CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjSGA_013150.1
(
Lotus japonicus
)
CBF/NF-Y
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02045 (CBFB_NFYA)
IPR001289
LjSGA_013150.1
T160815_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_013150.1
CBF/NF-Y
166
198
EPVYVNAKQYQGILRRRQARAKAELERKLIKSR
Links
Other
CBF/NF-Y
family TFs
Other
Lotus japonicus
TFs
129 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_09086
Aegilops tauschii
F775_09086
N
0.727
AMTR_s00024p00195160
Amborella trichopoda
AMTR_s00024p00195160
I
0.727
AMTR_s00048p00192930
Amborella trichopoda
AMTR_s00048p00192930
I
0.758
AMTR_s00103p00144230
Amborella trichopoda
AMTR_s00103p00144230
I
0.879
Aquca_009_00676
Aquilegia coerulea
Aquca_009_00676
N
0.788
Aquca_026_00359
Aquilegia coerulea
Aquca_026_00359
N
0.788
Al_scaffold_0003_1456
Arabidopsis lyrata
Al_scaffold_0003_1456
N
0.727
HAP2A
Arabidopsis lyrata
Al_scaffold_0006_1178
N
0.848
fgenesh1_pg.C_scaffold_286000001
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_286000001
N
0.727
NF-YA9
Arabidopsis lyrata
scaffold_302497.1
N
0.909
NFYA9
Arabidopsis thaliana
AT3G20910
N
0.909
NFYA1
Arabidopsis thaliana
AT5G12840
N
0.848
Bostr.15697s0348
Boechera stricta
Bostr.15697s0348
N
0.758
Bostr.19424s0556
Boechera stricta
Bostr.19424s0556
N
0.909
Bostr.2902s0020
Boechera stricta
Bostr.2902s0020
N
0.848
BRADI1G11800
Brachypodium distachyon
BRADI1G11800
I
0.879
BRADI4G01820
Brachypodium distachyon
BRADI4G01820
N
0.718
Bo1g134650
Brassica oleracea
Bo1g134650
N
0.727
Bo5g063060
Brassica oleracea
Bo5g063060
N
0.727
Bo5g105110
Brassica oleracea
Bo5g105110
I
0.939
Bo9g169310
Brassica oleracea
Bo9g169310
N
0.818
Bra003867
Brassica rapa
Bra003867
N
0.727
Bra021527
Brassica rapa
Bra021527
N
0.727
Bra023378
Brassica rapa
Bra023378
N
0.818
Bra023913
Brassica rapa
Bra023913
N
0.909
Bra031242
Brassica rapa
Bra031242
I
0.939
Bra032395
Brassica rapa
Bra032395
N
0.727
PK21261.1
Cannabis sativa
PK21261.1
I
0.879
Cagra.10399s0005
Capsella grandiflora
Cagra.10399s0005
N
0.909
Cagra.1508s0155
Capsella grandiflora
Cagra.1508s0155
N
0.758
Cagra.1535s0021
Capsella grandiflora
Cagra.1535s0021
N
0.848
Carubv10001701m.g
Capsella rubella
Carubv10001701m.g
N
0.848
Carubv10010359m.g
Capsella rubella
Carubv10010359m.g
N
0.758
Carubv10014289m.g
Capsella rubella
Carubv10014289m.g
N
0.909
fgeneshCV_pg.C_scaffold_3000204
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_3000204
I
0.818
Ca_00866
Cicer arietinum
Ca_00866
N
0.727
Ca_07995
Cicer arietinum
Ca_07995
N
0.727
Ca_11593
Cicer arietinum
Ca_11593
N
0.758
Ca_20250
Cicer arietinum
Ca_20250
N
0.848
Cla008690
Citrullus lanatus
Cla008690
N
0.879
Cla009990
Citrullus lanatus
Cla009990
N
0.788
Cla015490
Citrullus lanatus
Cla015490
I
0.879
Ciclev10005144m.g
Citrus clementina
Ciclev10005144m.g
I
0.909
orange1.1g017825m.g
Citrus sinensis
orange1.1g017825m.g
I
0.909
orange1.1g019764m.g
Citrus sinensis
orange1.1g019764m.g
N
0.848
Genemark1.1758_g
Coccomyxa subellipsoidea C169
Genemark1.1758_g
I
0.818
Cucsa.048230
Cucumis sativus
Cucsa.048230
N
0.788
Cucsa.124180
Cucumis sativus
Cucsa.124180
N
0.879
Cucsa.127910
Cucumis sativus
Cucsa.127910
I
0.879
Eucgr.A02381
Eucalyptus grandis
Eucgr.A02381
N
0.848
Eucgr.F03169
Eucalyptus grandis
Eucgr.F03169
I
0.788
Eucgr.J00764
Eucalyptus grandis
Eucgr.J00764
N
0.909
Thhalv10009032m.g
Eutrema salsugineum
Thhalv10009032m.g
N
0.727
GLYMA03G36140
Glycine max
GLYMA03G36140
N
0.727
GLYMA05G29970
Glycine max
GLYMA05G29970
N
0.758
GLYMA07G04050
Glycine max
GLYMA07G04050
I
0.727
GLYMA09G02770
Glycine max
GLYMA09G02770
N
0.727
GLYMA09G07960
Glycine max
GLYMA09G07960
I
0.727
GLYMA15G13660
Glycine max
GLYMA15G13660
N
0.727
GLYMA15G18970
Glycine max
GLYMA15G18970
I
0.758
GLYMA17G05920
Glycine max
GLYMA17G05920
I
0.758
Gorai.002G234400
Gossypium raimondii
Gorai.002G234400
N
0.758
Gorai.004G066000
Gossypium raimondii
Gorai.004G066000
I
0.848
Gorai.009G143800
Gossypium raimondii
Gorai.009G143800
N
0.727
Gorai.010G086300
Gossypium raimondii
Gorai.010G086300
N
0.727
Gorai.011G057600
Gossypium raimondii
Gorai.011G057600
N
0.758
Gorai.013G226200
Gossypium raimondii
Gorai.013G226200
I
0.727
Gorai.013G251200
Gossypium raimondii
Gorai.013G251200
N
0.909
MLOC_52315
Hordeum vulgare
MLOC_52315
N
0.778
MLOC_5869
Hordeum vulgare
MLOC_5869
N
0.763
MLOC_76757
Hordeum vulgare
MLOC_76757
N
0.758
LPERR03G25340
Leersia perrieri
LPERR03G25340
I
0.848
LPERR08G05240
Leersia perrieri
LPERR08G05240
N
0.727
LPERR12G16030
Leersia perrieri
LPERR12G16030
N
0.727
Lus10011326.g
Linum usitatissimum
Lus10011326.g
I
0.818
Lus10012202.g
Linum usitatissimum
Lus10012202.g
I
0.818
Lus10016411.g
Linum usitatissimum
Lus10016411.g
I
0.818
Lus10019708.g
Linum usitatissimum
Lus10019708.g
I
0.818
Lus10023358.g
Linum usitatissimum
Lus10023358.g
N
0.818
Lus10038448.g
Linum usitatissimum
Lus10038448.g
N
0.818
MDP0000296077
Malus domestica
MDP0000296077
N
0.970
MDP0000314593
Malus domestica
MDP0000314593
N
0.879
cassava36568.valid.m1
Manihot esculenta
cassava36568.valid.m1
I
0.848
MTR_2g030170
Medicago truncatula
MTR_2g030170
N
0.727
EuGene.0000150165
Micromonas pusilla
EuGene.0000150165
N
0.848
estExt_fgenesh2_pg.C_Chr_130205
Micromonas sp RCC299
estExt_fgenesh2_pg.C_Chr_130205
N
0.848
mg014677m
Mimulus guttatus
mg014677m
N
0.818
mgf012950m
Mimulus guttatus
mgf012950m
I
0.909
GSMUA_Achr4G03600_001
Musa acuminata
GSMUA_Achr4G03600_001
N
0.818
GSMUA_Achr7G01070_001
Musa acuminata
GSMUA_Achr7G01070_001
N
0.818
GSMUA_Achr9G10300_001
Musa acuminata
GSMUA_Achr9G10300_001
N
0.788
GSMUA_AchrUn_randomG15140_001
Musa acuminata
GSMUA_AchrUn_randomG15140_001
I
0.727
OPUNC08G05330
Oryza punctata
OPUNC08G05330
N
0.727
Pavir.Ia00780
Panicum virgatum
Pavir.Ia00780
I
0.818
Pavir.J08102
Panicum virgatum
Pavir.J08102
I
0.818
PDK_20s1414021g001
Phoenix dactylifera
PDK_20s1414021g001
N
0.879
PDK_20s1414531g001
Phoenix dactylifera
PDK_20s1414531g001
N
0.794
PDK_20s1474561g001
Phoenix dactylifera
PDK_20s1474561g001
N
0.818
estExt_fgenesh1_pg.C_420118
Physcomitrella patens
estExt_fgenesh1_pg.C_420118
N
0.879
POPTR_0001s38100
Populus trichocarpa
POPTR_0001s38100
N
0.818
POPTR_0006s05210
Populus trichocarpa
POPTR_0006s05210
I
0.909
Pm010516
Prunus mume
Pm010516
N
0.788
PRUPE_ppa011627mg
Prunus persica
PRUPE_ppa011627mg
N
0.788
30075.m001182
Ricinus communis
30075.m001182
N
0.818
SapurV1A.0027s0420
Salix purpurea
SapurV1A.0027s0420
N
0.788
SapurV1A.0083s0230
Salix purpurea
SapurV1A.0083s0230
N
0.818
SapurV1A.0534s0150
Salix purpurea
SapurV1A.0534s0150
N
0.727
SapurV1A.2739s0010
Salix purpurea
SapurV1A.2739s0010
N
0.788
Si037045m.g
Setaria italica
Si037045m.g
I
0.818
Solyc01g008490.2
Solanum lycopersicum
Solyc01g008490.2
N
0.848
Solyc01g087240.2
Solanum lycopersicum
Solyc01g087240.2
I
0.879
PGSC0003DMG400008148
Solanum tuberosum
PGSC0003DMG400008148
N
0.735
Sb01g011220
Sorghum bicolor
Sb01g011220
I
0.818
TCM_040712
Theobroma cacao
TCM_040712
I
0.879
Traes_4AL_7C4C68FD0
Triticum aestivum
Traes_4AL_7C4C68FD0
I
0.879
Traes_4BS_B7B7EFF37
Triticum aestivum
Traes_4BS_B7B7EFF37
I
0.879
Traes_4DS_AFBE29C20
Triticum aestivum
Traes_4DS_AFBE29C20
I
0.879
Traes_5AS_378F353CF
Triticum aestivum
Traes_5AS_378F353CF
N
0.727
Traes_5BS_F1DE20B4B
Triticum aestivum
Traes_5BS_F1DE20B4B
N
0.727
Traes_5DS_443F1993A
Triticum aestivum
Traes_5DS_443F1993A
N
0.727
Traes_6DL_FD903DBD8
Triticum aestivum
Traes_6DL_FD903DBD8
I
0.857
TRIUR3_09920
Triticum urartu
TRIUR3_09920
I
0.879
TRIUR3_28596
Triticum urartu
TRIUR3_28596
N
0.727
VIT_08s0007g08250
Vitis vinifera
VIT_08s0007g08250
I
0.879
VIT_08s0032g01190
Vitis vinifera
VIT_08s0032g01190
N
0.727
VIT_13s0064g00860
Vitis vinifera
VIT_13s0064g00860
I
0.848
GRMZM2G026157
Zea mays
GRMZM2G026157
N
0.818
GRMZM2G091964
Zea mays
GRMZM2G091964
I
0.818
GRMZM2G165488
Zea mays
GRMZM2G165488
N
0.727