CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo8g043280
(
Brassica oleracea
)
CG-1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03859 (CG-1)
IPR005559
Bo8g043280
T163028_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CAMTA5
M06827_2.00
Arabidopsis thaliana
NVGYGTNNDHNVCGYGTN
NACRCGBNDHNNACRCBN
Dap-seq
OMalley et al.(2016)
CAMTA5_col_a
0.939
0.939
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo8g043280.1
CG-1
31
145
EAYTRWLRPNEIHALLSNHKYFTINVKPVHLPKSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGDDNPTFVRRCYWLLDKSQEHIVLVHYRET
Links
Other
CG-1
family TFs
Other
Brassica oleracea
TFs
66 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CAMTA5
Arabidopsis thaliana
AT4G16150
D
0.939
Cagra.4396s0001
Capsella grandiflora
Cagra.4396s0001
I
0.842
Gorai.005G065700
Gossypium raimondii
Gorai.005G065700
I
0.851
Gorai.004G075100
Gossypium raimondii
Gorai.004G075100
I
0.869
gene10891-v1.0-hybrid
Fragaria vesca
gene10891-v1.0-hybrid
I
0.833
evm.TU.supercontig_929.1
Carica papaya
evm.TU.supercontig_929.1
I
0.895
Eucgr.H04035
Eucalyptus grandis
Eucgr.H04035
I
0.904
Ciclev10004273m.g
Citrus clementina
Ciclev10004273m.g
I
0.877
Carubv10012963m.g
Capsella rubella
Carubv10012963m.g
I
0.851
Carubv10004090m.g
Capsella rubella
Carubv10004090m.g
I
0.956
Gorai.006G079000
Gossypium raimondii
Gorai.006G079000
I
0.912
Cagra.0053s0009
Capsella grandiflora
Cagra.0053s0009
I
0.956
Bostr.30275s0060
Boechera stricta
Bostr.30275s0060
I
0.947
Bostr.19424s0974
Boechera stricta
Bostr.19424s0974
I
0.851
Aquca_003_00568
Aquilegia coerulea
Aquca_003_00568
I
0.868
mgf013655m
Mimulus guttatus
mgf013655m
I
0.754
mgf012030m
Mimulus guttatus
mgf012030m
I
0.886
Cucsa.325250
Cucumis sativus
Cucsa.325250
I
0.886
cassava40488.m1
Manihot esculenta
cassava40488.m1
I
0.886
Gorai.011G198600
Gossypium raimondii
Gorai.011G198600
I
0.944
Lus10016873.g
Linum usitatissimum
Lus10016873.g
I
0.713
Lus10036455.g
Linum usitatissimum
Lus10036455.g
I
0.763
Lus10037738.g
Linum usitatissimum
Lus10037738.g
I
0.895
Lus10041126.g
Linum usitatissimum
Lus10041126.g
I
0.772
MDP0000164873
Malus domestica
MDP0000164873
I
0.904
MDP0000167705
Malus domestica
MDP0000167705
I
0.904
MDP0000233860
Malus domestica
MDP0000233860
I
0.904
orange1.1g002476m.g
Citrus sinensis
orange1.1g002476m.g
I
0.877
SapurV1A.0050s0650
Salix purpurea
SapurV1A.0050s0650
I
0.886
SapurV1A.0060s0130
Salix purpurea
SapurV1A.0060s0130
I
0.877
Thhalv10020047m.g
Eutrema salsugineum
Thhalv10020047m.g
I
0.851
Thhalv10024342m.g
Eutrema salsugineum
Thhalv10024342m.g
I
0.965
PK20811.1
Cannabis sativa
PK20811.1
I
0.868
chr4.CM0429.140.nd
Lotus japonicus
chr4.CM0429.140.nd
I
0.904
OLONG_014480
Oryza longistaminata
OLONG_014480
I
0.702
AT3G16940
Arabidopsis thaliana
AT3G16940
I
0.851
Bo5g123580
Brassica oleracea
Bo5g123580
I
0.851
Bra022188
Brassica rapa
Bra022188
I
0.851
Bra038040
Brassica rapa
Bra038040
I
0.991
BRADI1G27170
Brachypodium distachyon
BRADI1G27170
I
0.711
fgenesh1_pg.C_scaffold_7002321
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_7002321
I
0.939
fgenesh1_pm.C_scaffold_3001474
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_3001474
I
0.833
GLYMA07G37090
Glycine max
GLYMA07G37090
I
0.921
GLYMA09G04310
Glycine max
GLYMA09G04310
I
0.886
GLYMA15G15350
Glycine max
GLYMA15G15350
I
0.895
GLYMA17G03510
Glycine max
GLYMA17G03510
I
0.912
MTR_2g034650
Medicago truncatula
MTR_2g034650
I
0.895
MTR_4g121840
Medicago truncatula
MTR_4g121840
I
0.921
OB07G20740
Oryza brachyantha
OB07G20740
I
0.711
OGLUM07G13800
Oryza glumaepatula
OGLUM07G13800
I
0.702
AMTR_s00057p00042800
Amborella trichopoda
AMTR_s00057p00042800
I
0.754
ONIVA07G13300
Oryza nivara
ONIVA07G13300
I
0.702
OPUNC07G13630
Oryza punctata
OPUNC07G13630
I
0.702
ORUFI07G15090
Oryza rufipogon
ORUFI07G15090
I
0.702
OS07G0490200
Oryza sativa
OS07G0490200
I
0.702
POPTR_0008s10730
Populus trichocarpa
POPTR_0008s10730
I
0.895
POPTR_0010s15160
Populus trichocarpa
POPTR_0010s15160
I
0.895
PRUPE_ppa001493mg
Prunus persica
PRUPE_ppa001493mg
I
0.904
Solyc01g060170.2
Solanum lycopersicum
Solyc01g060170.2
I
0.877
Solyc12g099340.1
Solanum lycopersicum
Solyc12g099340.1
I
0.860
TCM_021327
Theobroma cacao
TCM_021327
I
0.886
Traes_2AS_4C4190DEB
Triticum aestivum
Traes_2AS_4C4190DEB
I
0.711
VIT_05s0077g01240
Vitis vinifera
VIT_05s0077g01240
I
0.842
Ca_02997
Cicer arietinum
Ca_02997
I
0.895
Cla009415
Citrullus lanatus
Cla009415
I
0.895
29889.m003269
Ricinus communis
29889.m003269
I
0.865