopsis thaliana
AT3G05690
N
0.714
NFYA9
Arabidopsis thaliana
AT3G20910
N
0.714
NFYA10
Arabidopsis thaliana
AT5G06510
N
0.792
Bostr.13129s0320
Boechera stricta
Bostr.13129s0320
N
0.792
Bostr.15697s0348
Boechera stricta
Bostr.15697s0348
N
0.714
Bostr.19424s0556
Boechera stricta
Bostr.19424s0556
N
0.714
Bostr.23794s0634
Boechera stricta
Bostr.23794s0634
N
0.732
Bostr.2570s0105
Boechera stricta
Bostr.2570s0105
N
0.714
BRADI1G11800
Brachypodium distachyon
BRADI1G11800
I
0.732
Bo1g150420
Brassica oleracea
Bo1g150420
N
0.750
Bo3g060160
Brassica oleracea
Bo3g060160
N
0.750
Bo4g039370
Brassica oleracea
Bo4g039370
N
0.714
Bo5g145140
Brassica oleracea
Bo5g145140
N
0.750
Bo9g176100
Brassica oleracea
Bo9g176100
N
0.732
Bra001164
Brassica rapa
Bra001164
N
0.732
Bra005397
Brassica rapa
Bra005397
N
0.714
Bra009200
Brassica rapa
Bra009200
N
0.732
Bra040529
Brassica rapa
Bra040529
N
0.750
PK00926.1
Cannabis sativa
PK00926.1
N
0.732
PK11147.1
Cannabis sativa
PK11147.1
I
0.714
PK20005.1
Cannabis sativa
PK20005.1
N
0.714
PK21261.1
Cannabis sativa
PK21261.1
I
0.750
PK26326.1
Cannabis sativa
PK26326.1
N
0.750
Cagra.10399s0005
Capsella grandiflora
Cagra.10399s0005
N
0.714
Cagra.1508s0155
Capsella grandiflora
Cagra.1508s0155
N
0.714
Cagra.2108s0005
Capsella grandiflora
Cagra.2108s0005
N
0.732
Cagra.2117s0012
Capsella grandiflora
Cagra.2117s0012
N
0.774
Cagra.3346s0024
Capsella grandiflora
Cagra.3346s0024
N
0.714
Carubv10001713m.g
Capsella rubella
Carubv10001713m.g
N
0.774
Carubv10010359m.g
Capsella rubella
Carubv10010359m.g
N
0.714
Carubv10014086m.g
Capsella rubella
Carubv10014086m.g
N
0.732
Carubv10014289m.g
Capsella rubella
Carubv10014289m.g
N
0.714
Carubv10024092m.g
Capsella rubella
Carubv10024092m.g
N
0.714
evm.TU.supercontig_104.9
Carica papaya
evm.TU.supercontig_104.9
N
0.821
evm.TU.supercontig_125.6
Carica papaya
evm.TU.supercontig_125.6
I
0.732
evm.TU.supercontig_20.45
Carica papaya
evm.TU.supercontig_20.45
N
0.732
Ca_00866
Cicer arietinum
Ca_00866
N
0.786
Ca_14455
Cicer arietinum
Ca_14455
N
0.768
Ca_20250
Cicer arietinum
Ca_20250
N
0.714
Cla000845
Citrullus lanatus
Cla000845
N
0.732
Cla009990
Citrullus lanatus
Cla009990
N
0.714
Cla015490
Citrullus lanatus
Cla015490
I
0.732
Cla017115
Citrullus lanatus
Cla017115
N
0.714
Cla017884
Citrullus lanatus
Cla017884
N
0.786
Ciclev10005144m.g
Citrus clementina
Ciclev10005144m.g
I
0.714
Ciclev10012232m.g
Citrus clementina
Ciclev10012232m.g
N
0.857
Ciclev10016491m.g
Citrus clementina
Ciclev10016491m.g
N
0.714
orange1.1g017825m.g
Citrus sinensis
orange1.1g017825m.g
I
0.714
orange1.1g021081m.g
Citrus sinensis
orange1.1g021081m.g
N
0.857
orange1.1g026474m.g
Citrus sinensis
orange1.1g026474m.g
N
0.714
Cucsa.048230
Cucumis sativus
Cucsa.048230
N
0.714
Cucsa.127910
Cucumis sativus
Cucsa.127910
I
0.732
Cucsa.241980
Cucumis sativus
Cucsa.241980
N
0.786
Cucsa.374630
Cucumis sativus
Cucsa.374630
I
0.714
Eucgr.A02381
Eucalyptus grandis
Eucgr.A02381
N
0.714
Eucgr.A02570
Eucalyptus grandis
Eucgr.A02570
N
0.818
Eucgr.K01943
Eucalyptus grandis
Eucgr.K01943
N
0.732
Thhalv10014346m.g
Eutrema salsugineum
Thhalv10014346m.g
N
0.786
Thhalv10017261m.g
Eutrema salsugineum
Thhalv10017261m.g
N
0.732
Thhalv10021244m.g
Eutrema salsugineum
Thhalv10021244m.g
N
0.750
gene18295-v1.0-hybrid
Fragaria vesca
gene18295-v1.0-hybrid
N
0.804
gene28941-v1.0-hybrid
Fragaria vesca
gene28941-v1.0-hybrid
N
0.714
GLYMA02G35190
Glycine max
GLYMA02G35190
N
0.786
GLYMA03G36140
Glycine max
GLYMA03G36140
N
0.750
GLYMA05G29970
Glycine max
GLYMA05G29970
N
0.714
GLYMA08G13090
Glycine max
GLYMA08G13090
N
0.750
GLYMA09G02770
Glycine max
GLYMA09G02770
N
0.714
GLYMA10G10240
Glycine max
GLYMA10G10240
N
0.786
GLYMA12G36540
Glycine max
GLYMA12G36540
I
0.714
GLYMA13G27230
Glycine max
GLYMA13G27230
I
0.732
GLYMA15G13660
Glycine max
GLYMA15G13660
N
0.714
GLYMA19G38800
Glycine max
GLYMA19G38800
N
0.750
Gorai.002G151800
Gossypium raimondii
Gorai.002G151800
I
0.732
Gorai.002G234400
Gossypium raimondii
Gorai.002G234400
N
0.768
Gorai.003G093300
Gossypium raimondii
Gorai.003G093300
I
0.732
Gorai.004G066000
Gossypium raimondii
Gorai.004G066000
I
0.714
Gorai.004G172100
Gossypium raimondii
Gorai.004G172100
I
0.714
Gorai.007G363800
Gossypium raimondii
Gorai.007G363800
N
0.750
Gorai.009G115000
Gossypium raimondii
Gorai.009G115000
N
0.714
Gorai.011G004400
Gossypium raimondii
Gorai.011G004400
N
0.732
LPERR03G25340
Leersia perrieri
LPERR03G25340
I
0.714
LPERR12G16030
Leersia perrieri
LPERR12G16030
N
0.714
Lus10011326.g
Linum usitatissimum
Lus10011326.g
I
0.714
Lus10012202.g
Linum usitatissimum
Lus10012202.g
I
0.714
Lus10013592.g
Linum usitatissimum
Lus10013592.g
N
0.804
Lus10021259.g
Linum usitatissimum
Lus10021259.g
N
0.804
chr1.CM0361.430.nc
Lotus japonicus
chr1.CM0361.430.nc
N
0.732
chr5.CM0571.20.nd
Lotus japonicus
chr5.CM0571.20.nd
N
0.786
MDP0000129029
Malus domestica
MDP0000129029
N
0.786
MDP0000183865
Malus domestica
MDP0000183865
I
0.773
MDP0000279028
Malus domestica
MDP0000279028
N
0.714
MDP0000375005
Malus domestica
MDP0000375005
N
0.804
MDP0000588222
Malus domestica
MDP0000588222
N
0.786
MDP0000785523
Malus domestica
MDP0000785523
N
0.786
MDP0000948645
Malus domestica
MDP0000948645
N
0.804
cassava24161.valid.m1
Manihot esculenta
cassava24161.valid.m1
N
0.714
cassava24247.valid.m1
Manihot esculenta
cassava24247.valid.m1
N
0.839
cassava31873.valid.m1
Manihot esculenta
cassava31873.valid.m1
N
0.732
cassava31874.valid.m1
Manihot esculenta
cassava31874.valid.m1
N
0.732
cassava38260.valid.m1
Manihot esculenta
cassava38260.valid.m1
I
0.732
cassava41983.valid.m1
Manihot esculenta
cassava41983.valid.m1
N
0.839
MTR_1g056530
Medicago truncatula
MTR_1g056530
N
0.768
MTR_7g106450
Medicago truncatula
MTR_7g106450
N
0.750
mg014677m
Mimulus guttatus
mg014677m
N
0.714
mgf012950m
Mimulus guttatus
mgf012950m
I
0.714
mgf016940m
Mimulus guttatus
mgf016940m
N
0.714
mgf025421m
Mimulus guttatus
mgf025421m
N
0.821
GSMUA_Achr2G12930_001
Musa acuminata
GSMUA_Achr2G12930_001
N
0.714
GSMUA_Achr3G29730_001
Musa acuminata
GSMUA_Achr3G29730_001
N
0.732
GSMUA_Achr4G03600_001
Musa acuminata
GSMUA_Achr4G03600_001
N
0.714
GSMUA_Achr4G11090_001
Musa acuminata
GSMUA_Achr4G11090_001
I
0.732
GSMUA_Achr4G28390_001
Musa acuminata
GSMUA_Achr4G28390_001
N
0.714
GSMUA_Achr4G31420_001
Musa acuminata
GSMUA_Achr4G31420_001
N
0.714
OBART03G30600
Oryza barthii
OBART03G30600
I
0.714
OBART12G19060
Oryza barthii
OBART12G19060
N
0.714
OB03G35340
Oryza brachyantha
OB03G35340
N
0.714
OB03G37700
Oryza brachyantha
OB03G37700
I
0.714
OB12G25960
Oryza brachyantha
OB12G25960
N
0.714
ORGLA03G0280400
Oryza glaberrima
ORGLA03G0280400
I
0.714
ORGLA07G0030900
Oryza glaberrima
ORGLA07G0030900
N
0.714
ORGLA12G0163500
Oryza glaberrima
ORGLA12G0163500
N
0.714
OGLUM03G30810
Oryza glumaepatula
OGLUM03G30810
I
0.714
OGLUM07G02990
Oryza glumaepatula
OGLUM07G02990
N
0.714
OGLUM12G20730
Oryza glumaepatula
OGLUM12G20730
N
0.714
BGIOSGA013378
Oryza indica
BGIOSGA013378
I
0.714
BGIOSGA024793
Oryza indica
BGIOSGA024793
N
0.714
OMERI03G26770
Oryza meridionalis
OMERI03G26770
I
0.714
OMERI07G18960
Oryza meridionalis
OMERI07G18960
N
0.714
OMERI12G13600
Oryza meridionalis
OMERI12G13600
N
0.714
ONIVA03G31950
Oryza nivara
ONIVA03G31950
I
0.714
ONIVA07G02150
Oryza nivara
ONIVA07G02150
N
0.714
ONIVA12G18060
Oryza nivara
ONIVA12G18060
N
0.714
OPUNC03G27900
Oryza punctata
OPUNC03G27900
I
0.714
OPUNC07G03530
Oryza punctata
OPUNC07G03530
N
0.714
ORUFI03G31840
Oryza rufipogon
ORUFI03G31840
I
0.714
OS03G0696300
Oryza sativa
OS03G0696300
I
0.714
OS07G0158500
Oryza sativa
OS07G0158500
N
0.714
Pavir.Ia01146
Panicum virgatum
Pavir.Ia01146
N
0.732
Pavir.Ib04124
Panicum virgatum
Pavir.Ib04124
N
0.732
PDK_20s1414531g001
Phoenix dactylifera
PDK_20s1414531g001
N
0.706
POPTR_0006s05210
Populus trichocarpa
POPTR_0006s05210
I
0.732
POPTR_0006s21640
Populus trichocarpa
POPTR_0006s21640
N
0.821
POPTR_0016s06860
Populus trichocarpa
POPTR_0016s06860
N
0.804
Pm026038
Prunus mume
Pm026038
N
0.804
PRUPE_ppa017366mg
Prunus persica
PRUPE_ppa017366mg
N
0.804
30075.m001182
Ricinus communis
30075.m001182
N
0.714
SapurV1A.0133s0410
Salix purpurea
SapurV1A.0133s0410
I
0.714
SapurV1A.0258s0010
Salix purpurea
SapurV1A.0258s0010
N
0.768
SapurV1A.0980s0030
Salix purpurea
SapurV1A.0980s0030
N
0.768
SapurV1A.1209s0040
Salix purpurea
SapurV1A.1209s0040
N
0.786
SELMODRAFT_38090
Selaginella moellendorffii
SELMODRAFT_38090
N
0.732
SELMODRAFT_438143
Selaginella moellendorffii
SELMODRAFT_438143
N
0.732
Si022607m.g
Setaria italica
Si022607m.g
N
0.714
Si036465m.g
Setaria italica
Si036465m.g
N
0.732
Solyc01g006930.2
Solanum lycopersicum
Solyc01g006930.2
N
0.764
Solyc01g087240.2
Solanum lycopersicum
Solyc01g087240.2
I
0.714
Solyc10g081840.1
Solanum lycopersicum
Solyc10g081840.1
N
0.709
PGSC0003DMG400011806
Solanum tuberosum
PGSC0003DMG400011806
N
0.714
PGSC0003DMG400021365
Solanum tuberosum
PGSC0003DMG400021365
N
0.764
PGSC0003DMG400028144
Solanum tuberosum
PGSC0003DMG400028144
N
0.709
Sb01g013430
Sorghum bicolor
Sb01g013430
N
0.732
TCM_022984
Theobroma cacao
TCM_022984
N
0.786
TCM_024732
Theobroma cacao
TCM_024732
I
0.732
TCM_026909
Theobroma cacao
TCM_026909
N
0.714
Traes_4AL_7C4C68FD0
Triticum aestivum
Traes_4AL_7C4C68FD0
I
0.732
Traes_4BS_B7B7EFF37
Triticum aestivum
Traes_4BS_B7B7EFF37
I
0.732
Traes_4DS_AFBE29C20
Triticum aestivum
Traes_4DS_AFBE29C20
I
0.732
Traes_5AS_378F353CF
Triticum aestivum
Traes_5AS_378F353CF
N
0.714
Traes_5BS_F1DE20B4B
Triticum aestivum
Traes_5BS_F1DE20B4B
N
0.714
Traes_5DS_443F1993A
Triticum aestivum
Traes_5DS_443F1993A
N
0.714
TRIUR3_09920
Triticum urartu
TRIUR3_09920
I
0.732
TRIUR3_28596
Triticum urartu
TRIUR3_28596
N
0.714
VIT_08s0007g08250
Vitis vinifera
VIT_08s0007g08250
I
0.714
VIT_08s0032g01190
Vitis vinifera
VIT_08s0032g01190
N
0.839
VIT_10s0003g04650
Vitis vinifera
VIT_10s0003g04650
N
0.714
VIT_13s0064g00860
Vitis vinifera
VIT_13s0064g00860
I
0.714
GRMZM2G165488
Zea mays
GRMZM2G165488
N
0.714
GRMZM5G829103
Zea mays
GRMZM5G829103
N
0.750