CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.Ba03783
(
Panicum virgatum
)
CBF/NF-Y
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02045 (CBFB_NFYA)
IPR001289
Pavir.Ba03783
T160732_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ba03783.1.p
CBF/NF-Y
132
187
EPVYVNAKQFKGILRRRLARARAARDLRASRNRKPYLHESRHLHALRRARGSGGRF
Links
Other
CBF/NF-Y
family TFs
Other
Panicum virgatum
TFs
180 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Bb00319
Panicum virgatum
Pavir.Bb00319
N
1.000
MDP0000183865
Malus domestica
MDP0000183865
I
0.955
Si032469m.g
Setaria italica
Si032469m.g
N
0.929
GRMZM2G096016
Zea mays
GRMZM2G096016
N
0.839
LPERR07G03140
Leersia perrieri
LPERR07G03140
N
0.839
Sb02g003320
Sorghum bicolor
Sb02g003320
N
0.804
BGIOSGA024793
Oryza indica
BGIOSGA024793
N
0.786
OGLUM07G02990
Oryza glumaepatula
OGLUM07G02990
N
0.786
OMERI07G18960
Oryza meridionalis
OMERI07G18960
N
0.786
OPUNC07G03530
Oryza punctata
OPUNC07G03530
N
0.786
ORGLA07G0030900
Oryza glaberrima
ORGLA07G0030900
N
0.786
OS07G0158500
Oryza sativa
OS07G0158500
N
0.786
GLYMA09G02770
Glycine max
GLYMA09G02770
N
0.768
GLYMA15G13660
Glycine max
GLYMA15G13660
N
0.768
GSMUA_Achr7G07860_001
Musa acuminata
GSMUA_Achr7G07860_001
N
0.768
ONIVA07G02150
Oryza nivara
ONIVA07G02150
N
0.768
ORUFI07G03340
Oryza rufipogon
ORUFI07G03340
N
0.768
Pavir.Cb00052
Panicum virgatum
Pavir.Cb00052
N
0.768
Pavir.J24924
Panicum virgatum
Pavir.J24924
N
0.768
LPERR12G16030
Leersia perrieri
LPERR12G16030
N
0.750
MLOC_76757
Hordeum vulgare
MLOC_76757
N
0.750
OB12G25960
Oryza brachyantha
OB12G25960
N
0.750
PGSC0003DMG400011806
Solanum tuberosum
PGSC0003DMG400011806
N
0.750
POPTR_0009s06540
Populus trichocarpa
POPTR_0009s06540
N
0.750
POPTR_0016s05440
Populus trichocarpa
POPTR_0016s05440
I
0.750
SELMODRAFT_38090
Selaginella moellendorffii
SELMODRAFT_38090
N
0.750
SELMODRAFT_438143
Selaginella moellendorffii
SELMODRAFT_438143
N
0.750
Si022607m.g
Setaria italica
Si022607m.g
N
0.750
Ca_20250
Cicer arietinum
Ca_20250
N
0.750
29864.m001503
Ricinus communis
29864.m001503
N
0.750
cassava29667.valid.m1
Manihot esculenta
cassava29667.valid.m1
I
0.750
cassava36568.valid.m1
Manihot esculenta
cassava36568.valid.m1
I
0.750
gene28941-v1.0-hybrid
Fragaria vesca
gene28941-v1.0-hybrid
N
0.750
Gorai.011G004400
Gossypium raimondii
Gorai.011G004400
N
0.750
Gorai.013G251200
Gossypium raimondii
Gorai.013G251200
N
0.750
LjSGA_007063.1
Lotus japonicus
LjSGA_007063.1
N
0.750
Bo2g010950
Brassica oleracea
Bo2g010950
N
0.745
Bo9g169310
Brassica oleracea
Bo9g169310
N
0.745
HAP2A
Arabidopsis lyrata
Al_scaffold_0006_1178
N
0.732
AMTR_s00155p00071520
Amborella trichopoda
AMTR_s00155p00071520
N
0.732
NFYA1
Arabidopsis thaliana
AT5G12840
N
0.732
BGIOSGA010142
Oryza indica
BGIOSGA010142
N
0.732
F775_09086
Aegilops tauschii
F775_09086
N
0.732
GLYMA12G36540
Glycine max
GLYMA12G36540
I
0.732
GLYMA13G27230
Glycine max
GLYMA13G27230
I
0.732
GSMUA_Achr4G03600_001
Musa acuminata
GSMUA_Achr4G03600_001
N
0.732
GSMUA_Achr7G01070_001
Musa acuminata
GSMUA_Achr7G01070_001
N
0.732
MTR_2g030170
Medicago truncatula
MTR_2g030170
N
0.732
MTR_3g061510
Medicago truncatula
MTR_3g061510
N
0.732
OB03G35340
Oryza brachyantha
OB03G35340
N
0.732
OGLUM03G28230
Oryza glumaepatula
OGLUM03G28230
N
0.732
OMERI03G24480
Oryza meridionalis
OMERI03G24480
N
0.732
ONIVA03G28530
Oryza nivara
ONIVA03G28530
N
0.732
OPUNC03G25190
Oryza punctata
OPUNC03G25190
N
0.732
ORUFI03G28690
Oryza rufipogon
ORUFI03G28690
N
0.732
OS03G0647600
Oryza sativa
OS03G0647600
N
0.732
PGSC0003DMG400006863
Solanum tuberosum
PGSC0003DMG400006863
I
0.732
POPTR_0001s27300
Populus trichocarpa
POPTR_0001s27300
N
0.732
Si036465m.g
Setaria italica
Si036465m.g
N
0.732
TCM_005875
Theobroma cacao
TCM_005875
I
0.732
TCM_026909
Theobroma cacao
TCM_026909
N
0.732
TCM_040712
Theobroma cacao
TCM_040712
I
0.732
Traes_5AS_378F353CF
Triticum aestivum
Traes_5AS_378F353CF
N
0.732
Traes_5BS_F1DE20B4B
Triticum aestivum
Traes_5BS_F1DE20B4B
N
0.732
Traes_5DS_443F1993A
Triticum aestivum
Traes_5DS_443F1993A
N
0.732
TRIUR3_28596
Triticum urartu
TRIUR3_28596
N
0.732
Ca_07995
Cicer arietinum
Ca_07995
N
0.732
Cla009990
Citrullus lanatus
Cla009990
N
0.732
Cla015490
Citrullus lanatus
Cla015490
I
0.732
30169.m006445
Ricinus communis
30169.m006445
I
0.732
cassava24161.valid.m1
Manihot esculenta
cassava24161.valid.m1
N
0.732
cassava31873.valid.m1
Manihot esculenta
cassava31873.valid.m1
N
0.732
cassava31874.valid.m1
Manihot esculenta
cassava31874.valid.m1
N
0.732
Cucsa.048230
Cucumis sativus
Cucsa.048230
N
0.732
Cucsa.127910
Cucumis sativus
Cucsa.127910
I
0.732
Aquca_026_00359
Aquilegia coerulea
Aquca_026_00359
N
0.732
Bostr.2902s0020
Boechera stricta
Bostr.2902s0020
N
0.732
Cagra.1535s0021
Capsella grandiflora
Cagra.1535s0021
N
0.732
Carubv10001701m.g
Capsella rubella
Carubv10001701m.g
N
0.732
Ciclev10015808m.g
Citrus clementina
Ciclev10015808m.g
I
0.732
Eucgr.A02381
Eucalyptus grandis
Eucgr.A02381
N
0.732
Eucgr.G03377
Eucalyptus grandis
Eucgr.G03377
N
0.732
Eucgr.J00764
Eucalyptus grandis
Eucgr.J00764
N
0.732
Eucgr.K01943
Eucalyptus grandis
Eucgr.K01943
N
0.732
evm.TU.supercontig_20.45
Carica papaya
evm.TU.supercontig_20.45
N
0.732
evm.TU.supercontig_84.49
Carica papaya
evm.TU.supercontig_84.49
I
0.732
Gorai.004G066000
Gossypium raimondii
Gorai.004G066000
I
0.732
Gorai.004G172100
Gossypium raimondii
Gorai.004G172100
I
0.732
Gorai.009G115000
Gossypium raimondii
Gorai.009G115000
N
0.732
MDP0000278621
Malus domestica
MDP0000278621
N
0.732
MDP0000279028
Malus domestica
MDP0000279028
N
0.732
MDP0000682805
Malus domestica
MDP0000682805
N
0.732
orange1.1g019036m.g
Citrus sinensis
orange1.1g019036m.g
I
0.732
Pavir.Ia01146
Panicum virgatum
Pavir.Ia01146
N
0.732
Pavir.Ib04124
Panicum virgatum
Pavir.Ib04124
N
0.732
SapurV1A.0027s0420
Salix purpurea
SapurV1A.0027s0420
N
0.732
SapurV1A.0111s0280
Salix purpurea
SapurV1A.0111s0280
N
0.732
SapurV1A.2739s0010
Salix purpurea
SapurV1A.2739s0010
N
0.732
Bo3g008860
Brassica oleracea
Bo3g008860
N
0.727
Bra006165
Brassica rapa
Bra006165
N
0.727
Bra008878
Brassica rapa
Bra008878
I
0.727
Thhalv10014364m.g
Eutrema salsugineum
Thhalv10014364m.g
N
0.727
BGIOSGA028138
Oryza indica
BGIOSGA028138
N
0.714
BGIOSGA035818
Oryza indica
BGIOSGA035818
N
0.714
BRADI1G11800
Brachypodium distachyon
BRADI1G11800
I
0.714
BRADI4G01380
Brachypodium distachyon
BRADI4G01380
N
0.714
GLYMA02G47380
Glycine max
GLYMA02G47380
N
0.714
GLYMA08G13090
Glycine max
GLYMA08G13090
N
0.714
GLYMA08G45030
Glycine max
GLYMA08G45030
I
0.714
GLYMA14G01360
Glycine max
GLYMA14G01360
N
0.714
GLYMA18G07890
Glycine max
GLYMA18G07890
I
0.714
GRMZM2G165488
Zea mays
GRMZM2G165488
N
0.714
GSMUA_Achr4G11090_001
Musa acuminata
GSMUA_Achr4G11090_001
I
0.714
GSMUA_Achr4G31650_001
Musa acuminata
GSMUA_Achr4G31650_001
N
0.714
GSMUA_Achr9G10300_001
Musa acuminata
GSMUA_Achr9G10300_001
N
0.714
LPERR03G22840
Leersia perrieri
LPERR03G22840
N
0.714
LPERR08G05240
Leersia perrieri
LPERR08G05240
N
0.714
MTR_8g037270
Medicago truncatula
MTR_8g037270
N
0.714
OBART08G05580
Oryza barthii
OBART08G05580
N
0.714
OBART12G19060
Oryza barthii
OBART12G19060
N
0.714
OGLUM08G05950
Oryza glumaepatula
OGLUM08G05950
N
0.714
OGLUM12G20730
Oryza glumaepatula
OGLUM12G20730
N
0.714
OLONG_002491
Oryza longistaminata
OLONG_002491
N
0.714
OLONG_018144
Oryza longistaminata
OLONG_018144
N
0.714
OMERI08G05500
Oryza meridionalis
OMERI08G05500
N
0.714
OMERI12G13600
Oryza meridionalis
OMERI12G13600
N
0.714
ONIVA08G05590
Oryza nivara
ONIVA08G05590
N
0.714
ONIVA12G18060
Oryza nivara
ONIVA12G18060
N
0.714
ORGLA08G0048400
Oryza glaberrima
ORGLA08G0048400
N
0.714
ORGLA12G0163500
Oryza glaberrima
ORGLA12G0163500
N
0.714
ORUFI08G06250
Oryza rufipogon
ORUFI08G06250
N
0.714
ORUFI12G21270
Oryza rufipogon
ORUFI12G21270
N
0.714
OS08G0196700
Oryza sativa
OS08G0196700
N
0.714
OS12G0618600
Oryza sativa
OS12G0618600
N
0.714
POPTR_0006s05210
Populus trichocarpa
POPTR_0006s05210
I
0.714
PRUPE_ppa006634mg
Prunus persica
PRUPE_ppa006634mg
I
0.714
PRUPE_ppa011627mg
Prunus persica
PRUPE_ppa011627mg
N
0.714
PRUPE_ppa012173mg
Prunus persica
PRUPE_ppa012173mg
N
0.714
Solyc01g087240.2
Solanum lycopersicum
Solyc01g087240.2
I
0.714
TCM_024732
Theobroma cacao
TCM_024732
I
0.714
Traes_4AL_7C4C68FD0
Triticum aestivum
Traes_4AL_7C4C68FD0
I
0.714
Traes_4BS_B7B7EFF37
Triticum aestivum
Traes_4BS_B7B7EFF37
I
0.714
Traes_4DS_AFBE29C20
Triticum aestivum
Traes_4DS_AFBE29C20
I
0.714
TRIUR3_09920
Triticum urartu
TRIUR3_09920
I
0.714
VIT_10s0003g04650
Vitis vinifera
VIT_10s0003g04650
N
0.714
VIT_13s0064g00860
Vitis vinifera
VIT_13s0064g00860
I
0.714
Ca_15574
Cicer arietinum
Ca_15574
I
0.714
Cla000845
Citrullus lanatus
Cla000845
N
0.714
Cla008690
Citrullus lanatus
Cla008690
N
0.714
Pm010516
Prunus mume
Pm010516
N
0.714
Pm012301
Prunus mume
Pm012301
I
0.714
Pm016266
Prunus mume
Pm016266
N
0.714
cassava2144.valid.m1
Manihot esculenta
cassava2144.valid.m1
I
0.714
cassava30668.valid.m1
Manihot esculenta
cassava30668.valid.m1
I
0.714
cassava38260.valid.m1
Manihot esculenta
cassava38260.valid.m1
I
0.714
Cucsa.124180
Cucumis sativus
Cucsa.124180
N
0.714
estExt_fgenesh1_pg.C_120063
Sporobolomyces roseus
estExt_fgenesh1_pg.C_120063
I
0.714
estExt_fgenesh1_pg.C_420118
Physcomitrella patens
estExt_fgenesh1_pg.C_420118
N
0.714
EuGene.0000150165
Micromonas pusilla
EuGene.0000150165
N
0.714
Ciclev10005144m.g
Citrus clementina
Ciclev10005144m.g
I
0.714
Ciclev10016491m.g
Citrus clementina
Ciclev10016491m.g
N
0.714
estExt_fgenesh2_pg.C_Chr_130205
Micromonas sp RCC299
estExt_fgenesh2_pg.C_Chr_130205
N
0.714
evm.TU.supercontig_125.6
Carica papaya
evm.TU.supercontig_125.6
I
0.714
gene14681-v1.0-hybrid
Fragaria vesca
gene14681-v1.0-hybrid
I
0.714
gene26819-v1.0-hybrid
Fragaria vesca
gene26819-v1.0-hybrid
N
0.714
Gorai.002G151800
Gossypium raimondii
Gorai.002G151800
I
0.714
Gorai.003G093300
Gossypium raimondii
Gorai.003G093300
I
0.714
Lus10009944.g
Linum usitatissimum
Lus10009944.g
I
0.714
Lus10016411.g
Linum usitatissimum
Lus10016411.g
I
0.714
Lus10019708.g
Linum usitatissimum
Lus10019708.g
I
0.714
Lus10030137.g
Linum usitatissimum
Lus10030137.g
I
0.714
orange1.1g017825m.g
Citrus sinensis
orange1.1g017825m.g
I
0.714
orange1.1g026474m.g
Citrus sinensis
orange1.1g026474m.g
N
0.714
SapurV1A.0083s0230
Salix purpurea
SapurV1A.0083s0230
N
0.714
SapurV1A.0133s0410
Salix purpurea
SapurV1A.0133s0410
I
0.714
PK00926.1
Cannabis sativa
PK00926.1
N
0.714
PK11147.1
Cannabis sativa
PK11147.1
I
0.714
PK21261.1
Cannabis sativa
PK21261.1
I
0.714
PDK_20s1462571g003
Phoenix dactylifera
PDK_20s1462571g003
N
0.714
Bra023378
Brassica rapa
Bra023378
N
0.709